Wall clock time and date at job start Tue Mar 31 2020 14:10:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46811 * 2 1 4 4 N 1.46498 * 109.47469 * 120.00068 * 2 1 3 5 5 C 1.34775 * 120.00090 * 275.00557 * 4 2 1 6 6 O 1.21282 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47052 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.74869 * 54.30599 * 8 7 5 10 10 C 1.54259 * 110.84743 * 290.83423 * 8 7 5 11 11 O 1.45375 * 106.62847 * 226.61617 * 10 8 7 12 12 C 1.33999 * 111.49720 * 357.72765 * 11 10 8 13 13 O 1.20822 * 125.70044 * 199.68880 * 12 11 10 14 14 C 1.52000 * 108.70814 * 19.51353 * 12 11 10 15 15 C 1.52999 * 109.47357 * 240.00347 * 2 1 3 16 16 C 1.53044 * 109.45897 * 64.99759 * 15 2 1 17 17 C 1.53194 * 109.31228 * 178.61692 * 16 15 2 18 18 N 1.46923 * 108.77818 * 54.63278 * 17 16 15 19 19 C 1.36935 * 120.63013 * 126.37083 * 18 17 16 20 20 H 1.07997 * 120.00003 * 332.24113 * 19 18 17 21 21 C 1.38811 * 119.99848 * 152.25074 * 19 18 17 22 22 N 1.31621 * 119.99881 * 335.23772 * 21 19 18 23 23 Si 1.86805 * 120.00093 * 155.52228 * 21 19 18 24 24 H 1.48497 * 109.47162 * 179.71744 * 23 21 19 25 25 H 1.48501 * 109.46645 * 299.71742 * 23 21 19 26 26 H 1.48500 * 109.47160 * 59.71867 * 23 21 19 27 27 C 1.46924 * 118.73831 * 306.64529 * 18 17 16 28 28 C 1.52763 * 109.00800 * 53.30883 * 27 18 17 29 29 H 1.08995 * 109.47287 * 299.99513 * 1 2 3 30 30 H 1.09000 * 109.46946 * 60.00196 * 1 2 3 31 31 H 1.09006 * 109.46945 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00182 * 94.99753 * 4 2 1 33 33 H 1.08998 * 109.47380 * 300.00201 * 7 5 4 34 34 H 1.09003 * 109.47028 * 60.00209 * 7 5 4 35 35 H 1.08994 * 110.03173 * 345.91083 * 10 8 7 36 36 H 1.09000 * 110.02654 * 107.32992 * 10 8 7 37 37 H 1.09003 * 110.89106 * 213.34523 * 14 12 11 38 38 H 1.08998 * 110.66278 * 90.00092 * 14 12 11 39 39 H 1.08995 * 109.44906 * 184.95942 * 15 2 1 40 40 H 1.08996 * 109.49642 * 58.66403 * 16 15 2 41 41 H 1.09001 * 109.52139 * 298.58264 * 16 15 2 42 42 H 1.09006 * 109.58170 * 294.84730 * 17 16 15 43 43 H 1.09001 * 109.58948 * 174.42581 * 17 16 15 44 44 H 0.96997 * 120.00123 * 354.51925 * 22 21 19 45 45 H 1.09002 * 109.59010 * 173.13891 * 27 18 17 46 46 H 1.08994 * 109.59213 * 293.56747 * 27 18 17 47 47 H 1.09003 * 109.56839 * 185.55247 * 28 27 18 48 48 H 1.09000 * 109.39069 * 65.51311 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1585 2.4115 7 6 2.6489 -0.7289 3.5877 8 6 2.7010 0.2544 4.7587 9 1 1.7336 0.7357 4.9022 10 6 3.8105 1.3047 4.5448 11 8 4.5435 1.3964 5.7969 12 6 4.0130 0.6012 6.7359 13 8 4.1813 0.7080 7.9276 14 6 3.1599 -0.4562 6.0542 15 6 2.0401 -0.7212 -1.2493 16 6 1.6350 0.0695 -2.4955 17 6 2.1769 -0.6370 -3.7421 18 7 1.7131 -2.0311 -3.7347 19 6 1.0529 -2.5524 -4.8152 20 1 0.4799 -1.9046 -5.4620 21 6 1.1200 -3.9136 -5.0790 22 7 2.1435 -4.6183 -4.6454 23 14 -0.2385 -4.7436 -6.0564 24 1 0.0708 -6.1883 -6.2055 25 1 -1.5303 -4.5853 -5.3412 26 1 -0.3360 -4.1171 -7.3992 27 6 1.9658 -2.8534 -2.5437 28 6 1.4311 -2.1237 -1.3127 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 1.1526 33 1 1.9762 -1.5508 3.8325 34 1 3.6481 -1.1213 3.3985 35 1 4.4776 0.9853 3.7442 36 1 3.3681 2.2703 4.2998 37 1 2.3024 -0.7218 6.6726 38 1 3.7555 -1.3384 5.8197 39 1 3.1264 -0.7985 -1.2055 40 1 2.0497 1.0759 -2.4385 41 1 0.5480 0.1266 -2.5533 42 1 3.2667 -0.6144 -3.7301 43 1 1.8087 -0.1341 -4.6363 44 1 2.8888 -4.1745 -4.2113 45 1 1.4582 -3.8125 -2.6473 46 1 3.0378 -3.0153 -2.4320 47 1 1.7006 -2.6783 -0.4138 48 1 0.3459 -2.0464 -1.3808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677328385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:46 Heat of formation + Delta-G solvation = -115.522528 kcal Electronic energy + Delta-G solvation = -27973.780167 eV Core-core repulsion = 24028.657573 eV Total energy + Delta-G solvation = -3945.122594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.43110 -40.14220 -38.43016 -37.77768 -35.67663 -34.62575 -33.21858 -31.24928 -30.24383 -29.44915 -28.68135 -27.55814 -25.39434 -23.55954 -22.67536 -21.98218 -21.71573 -20.63476 -20.27302 -18.84156 -17.94355 -17.44169 -17.16364 -17.11714 -16.51692 -15.95959 -15.64947 -14.85947 -14.59529 -14.46011 -14.12859 -14.04190 -13.83254 -13.71790 -13.58317 -13.46779 -13.17107 -12.88365 -12.69213 -12.52756 -12.18856 -11.93210 -11.90001 -11.68498 -11.66369 -11.26232 -10.97582 -10.87920 -10.72731 -10.60116 -10.43872 -10.35007 -10.13373 -10.08437 -9.87421 -9.76810 -9.31925 -9.16955 -8.42746 -6.93640 -6.12093 -3.28388 1.66727 2.38044 2.86458 2.91584 3.45761 3.48089 3.48199 3.66427 3.74130 4.07579 4.19111 4.53799 4.55075 4.74646 4.79774 4.88062 4.94219 4.99264 5.05498 5.11860 5.13007 5.24762 5.29724 5.42842 5.48114 5.50487 5.56525 5.69365 5.85214 5.91623 5.97562 6.09353 6.16341 6.27536 6.31840 6.41079 6.44051 6.49311 6.54889 6.65996 6.76754 7.00070 7.07366 7.11975 7.32730 7.95668 7.99625 8.52711 9.06824 9.79675 10.24198 11.16527 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.002190 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.716024 B =12783.075058 C =13107.483961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.084 0.916 4 N -0.719 5.719 5 C 0.510 3.490 6 O -0.544 6.544 7 C -0.135 4.135 8 C -0.106 4.106 9 H 0.108 0.892 10 C 0.065 3.935 11 O -0.351 6.351 12 C 0.486 3.514 13 O -0.458 6.458 14 C -0.184 4.184 15 C -0.085 4.085 16 C -0.126 4.126 17 C 0.147 3.853 18 N -0.598 5.598 19 C -0.348 4.348 20 H 0.055 0.945 21 C -0.025 4.025 22 N -0.917 5.917 23 Si 1.063 2.937 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.150 3.850 28 C -0.131 4.131 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.401 0.599 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.015 0.985 43 H 0.055 0.945 44 H 0.268 0.732 45 H 0.079 0.921 46 H 0.014 0.986 47 H 0.045 0.955 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.532 7.111 16.944 18.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.102 0.898 4 N -0.371 5.371 5 C 0.296 3.704 6 O -0.422 6.422 7 C -0.175 4.175 8 C -0.125 4.125 9 H 0.126 0.874 10 C -0.009 4.009 11 O -0.268 6.268 12 C 0.326 3.674 13 O -0.342 6.342 14 C -0.223 4.223 15 C -0.105 4.105 16 C -0.166 4.166 17 C 0.021 3.979 18 N -0.322 5.322 19 C -0.477 4.477 20 H 0.073 0.927 21 C -0.227 4.227 22 N -0.557 5.557 23 Si 0.893 3.107 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.024 3.976 28 C -0.170 4.170 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.097 0.903 46 H 0.032 0.968 47 H 0.063 0.937 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.028 6.674 16.935 18.203 hybrid contribution 0.565 0.909 0.331 1.121 sum 0.593 7.584 17.266 18.867 Atomic orbital electron populations 1.22225 0.95245 1.02546 1.02046 1.21115 0.94322 0.96828 0.83549 0.89839 1.46229 1.66623 1.14356 1.09860 1.20519 0.77823 0.87446 0.84650 1.90706 1.50454 1.15962 1.85081 1.21747 1.04325 0.99189 0.92274 1.22235 1.01142 0.95761 0.93327 0.87360 1.24087 0.92597 1.01710 0.82507 1.86792 1.53425 1.63293 1.23295 1.23215 0.77114 0.81208 0.85854 1.90730 1.58509 1.72328 1.12588 1.23235 1.02206 0.99476 0.97352 1.21314 0.99924 0.96183 0.93039 1.22053 1.01472 0.97472 0.95557 1.20886 0.95445 0.86571 0.94979 1.44087 1.66918 1.07773 1.13454 1.19971 1.26477 0.94730 1.06555 0.92690 1.25835 1.01312 0.94704 1.00812 1.70791 1.05862 1.39332 1.39694 0.83545 0.75289 0.76278 0.75582 1.21102 1.22078 1.21974 1.20842 0.96700 0.95340 0.84699 1.22121 1.01159 0.94772 0.98988 0.92909 0.91257 0.91890 0.76333 0.87574 0.88008 0.88665 0.87650 0.86774 0.86403 0.91439 0.92909 0.91693 0.96749 0.92602 0.92090 0.90296 0.96823 0.93655 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 8.75 37.16 0.33 -1.64 16 2 C 0.15 1.73 2.35 -67.93 -0.16 1.57 16 3 H 0.08 1.08 7.58 -51.93 -0.39 0.69 16 4 N -0.72 -6.81 5.01 -53.81 -0.27 -7.08 16 5 C 0.51 4.64 7.61 -10.99 -0.08 4.56 16 6 O -0.54 -6.76 14.87 5.56 0.08 -6.67 16 7 C -0.14 -0.68 4.98 -27.88 -0.14 -0.82 16 8 C -0.11 -0.61 2.67 -89.06 -0.24 -0.85 16 9 H 0.11 0.69 7.97 -51.93 -0.41 0.28 16 10 C 0.06 0.48 6.63 37.82 0.25 0.73 16 11 O -0.35 -3.48 10.95 -38.27 -0.42 -3.90 16 12 C 0.49 4.72 8.63 36.65 0.32 5.04 16 13 O -0.46 -6.13 18.00 -18.37 -0.33 -6.46 16 14 C -0.18 -0.97 6.54 -26.34 -0.17 -1.15 16 15 C -0.09 -1.19 2.08 -90.58 -0.19 -1.38 16 16 C -0.13 -1.96 5.08 -26.61 -0.14 -2.10 16 17 C 0.15 2.91 6.52 -3.71 -0.02 2.89 16 18 N -0.60 -14.11 2.85 -172.58 -0.49 -14.60 16 19 C -0.35 -9.35 9.49 -15.06 -0.14 -9.49 16 20 H 0.06 1.49 7.94 -52.49 -0.42 1.08 16 21 C -0.02 -0.68 4.69 -17.43 -0.08 -0.76 16 22 N -0.92 -26.51 12.42 55.49 0.69 -25.82 16 23 Si 1.06 24.45 29.98 -169.99 -5.10 19.35 16 24 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 3.21 4.66 -3.93 -0.02 3.19 16 28 C -0.13 -2.08 4.70 -26.83 -0.13 -2.20 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 31 H 0.06 0.77 6.38 -51.93 -0.33 0.44 16 32 H 0.40 3.17 7.16 -40.82 -0.29 2.88 16 33 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.35 8.04 -51.93 -0.42 -0.07 16 35 H 0.10 0.61 7.70 -51.93 -0.40 0.21 16 36 H 0.11 0.83 8.07 -51.93 -0.42 0.41 16 37 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.12 0.40 7.91 -51.93 -0.41 -0.01 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 1.05 6.64 -51.93 -0.34 0.71 16 42 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 44 H 0.27 7.79 6.69 -40.82 -0.27 7.52 16 45 H 0.08 1.93 6.31 -51.93 -0.33 1.60 16 46 H 0.01 0.30 7.86 -51.93 -0.41 -0.11 16 47 H 0.04 0.59 6.74 -51.93 -0.35 0.24 16 48 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -33.23 373.58 -8.44 -41.67 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.62 Total: 0.31 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -0.62 Total: -2.42 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.07 Total: -47.50 kcal Atomic # 8 Polarization: -16.37 SS G_CDS: -0.67 Total: -17.03 kcal Atomic # 14 Polarization: 24.45 SS G_CDS: -5.10 Total: 19.35 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.23 -8.44 -41.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677328385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.855 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds