Wall clock time and date at job start Tue Mar 31 2020 14:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46811 * 2 1 4 4 N 1.46498 * 109.47469 * 120.00068 * 2 1 3 5 5 C 1.34775 * 120.00090 * 275.00557 * 4 2 1 6 6 O 1.21282 * 119.99893 * 359.97438 * 5 4 2 7 7 C 1.50700 * 120.00010 * 179.97438 * 5 4 2 8 8 C 1.53002 * 109.47052 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.74869 * 54.30599 * 8 7 5 10 10 C 1.54259 * 110.84743 * 290.83423 * 8 7 5 11 11 O 1.45375 * 106.62847 * 226.61617 * 10 8 7 12 12 C 1.33999 * 111.49720 * 357.72765 * 11 10 8 13 13 O 1.20822 * 125.70044 * 199.68880 * 12 11 10 14 14 C 1.52000 * 108.70814 * 19.51353 * 12 11 10 15 15 C 1.52999 * 109.47357 * 240.00347 * 2 1 3 16 16 C 1.53044 * 109.45897 * 64.99759 * 15 2 1 17 17 C 1.53194 * 109.31228 * 178.61692 * 16 15 2 18 18 N 1.46923 * 108.77818 * 54.63278 * 17 16 15 19 19 C 1.36935 * 120.63013 * 126.37083 * 18 17 16 20 20 H 1.07997 * 120.00003 * 332.24113 * 19 18 17 21 21 C 1.38811 * 119.99848 * 152.25074 * 19 18 17 22 22 N 1.31621 * 119.99881 * 335.23772 * 21 19 18 23 23 Si 1.86805 * 120.00093 * 155.52228 * 21 19 18 24 24 H 1.48497 * 109.47162 * 179.71744 * 23 21 19 25 25 H 1.48501 * 109.46645 * 299.71742 * 23 21 19 26 26 H 1.48500 * 109.47160 * 59.71867 * 23 21 19 27 27 C 1.46924 * 118.73831 * 306.64529 * 18 17 16 28 28 C 1.52763 * 109.00800 * 53.30883 * 27 18 17 29 29 H 1.08995 * 109.47287 * 299.99513 * 1 2 3 30 30 H 1.09000 * 109.46946 * 60.00196 * 1 2 3 31 31 H 1.09006 * 109.46945 * 179.97438 * 1 2 3 32 32 H 0.96997 * 120.00182 * 94.99753 * 4 2 1 33 33 H 1.08998 * 109.47380 * 300.00201 * 7 5 4 34 34 H 1.09003 * 109.47028 * 60.00209 * 7 5 4 35 35 H 1.08994 * 110.03173 * 345.91083 * 10 8 7 36 36 H 1.09000 * 110.02654 * 107.32992 * 10 8 7 37 37 H 1.09003 * 110.89106 * 213.34523 * 14 12 11 38 38 H 1.08998 * 110.66278 * 90.00092 * 14 12 11 39 39 H 1.08995 * 109.44906 * 184.95942 * 15 2 1 40 40 H 1.08996 * 109.49642 * 58.66403 * 16 15 2 41 41 H 1.09001 * 109.52139 * 298.58264 * 16 15 2 42 42 H 1.09006 * 109.58170 * 294.84730 * 17 16 15 43 43 H 1.09001 * 109.58948 * 174.42581 * 17 16 15 44 44 H 0.96997 * 120.00123 * 354.51925 * 22 21 19 45 45 H 1.09002 * 109.59010 * 173.13891 * 27 18 17 46 46 H 1.08994 * 109.59213 * 293.56747 * 27 18 17 47 47 H 1.09003 * 109.56839 * 185.55247 * 28 27 18 48 48 H 1.09000 * 109.39069 * 65.51311 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8589 1.1585 2.4115 7 6 2.6489 -0.7289 3.5877 8 6 2.7010 0.2544 4.7587 9 1 1.7336 0.7357 4.9022 10 6 3.8105 1.3047 4.5448 11 8 4.5435 1.3964 5.7969 12 6 4.0130 0.6012 6.7359 13 8 4.1813 0.7080 7.9276 14 6 3.1599 -0.4562 6.0542 15 6 2.0401 -0.7212 -1.2493 16 6 1.6350 0.0695 -2.4955 17 6 2.1769 -0.6370 -3.7421 18 7 1.7131 -2.0311 -3.7347 19 6 1.0529 -2.5524 -4.8152 20 1 0.4799 -1.9046 -5.4620 21 6 1.1200 -3.9136 -5.0790 22 7 2.1435 -4.6183 -4.6454 23 14 -0.2385 -4.7436 -6.0564 24 1 0.0708 -6.1883 -6.2055 25 1 -1.5303 -4.5853 -5.3412 26 1 -0.3360 -4.1171 -7.3992 27 6 1.9658 -2.8534 -2.5437 28 6 1.4311 -2.1237 -1.3127 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 2.2491 -1.6317 1.1526 33 1 1.9762 -1.5508 3.8325 34 1 3.6481 -1.1213 3.3985 35 1 4.4776 0.9853 3.7442 36 1 3.3681 2.2703 4.2998 37 1 2.3024 -0.7218 6.6726 38 1 3.7555 -1.3384 5.8197 39 1 3.1264 -0.7985 -1.2055 40 1 2.0497 1.0759 -2.4385 41 1 0.5480 0.1266 -2.5533 42 1 3.2667 -0.6144 -3.7301 43 1 1.8087 -0.1341 -4.6363 44 1 2.8888 -4.1745 -4.2113 45 1 1.4582 -3.8125 -2.6473 46 1 3.0378 -3.0153 -2.4320 47 1 1.7006 -2.6783 -0.4138 48 1 0.3459 -2.0464 -1.3808 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677328385.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:45 Heat of formation + Delta-G solvation = -136.588914 kcal Electronic energy + Delta-G solvation = -27974.693674 eV Core-core repulsion = 24028.657573 eV Total energy + Delta-G solvation = -3946.036101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.08908 -41.00497 -39.64859 -38.61878 -37.00024 -35.21472 -34.63426 -32.64563 -31.72601 -30.48004 -29.59322 -28.15464 -26.99355 -24.95951 -24.04690 -22.92706 -22.41455 -21.84307 -20.99473 -20.24213 -19.26166 -18.56027 -17.92770 -17.80756 -17.22087 -16.82186 -16.36432 -16.20905 -15.98870 -15.72012 -15.39557 -15.24871 -14.98484 -14.76980 -14.52035 -14.47158 -14.29623 -13.96076 -13.73261 -13.43066 -13.26941 -12.94978 -12.91789 -12.63461 -12.60512 -12.45206 -12.41392 -12.14129 -11.90531 -11.86111 -11.64250 -11.57098 -11.48145 -11.33642 -11.26157 -10.98268 -10.72028 -10.44838 -10.02168 -8.89444 -8.21970 -5.37169 0.96083 1.59667 1.65885 1.71965 1.85012 2.21126 2.24134 2.67021 2.94706 3.23278 3.24719 3.57307 3.60404 3.70667 3.79089 3.84239 3.98987 4.05367 4.32883 4.36810 4.39633 4.41957 4.50710 4.53668 4.57889 4.60225 4.68876 4.71746 4.75097 4.84077 4.86270 4.93599 4.99827 5.08798 5.10997 5.16940 5.18955 5.29017 5.30900 5.32279 5.57154 5.66940 5.78259 5.86523 6.36344 6.42765 6.63579 7.10362 7.32301 7.81919 8.25529 9.02659 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.028544 B = 0.002190 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.716024 B =12783.075058 C =13107.483961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.077 0.923 4 N -0.716 5.716 5 C 0.508 3.492 6 O -0.580 6.580 7 C -0.126 4.126 8 C -0.098 4.098 9 H 0.101 0.899 10 C 0.061 3.939 11 O -0.374 6.374 12 C 0.479 3.521 13 O -0.506 6.506 14 C -0.165 4.165 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.142 3.858 18 N -0.618 5.618 19 C -0.353 4.353 20 H 0.046 0.954 21 C -0.075 4.075 22 N -0.942 5.942 23 Si 1.111 2.889 24 H -0.292 1.292 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.154 3.846 28 C -0.116 4.116 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.412 0.588 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.148 0.852 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.013 0.987 43 H 0.045 0.955 44 H 0.254 0.746 45 H 0.042 0.958 46 H 0.003 0.997 47 H 0.079 0.921 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 6.668 18.010 19.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.095 0.905 4 N -0.368 5.368 5 C 0.296 3.704 6 O -0.460 6.460 7 C -0.165 4.165 8 C -0.117 4.117 9 H 0.120 0.880 10 C -0.012 4.012 11 O -0.291 6.291 12 C 0.322 3.678 13 O -0.394 6.394 14 C -0.203 4.203 15 C -0.093 4.093 16 C -0.156 4.156 17 C 0.017 3.983 18 N -0.343 5.343 19 C -0.483 4.483 20 H 0.064 0.936 21 C -0.272 4.272 22 N -0.584 5.584 23 Si 0.936 3.064 24 H -0.218 1.218 25 H -0.205 1.205 26 H -0.205 1.205 27 C 0.028 3.972 28 C -0.155 4.155 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.249 0.751 33 H 0.154 0.846 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.031 0.969 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.060 0.940 46 H 0.021 0.979 47 H 0.098 0.902 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.628 6.251 18.002 19.067 hybrid contribution 0.831 1.151 -0.060 1.420 sum 0.203 7.402 17.942 19.410 Atomic orbital electron populations 1.22169 0.95330 1.02332 1.01738 1.20761 0.94039 0.96309 0.83505 0.90487 1.46135 1.66601 1.14808 1.09297 1.21205 0.76801 0.87069 0.85326 1.90708 1.51928 1.17755 1.85624 1.21786 1.06310 0.98993 0.89405 1.22177 1.00089 0.95476 0.93995 0.88050 1.24213 0.93297 1.01985 0.81717 1.86757 1.54149 1.63914 1.24235 1.23989 0.76752 0.81715 0.85317 1.90697 1.60411 1.73621 1.14642 1.23222 1.02151 0.98539 0.96343 1.21167 0.99902 0.94816 0.93438 1.21916 1.01060 0.98423 0.94174 1.21031 0.95375 0.85029 0.96896 1.44352 1.67167 1.09244 1.13545 1.20196 1.25973 0.94906 1.07225 0.93586 1.27091 1.02550 0.95753 1.01791 1.70904 1.06464 1.39357 1.41713 0.82894 0.73389 0.74921 0.75166 1.21818 1.20544 1.20538 1.20760 0.95777 0.94307 0.86336 1.21931 1.00406 0.95678 0.97476 0.92955 0.91869 0.91988 0.75109 0.84619 0.85367 0.87464 0.88835 0.85125 0.83469 0.91174 0.90405 0.92164 0.96918 0.93638 0.93560 0.93953 0.97902 0.90232 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 8.75 71.98 0.63 -2.81 16 2 C 0.16 3.33 2.35 44.99 0.11 3.43 16 3 H 0.08 1.80 7.58 -2.39 -0.02 1.78 16 4 N -0.72 -10.97 5.01 -442.54 -2.22 -13.19 16 5 C 0.51 7.50 7.61 87.66 0.67 8.16 16 6 O -0.58 -13.10 14.87 -3.04 -0.05 -13.14 16 7 C -0.13 -0.68 4.98 29.85 0.15 -0.53 16 8 C -0.10 -0.83 2.67 -9.78 -0.03 -0.86 16 9 H 0.10 1.05 7.97 -2.39 -0.02 1.03 16 10 C 0.06 0.80 6.63 72.41 0.48 1.28 16 11 O -0.37 -7.15 10.95 -49.58 -0.54 -7.69 16 12 C 0.48 8.83 8.63 71.65 0.62 9.44 16 13 O -0.51 -13.64 18.00 21.61 0.39 -13.25 16 14 C -0.16 -1.18 6.54 30.85 0.20 -0.98 16 15 C -0.07 -1.89 2.08 -10.77 -0.02 -1.92 16 16 C -0.12 -3.44 5.08 30.67 0.16 -3.28 16 17 C 0.14 5.57 6.52 86.36 0.56 6.13 16 18 N -0.62 -29.43 2.85 -699.93 -2.00 -31.43 16 19 C -0.35 -19.23 9.49 84.03 0.80 -18.44 16 20 H 0.05 2.54 7.94 -2.91 -0.02 2.51 16 21 C -0.08 -4.18 4.69 84.86 0.40 -3.78 16 22 N -0.94 -55.70 12.42 21.65 0.27 -55.43 16 23 Si 1.11 49.61 29.98 68.60 2.06 51.66 16 24 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 25 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.15 6.58 4.66 86.22 0.40 6.98 16 28 C -0.12 -3.46 4.70 30.53 0.14 -3.32 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.45 6.60 -2.39 -0.02 1.43 16 31 H 0.06 1.36 6.38 -2.38 -0.02 1.35 16 32 H 0.41 4.68 7.16 -92.71 -0.66 4.02 16 33 H 0.14 0.07 8.14 -2.39 -0.02 0.05 16 34 H 0.13 0.14 8.04 -2.39 -0.02 0.12 16 35 H 0.11 1.12 7.70 -2.39 -0.02 1.10 16 36 H 0.09 1.43 8.07 -2.39 -0.02 1.41 16 37 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.15 0.27 7.91 -2.39 -0.02 0.25 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.06 1.86 6.64 -2.39 -0.02 1.84 16 42 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 43 H 0.05 1.83 7.93 -2.39 -0.02 1.81 16 44 H 0.25 15.27 6.69 -92.71 -0.62 14.65 16 45 H 0.04 2.11 6.31 -2.39 -0.02 2.09 16 46 H 0.00 0.13 7.86 -2.39 -0.02 0.11 16 47 H 0.08 1.83 6.74 -2.39 -0.02 1.81 16 48 H 0.06 1.85 6.43 -2.39 -0.02 1.84 16 Total: -1.00 -76.05 373.58 3.63 -72.42 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: 0.45 Total: 10.53 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 5.26 Total: -0.48 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -3.95 Total: -100.06 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -0.20 Total: -34.08 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.06 Total: 51.66 kcal Total: -76.05 3.63 -72.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677328385.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.168 kcal (2) G-P(sol) polarization free energy of solvation -76.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds