Wall clock time and date at job start Tue Mar 31 2020 14:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81403 * 102.99881 * 2 1 4 4 H 1.08995 * 109.47109 * 304.99880 * 3 2 1 5 5 C 1.52995 * 109.47077 * 65.00447 * 3 2 1 6 6 C 1.53001 * 109.46806 * 184.99899 * 3 2 1 7 7 C 1.50699 * 109.47180 * 65.00136 * 6 3 2 8 8 N 1.30297 * 126.34851 * 90.01993 * 7 6 3 9 9 N 1.28525 * 110.05439 * 180.02562 * 8 7 6 10 10 C 1.31218 * 109.86262 * 0.02562 * 9 8 7 11 11 N 1.38584 * 126.47401 * 179.97438 * 10 9 8 12 12 C 1.46847 * 110.99927 * 59.26909 * 11 10 9 13 13 C 1.53034 * 109.52153 * 174.16069 * 12 11 10 14 14 C 1.53121 * 109.28111 * 59.17536 * 13 12 11 15 15 C 1.50698 * 109.52496 * 182.43887 * 14 13 12 16 16 H 1.07998 * 119.99737 * 119.67887 * 15 14 13 17 17 C 1.37876 * 120.00343 * 299.68478 * 15 14 13 18 18 N 1.31521 * 119.99985 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47342 * 90.00013 * 19 17 15 21 21 H 1.48511 * 109.47403 * 209.99966 * 19 17 15 22 22 H 1.48503 * 109.47368 * 329.99873 * 19 17 15 23 23 C 1.53120 * 109.16037 * 302.34554 * 14 13 12 24 24 C 1.46842 * 111.00122 * 295.05405 * 11 10 9 25 25 N 1.36456 * 107.04951 * 359.73715 * 10 9 8 26 26 C 1.46498 * 127.13461 * 180.26240 * 25 10 9 27 27 H 1.09002 * 109.47001 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47180 * 299.99766 * 1 2 3 29 29 H 1.08997 * 109.47260 * 60.00203 * 1 2 3 30 30 H 1.08995 * 109.47614 * 59.99743 * 5 3 2 31 31 H 1.09000 * 109.46590 * 299.99472 * 5 3 2 32 32 H 1.09005 * 109.46958 * 180.02562 * 5 3 2 33 33 H 1.09007 * 109.46977 * 184.99621 * 6 3 2 34 34 H 1.09000 * 109.47809 * 305.00030 * 6 3 2 35 35 H 1.08999 * 109.45648 * 294.17267 * 12 11 10 36 36 H 1.08996 * 109.46642 * 54.14332 * 12 11 10 37 37 H 1.09003 * 109.50189 * 299.23676 * 13 12 11 38 38 H 1.09001 * 109.50275 * 179.11778 * 13 12 11 39 39 H 1.08996 * 109.52120 * 62.25181 * 14 13 12 40 40 H 0.96994 * 120.00197 * 179.97438 * 18 17 15 41 41 H 1.08995 * 109.50076 * 297.71075 * 23 14 13 42 42 H 1.08995 * 109.50155 * 177.59086 * 23 14 13 43 43 H 1.09004 * 109.46303 * 305.85765 * 24 11 10 44 44 H 1.09005 * 109.46452 * 65.82334 * 24 11 10 45 45 H 1.08998 * 109.47260 * 275.50941 * 26 25 10 46 46 H 1.08994 * 109.47338 * 35.51287 * 26 25 10 47 47 H 1.09000 * 109.47220 * 155.51488 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 1 1.7294 2.2541 -0.8418 5 6 1.7428 2.4015 1.3074 6 6 3.7369 1.9412 -0.1257 7 6 4.1919 1.4270 -1.4672 8 7 4.2817 2.1171 -2.5688 9 7 4.7029 1.3684 -3.5248 10 6 4.9055 0.1503 -3.0809 11 7 5.3584 -0.9311 -3.8199 12 6 6.6772 -0.6545 -4.4034 13 6 7.2086 -1.9161 -5.0874 14 6 6.2274 -2.3504 -6.1797 15 6 6.7152 -3.6261 -6.8168 16 1 6.1047 -4.5161 -6.7793 17 6 7.9409 -3.6569 -7.4474 18 7 8.6842 -2.5729 -7.4934 19 14 8.5459 -5.2383 -8.2363 20 1 8.0955 -5.2898 -9.6504 21 1 10.0296 -5.2798 -8.1876 22 1 7.9936 -6.4026 -7.4983 23 6 4.8500 -2.5854 -5.5535 24 6 4.3870 -1.3044 -4.8559 25 7 4.5912 0.1508 -1.7531 26 6 4.6636 -0.9817 -0.8266 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.2354 1.9150 2.1491 31 1 0.6636 2.2778 1.3969 32 1 1.9876 3.4638 1.3071 33 1 3.9902 2.9977 -0.0367 34 1 4.2339 1.3804 0.6659 35 1 6.5888 0.1466 -5.1371 36 1 7.3665 -0.3508 -3.6155 37 1 7.3102 -2.7138 -4.3515 38 1 8.1806 -1.7061 -5.5339 39 1 6.1551 -1.5690 -6.9361 40 1 9.5467 -2.5947 -7.9367 41 1 4.9146 -3.3935 -4.8250 42 1 4.1368 -2.8534 -6.3329 43 1 3.4128 -1.4726 -4.3967 44 1 4.3093 -0.5001 -5.5876 45 1 3.7483 -1.5690 -0.8984 46 1 5.5181 -1.6075 -1.0839 47 1 4.7784 -0.6110 0.1920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646678837.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:33 Heat of formation + Delta-G solvation = 57.930669 kcal Electronic energy + Delta-G solvation = -26006.631316 eV Core-core repulsion = 22544.075839 eV Total energy + Delta-G solvation = -3462.555477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 324.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.01693 -39.92580 -36.67851 -36.03834 -35.39063 -33.34467 -31.68150 -31.18855 -29.68977 -28.60776 -27.84419 -27.22914 -24.38426 -23.90586 -23.37651 -22.16870 -21.70971 -20.30111 -18.54606 -18.22480 -17.67051 -17.36255 -17.07361 -16.49102 -16.21713 -15.76539 -15.55151 -15.09334 -14.77829 -14.62915 -14.46878 -14.40622 -14.37143 -14.09666 -13.86882 -13.68116 -13.26994 -13.15726 -13.04174 -12.86194 -12.74511 -12.58816 -12.41065 -12.38424 -12.28802 -12.12864 -11.98614 -11.65070 -11.39384 -11.10904 -10.91567 -10.74744 -10.67620 -10.39663 -10.04078 -9.80937 -8.66680 -8.06163 -6.19425 0.69002 0.71282 1.28036 1.43923 1.44912 1.54853 1.62122 1.72866 2.46070 2.75188 3.21487 3.23567 3.68511 3.76737 3.90936 3.91986 4.07419 4.13313 4.24199 4.29629 4.33053 4.35377 4.41002 4.42691 4.52375 4.57330 4.67100 4.69789 4.75654 4.76692 4.80780 4.87371 4.90461 4.98355 5.01614 5.06644 5.19934 5.22556 5.29007 5.48592 5.59757 5.69117 5.74736 6.00150 6.14163 6.31444 6.39675 6.91767 7.48671 7.67955 8.99069 Molecular weight = 324.17amu Principal moments of inertia in cm(-1) A = 0.027088 B = 0.002774 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.409880 B =10092.141250 C =10570.117852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 S -0.299 6.299 3 C -0.043 4.043 4 H 0.077 0.923 5 C -0.139 4.139 6 C -0.007 4.007 7 C 0.188 3.812 8 N -0.326 5.326 9 N -0.352 5.352 10 C 0.344 3.656 11 N -0.455 5.455 12 C 0.086 3.914 13 C -0.089 4.089 14 C 0.043 3.957 15 C -0.528 4.528 16 H 0.057 0.943 17 C 0.012 3.988 18 N -0.919 5.919 19 Si 0.954 3.046 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.266 1.266 23 C -0.093 4.093 24 C 0.083 3.917 25 N -0.448 5.448 26 C 0.081 3.919 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.021 0.979 36 H 0.066 0.934 37 H 0.045 0.955 38 H 0.069 0.931 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.026 0.974 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.705 6.795 23.035 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.282 4.282 2 S -0.073 6.073 3 C -0.173 4.173 4 H 0.096 0.904 5 C -0.198 4.198 6 C -0.048 4.048 7 C -0.080 4.080 8 N -0.167 5.167 9 N -0.196 5.196 10 C -0.014 4.014 11 N -0.181 5.181 12 C -0.041 4.041 13 C -0.128 4.128 14 C 0.025 3.975 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.187 4.187 18 N -0.559 5.559 19 Si 0.780 3.220 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.190 1.190 23 C -0.131 4.131 24 C -0.044 4.044 25 N -0.139 5.139 26 C -0.061 4.061 27 H 0.124 0.876 28 H 0.113 0.887 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.101 0.899 33 H 0.148 0.852 34 H 0.133 0.867 35 H 0.040 0.960 36 H 0.084 0.916 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.006 0.994 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.097 0.903 44 H 0.044 0.956 45 H 0.109 0.891 46 H 0.108 0.892 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.880 6.702 22.348 27.148 hybrid contribution -0.203 -0.182 -0.851 0.894 sum -14.083 6.519 21.497 26.513 Atomic orbital electron populations 1.23428 0.92295 1.07053 1.05474 1.87003 1.10018 1.12320 1.97965 1.23169 0.97521 0.93461 1.03118 0.90420 1.22036 1.01908 1.01772 0.94066 1.20126 0.93288 1.04406 0.86941 1.25228 1.01890 0.81316 0.99595 1.73877 1.18983 1.26852 0.96953 1.74551 1.19432 1.01277 1.24351 1.22508 1.02398 0.91814 0.84657 1.58850 1.04127 1.29179 1.25930 1.22052 0.87010 0.98366 0.96657 1.21453 1.01010 0.93743 0.96570 1.18674 0.91460 0.94883 0.92524 1.21521 1.03026 0.97226 1.34823 0.92523 1.25751 0.97118 0.99120 0.96685 1.70017 1.12208 1.29216 1.44437 0.85617 0.77216 0.80404 0.78766 1.20491 1.21090 1.19032 1.21550 0.97732 0.95290 0.98501 1.22049 0.93621 0.97559 0.91139 1.46265 1.47655 1.11526 1.08467 1.22253 1.04754 0.86598 0.92458 0.87635 0.88667 0.91065 0.90129 0.91627 0.89900 0.85190 0.86738 0.96026 0.91579 0.93642 0.91265 0.99380 0.93093 0.91632 0.91768 0.90292 0.95602 0.89084 0.89166 0.86858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.45 113.37 1.18 -0.11 16 2 S -0.30 -4.69 18.52 -56.49 -1.05 -5.74 16 3 C -0.04 -0.57 2.81 30.59 0.09 -0.49 16 4 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 5 C -0.14 -0.99 9.10 71.98 0.66 -0.33 16 6 C -0.01 -0.11 5.05 29.85 0.15 0.04 16 7 C 0.19 4.94 6.75 137.64 0.93 5.86 16 8 N -0.33 -11.45 12.18 -49.54 -0.60 -12.06 16 9 N -0.35 -14.21 12.18 -58.00 -0.71 -14.92 16 10 C 0.34 12.40 6.42 260.11 1.67 14.07 16 11 N -0.45 -17.19 4.67 -706.16 -3.30 -20.48 16 12 C 0.09 3.65 5.36 86.32 0.46 4.11 16 13 C -0.09 -4.28 5.12 30.65 0.16 -4.12 16 14 C 0.04 2.18 2.16 -11.46 -0.02 2.16 16 15 C -0.53 -28.91 8.56 25.60 0.22 -28.70 16 16 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 17 C 0.01 0.64 5.31 84.65 0.45 1.09 16 18 N -0.92 -53.48 11.37 21.45 0.24 -53.24 16 19 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C -0.09 -3.85 5.32 30.65 0.16 -3.69 16 24 C 0.08 3.19 5.39 86.33 0.47 3.66 16 25 N -0.45 -12.39 3.14 -538.19 -1.69 -14.08 16 26 C 0.08 1.60 9.58 127.77 1.22 2.82 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 0.73 7.14 -2.39 -0.02 0.71 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.42 6.92 -2.39 -0.02 0.41 16 32 H 0.08 0.42 8.14 -2.38 -0.02 0.40 16 33 H 0.13 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.11 1.17 7.17 -2.39 -0.02 1.16 16 35 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 2.62 8.10 -2.39 -0.02 2.60 16 37 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.07 3.75 6.18 -2.39 -0.01 3.73 16 39 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 40 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 41 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.08 2.70 8.10 -2.39 -0.02 2.69 16 44 H 0.03 1.08 8.14 -2.38 -0.02 1.06 16 45 H 0.09 1.78 7.05 -2.39 -0.02 1.76 16 46 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.11 1.49 7.10 -2.39 -0.02 1.47 16 Total: -1.00 -69.86 379.98 3.65 -66.20 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 0.94 Total: 12.29 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 7.79 Total: -3.61 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -6.06 Total: -114.77 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: -4.69 SS G_CDS: -1.05 Total: -5.74 kcal Total: -69.86 3.65 -66.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646678837.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.131 kcal (2) G-P(sol) polarization free energy of solvation -69.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds