Wall clock time and date at job start Tue Mar 31 2020 15:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 O 1.42904 * 109.47247 * 119.99737 * 2 1 3 5 5 C 1.42896 * 113.99895 * 270.00174 * 4 2 1 6 6 C 1.53003 * 109.47044 * 179.97438 * 5 4 2 7 7 H 1.09001 * 110.27340 * 55.64184 * 6 5 4 8 8 C 1.54949 * 110.30751 * 177.83504 * 6 5 4 9 9 C 1.55311 * 100.93958 * 155.36249 * 8 6 5 10 10 C 1.54379 * 102.25157 * 325.86289 * 9 8 6 11 11 O 1.43240 * 107.58801 * 21.35948 * 10 9 8 12 12 C 1.50694 * 109.47462 * 239.99822 * 2 1 3 13 13 O 1.21279 * 120.00286 * 244.99968 * 12 2 1 14 14 N 1.34782 * 120.00181 * 64.99997 * 12 2 1 15 15 C 1.46497 * 120.00292 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.49322 * 9.61326 * 15 14 12 17 17 C 1.52998 * 117.44081 * 224.24019 * 15 14 12 18 18 H 1.08997 * 119.54436 * 4.11179 * 17 15 14 19 19 C 1.54792 * 117.94010 * 160.75480 * 17 15 14 20 20 N 1.48144 * 104.42136 * 87.46074 * 19 17 15 21 21 C 1.36934 * 127.83990 * 140.36569 * 20 19 17 22 22 H 1.07999 * 119.99891 * 338.37584 * 21 20 19 23 23 C 1.38819 * 120.00050 * 158.37202 * 21 20 19 24 24 N 1.31617 * 119.99821 * 335.55641 * 23 21 20 25 25 Si 1.86792 * 119.99988 * 155.55891 * 23 21 20 26 26 H 1.48497 * 109.47419 * 59.99879 * 25 23 21 27 27 H 1.48504 * 109.47529 * 299.99920 * 25 23 21 28 28 H 1.48504 * 109.47241 * 180.02562 * 25 23 21 29 29 C 1.48148 * 104.32455 * 320.10976 * 20 19 17 30 30 C 1.52995 * 117.44428 * 155.00001 * 15 14 12 31 31 H 1.09004 * 119.54245 * 354.28189 * 30 15 14 32 32 H 1.08991 * 109.46964 * 300.00043 * 1 2 3 33 33 H 1.09001 * 109.46853 * 60.00577 * 1 2 3 34 34 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47573 * 299.99949 * 5 4 2 36 36 H 1.09002 * 109.47375 * 60.00228 * 5 4 2 37 37 H 1.09002 * 111.12369 * 273.27782 * 8 6 5 38 38 H 1.08996 * 111.12800 * 37.44504 * 8 6 5 39 39 H 1.09001 * 110.84750 * 207.67814 * 9 8 6 40 40 H 1.08993 * 110.84539 * 84.05684 * 9 8 6 41 41 H 1.09004 * 109.83478 * 261.84571 * 10 9 8 42 42 H 1.09004 * 109.82898 * 140.87222 * 10 9 8 43 43 H 0.97006 * 119.99604 * 0.02562 * 14 12 2 44 44 H 1.09004 * 110.54118 * 328.72153 * 19 17 15 45 45 H 1.08995 * 110.46616 * 206.16385 * 19 17 15 46 46 H 0.97000 * 119.99961 * 354.38145 * 24 23 21 47 47 H 1.09004 * 110.40972 * 158.62513 * 29 20 19 48 48 H 1.08994 * 110.40786 * 280.94497 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6407 3.4792 7 1 3.6140 -1.1803 3.2035 8 6 2.9766 0.2787 4.6973 9 6 2.8310 -0.7323 5.8673 10 6 1.7305 -1.6810 5.3455 11 8 1.6947 -1.5591 3.9188 12 6 2.0324 -0.7104 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2799 -0.8851 -3.6481 16 1 2.6821 -1.8845 -3.4815 17 6 2.9370 -0.0330 -4.7358 18 1 3.0843 1.0337 -4.5672 19 6 3.8463 -0.7464 -5.7656 20 7 2.9193 -1.1860 -6.8342 21 6 3.1289 -1.1698 -8.1873 22 1 3.8722 -0.5105 -8.6106 23 6 2.3861 -2.0007 -9.0148 24 7 1.8560 -3.1052 -8.5338 25 14 2.1391 -1.5514 -10.8110 26 1 3.4593 -1.4612 -11.4848 27 1 1.4460 -0.2412 -10.9028 28 1 1.3149 -2.5942 -11.4733 29 6 1.7164 -1.6533 -6.1066 30 6 1.5343 -0.6349 -4.9604 31 1 0.6221 -0.0382 -4.9549 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 2.9319 0.9514 2.0450 36 1 1.2538 0.6547 2.5589 37 1 3.9833 0.6949 4.6608 38 1 2.2290 1.0689 4.7655 39 1 2.5082 -0.2277 6.7780 40 1 3.7632 -1.2725 6.0314 41 1 0.7661 -1.3950 5.7654 42 1 1.9660 -2.7084 5.6231 43 1 1.2959 0.6348 -2.5392 44 1 4.3375 -1.6067 -5.3108 45 1 4.5860 -0.0530 -6.1656 46 1 2.0511 -3.3807 -7.6244 47 1 0.8471 -1.6448 -6.7642 48 1 1.8792 -2.6538 -5.7060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690525018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:42 Heat of formation + Delta-G solvation = -68.939303 kcal Electronic energy + Delta-G solvation = -27163.319900 eV Core-core repulsion = 23220.217307 eV Total energy + Delta-G solvation = -3943.102594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.24465 -39.78725 -38.73179 -37.43823 -34.66342 -33.12923 -32.62585 -31.95642 -30.53202 -29.83533 -27.37780 -26.05366 -25.54163 -24.29361 -22.16176 -21.74831 -21.67887 -20.56810 -20.11641 -19.44947 -17.65386 -17.48453 -17.38884 -17.04289 -16.21649 -16.05957 -15.59128 -15.29811 -14.60123 -14.52610 -14.02816 -13.83464 -13.74153 -13.59473 -13.56126 -13.14686 -12.87555 -12.70457 -12.50589 -12.33846 -12.19786 -11.90016 -11.81354 -11.67877 -11.55245 -11.49132 -11.24793 -10.79277 -10.69732 -10.56277 -10.26888 -10.17090 -10.03690 -9.83713 -9.63910 -9.58120 -9.23284 -8.60280 -8.40233 -6.99963 -6.13395 -3.19740 2.55357 2.63903 3.37635 3.49145 3.52413 3.56305 3.71108 3.98872 4.17322 4.35281 4.41695 4.49705 4.56553 4.62040 4.68126 4.71265 4.80663 4.89904 4.99559 5.02357 5.08440 5.19999 5.22579 5.26364 5.30105 5.30491 5.40028 5.41146 5.43417 5.51186 5.67422 5.71731 5.78018 5.84343 5.92583 6.11130 6.37702 6.59456 6.61444 6.68491 6.75495 6.85329 6.96154 6.98737 7.49932 7.73839 8.23119 8.43968 8.96578 9.77467 10.40489 11.22258 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.041234 B = 0.001848 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.885998 B =15151.435351 C =15179.543663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.073 3.927 3 H 0.085 0.915 4 O -0.346 6.346 5 C 0.061 3.939 6 C 0.084 3.916 7 H 0.082 0.918 8 C -0.150 4.150 9 C -0.155 4.155 10 C 0.047 3.953 11 O -0.368 6.368 12 C 0.515 3.485 13 O -0.514 6.514 14 N -0.697 5.697 15 C 0.100 3.900 16 H 0.132 0.868 17 C -0.178 4.178 18 H 0.105 0.895 19 C 0.155 3.845 20 N -0.596 5.596 21 C -0.332 4.332 22 H 0.065 0.935 23 C -0.026 4.026 24 N -0.917 5.917 25 Si 1.071 2.929 26 H -0.292 1.292 27 H -0.293 1.293 28 H -0.284 1.284 29 C 0.166 3.834 30 C -0.176 4.176 31 H 0.107 0.893 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.058 0.942 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.079 0.921 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.398 0.602 44 H 0.027 0.973 45 H 0.054 0.946 46 H 0.269 0.731 47 H 0.068 0.932 48 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.706 11.686 28.317 30.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.264 6.264 5 C -0.016 4.016 6 C 0.026 3.974 7 H 0.100 0.900 8 C -0.187 4.187 9 C -0.193 4.193 10 C -0.030 4.030 11 O -0.287 6.287 12 C 0.300 3.700 13 O -0.388 6.388 14 N -0.347 5.347 15 C -0.006 4.006 16 H 0.150 0.850 17 C -0.200 4.200 18 H 0.123 0.877 19 C 0.028 3.972 20 N -0.321 5.321 21 C -0.459 4.459 22 H 0.083 0.917 23 C -0.228 4.228 24 N -0.557 5.557 25 Si 0.900 3.100 26 H -0.219 1.219 27 H -0.221 1.221 28 H -0.210 1.210 29 C 0.039 3.961 30 C -0.197 4.197 31 H 0.125 0.875 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.232 0.768 44 H 0.045 0.955 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.087 0.913 48 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -2.079 10.139 26.703 28.638 hybrid contribution 0.601 1.474 1.628 2.277 sum -1.478 11.613 28.331 30.654 Atomic orbital electron populations 1.22225 0.93369 1.04219 1.02927 1.21874 0.95269 0.95990 0.85729 0.89771 1.88133 1.86440 1.33431 1.18392 1.22776 1.00169 0.92602 0.86018 1.22986 0.91980 0.89909 0.92522 0.90008 1.23256 1.03420 0.98369 0.93704 1.23119 0.99976 0.97291 0.98893 1.23151 0.98641 0.99511 0.81660 1.88555 1.55450 1.64479 1.20263 1.20313 0.79961 0.85732 0.83973 1.90740 1.38950 1.22887 1.86193 1.45286 1.57364 1.27252 1.04833 1.21813 1.01556 0.97471 0.79747 0.85042 1.24464 0.96968 0.98912 0.99615 0.87690 1.21201 0.91852 0.95881 0.88247 1.45272 1.10447 1.75004 1.01337 1.19736 1.25367 1.20925 0.79901 0.91716 1.25901 0.98883 0.92917 1.05082 1.70764 1.46837 1.19294 1.18778 0.83445 0.76230 0.75469 0.74877 1.21913 1.22061 1.20991 1.21126 0.91989 0.92870 0.90095 1.24389 0.95519 1.04334 0.95502 0.87539 0.91255 0.90927 0.90759 0.91824 0.92388 0.89421 0.90040 0.89826 0.90276 0.91337 0.91314 0.76773 0.95507 0.92767 0.91991 0.91315 0.95349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.07 0.78 3.13 -27.89 -0.09 0.70 16 3 H 0.08 0.64 7.79 -51.93 -0.40 0.23 16 4 O -0.35 -4.49 9.52 -58.37 -0.56 -5.05 16 5 C 0.06 0.54 5.46 37.16 0.20 0.74 16 6 C 0.08 0.74 3.73 -25.70 -0.10 0.65 16 7 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 8 C -0.15 -0.80 6.57 -24.48 -0.16 -0.96 16 9 C -0.16 -0.78 7.02 -24.78 -0.17 -0.95 16 10 C 0.05 0.34 7.79 37.88 0.30 0.64 16 11 O -0.37 -4.10 11.03 -36.86 -0.41 -4.51 16 12 C 0.52 7.56 7.18 -10.99 -0.08 7.48 16 13 O -0.51 -10.14 16.07 -14.30 -0.23 -10.37 16 14 N -0.70 -9.19 5.52 -53.81 -0.30 -9.49 16 15 C 0.10 1.68 5.97 -67.94 -0.41 1.28 16 16 H 0.13 2.56 7.40 -51.93 -0.38 2.17 16 17 C -0.18 -3.16 7.08 -89.01 -0.63 -3.79 16 18 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 19 C 0.15 3.34 7.06 -2.19 -0.02 3.32 16 20 N -0.60 -15.42 3.22 -168.60 -0.54 -15.96 16 21 C -0.33 -9.47 10.19 -15.06 -0.15 -9.62 16 22 H 0.07 1.83 7.94 -52.49 -0.42 1.41 16 23 C -0.03 -0.75 5.12 -17.43 -0.09 -0.84 16 24 N -0.92 -28.02 12.82 55.49 0.71 -27.31 16 25 Si 1.07 25.41 29.98 -169.99 -5.10 20.31 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 28 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.17 3.90 5.00 -2.40 -0.01 3.89 16 30 C -0.18 -3.23 7.06 -89.22 -0.63 -3.86 16 31 H 0.11 1.74 8.14 -51.93 -0.42 1.32 16 32 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 33 H 0.07 0.50 7.93 -51.93 -0.41 0.09 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.06 0.43 7.87 -51.93 -0.41 0.02 16 37 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.08 0.37 8.06 -51.93 -0.42 -0.05 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.40 3.88 8.61 -40.82 -0.35 3.53 16 44 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.27 8.29 6.42 -40.82 -0.26 8.03 16 47 H 0.07 1.77 7.47 -51.93 -0.39 1.38 16 48 H 0.03 0.70 7.66 -51.93 -0.40 0.31 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -36.40 389.96 -10.34 -46.74 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -8.12 Total: 2.22 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.68 Total: -2.45 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: -0.13 Total: -52.76 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -1.19 Total: -19.93 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.10 Total: 20.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.40 -10.34 -46.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690525018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.201 kcal (2) G-P(sol) polarization free energy of solvation -36.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds