Wall clock time and date at job start Tue Mar 31 2020 15:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09007 * 109.46951 * 2 1 4 4 O 1.42904 * 109.47247 * 119.99737 * 2 1 3 5 5 C 1.42896 * 113.99895 * 270.00174 * 4 2 1 6 6 C 1.53003 * 109.47044 * 179.97438 * 5 4 2 7 7 H 1.09001 * 110.27340 * 55.64184 * 6 5 4 8 8 C 1.54949 * 110.30751 * 177.83504 * 6 5 4 9 9 C 1.55311 * 100.93958 * 155.36249 * 8 6 5 10 10 C 1.54379 * 102.25157 * 325.86289 * 9 8 6 11 11 O 1.43240 * 107.58801 * 21.35948 * 10 9 8 12 12 C 1.50694 * 109.47462 * 239.99822 * 2 1 3 13 13 O 1.21279 * 120.00286 * 244.99968 * 12 2 1 14 14 N 1.34782 * 120.00181 * 64.99997 * 12 2 1 15 15 C 1.46497 * 120.00292 * 180.02562 * 14 12 2 16 16 H 1.09006 * 115.49322 * 9.61326 * 15 14 12 17 17 C 1.52998 * 117.44081 * 224.24019 * 15 14 12 18 18 H 1.08997 * 119.54436 * 4.11179 * 17 15 14 19 19 C 1.54792 * 117.94010 * 160.75480 * 17 15 14 20 20 N 1.48144 * 104.42136 * 87.46074 * 19 17 15 21 21 C 1.36934 * 127.83990 * 140.36569 * 20 19 17 22 22 H 1.07999 * 119.99891 * 338.37584 * 21 20 19 23 23 C 1.38819 * 120.00050 * 158.37202 * 21 20 19 24 24 N 1.31617 * 119.99821 * 335.55641 * 23 21 20 25 25 Si 1.86792 * 119.99988 * 155.55891 * 23 21 20 26 26 H 1.48497 * 109.47419 * 59.99879 * 25 23 21 27 27 H 1.48504 * 109.47529 * 299.99920 * 25 23 21 28 28 H 1.48504 * 109.47241 * 180.02562 * 25 23 21 29 29 C 1.48148 * 104.32455 * 320.10976 * 20 19 17 30 30 C 1.52995 * 117.44428 * 155.00001 * 15 14 12 31 31 H 1.09004 * 119.54245 * 354.28189 * 30 15 14 32 32 H 1.08991 * 109.46964 * 300.00043 * 1 2 3 33 33 H 1.09001 * 109.46853 * 60.00577 * 1 2 3 34 34 H 1.08998 * 109.46810 * 180.02562 * 1 2 3 35 35 H 1.08999 * 109.47573 * 299.99949 * 5 4 2 36 36 H 1.09002 * 109.47375 * 60.00228 * 5 4 2 37 37 H 1.09002 * 111.12369 * 273.27782 * 8 6 5 38 38 H 1.08996 * 111.12800 * 37.44504 * 8 6 5 39 39 H 1.09001 * 110.84750 * 207.67814 * 9 8 6 40 40 H 1.08993 * 110.84539 * 84.05684 * 9 8 6 41 41 H 1.09004 * 109.83478 * 261.84571 * 10 9 8 42 42 H 1.09004 * 109.82898 * 140.87222 * 10 9 8 43 43 H 0.97006 * 119.99604 * 0.02562 * 14 12 2 44 44 H 1.09004 * 110.54118 * 328.72153 * 19 17 15 45 45 H 1.08995 * 110.46616 * 206.16385 * 19 17 15 46 46 H 0.97000 * 119.99961 * 354.38145 * 24 23 21 47 47 H 1.09004 * 110.40972 * 158.62513 * 29 20 19 48 48 H 1.08994 * 110.40786 * 280.94497 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2940 6 6 2.7079 -0.6407 3.4792 7 1 3.6140 -1.1803 3.2035 8 6 2.9766 0.2787 4.6973 9 6 2.8310 -0.7323 5.8673 10 6 1.7305 -1.6810 5.3455 11 8 1.6947 -1.5591 3.9188 12 6 2.0324 -0.7104 -1.2304 13 8 2.6531 -1.7466 -1.1214 14 7 1.7920 -0.1942 -2.4520 15 6 2.2799 -0.8851 -3.6481 16 1 2.6821 -1.8845 -3.4815 17 6 2.9370 -0.0330 -4.7358 18 1 3.0843 1.0337 -4.5672 19 6 3.8463 -0.7464 -5.7656 20 7 2.9193 -1.1860 -6.8342 21 6 3.1289 -1.1698 -8.1873 22 1 3.8722 -0.5105 -8.6106 23 6 2.3861 -2.0007 -9.0148 24 7 1.8560 -3.1052 -8.5338 25 14 2.1391 -1.5514 -10.8110 26 1 3.4593 -1.4612 -11.4848 27 1 1.4460 -0.2412 -10.9028 28 1 1.3149 -2.5942 -11.4733 29 6 1.7164 -1.6533 -6.1066 30 6 1.5343 -0.6349 -4.9604 31 1 0.6221 -0.0382 -4.9549 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 -0.3633 -1.0277 0.0005 35 1 2.9319 0.9514 2.0450 36 1 1.2538 0.6547 2.5589 37 1 3.9833 0.6949 4.6608 38 1 2.2290 1.0689 4.7655 39 1 2.5082 -0.2277 6.7780 40 1 3.7632 -1.2725 6.0314 41 1 0.7661 -1.3950 5.7654 42 1 1.9660 -2.7084 5.6231 43 1 1.2959 0.6348 -2.5392 44 1 4.3375 -1.6067 -5.3108 45 1 4.5860 -0.0530 -6.1656 46 1 2.0511 -3.3807 -7.6244 47 1 0.8471 -1.6448 -6.7642 48 1 1.8792 -2.6538 -5.7060 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690525018.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:40 Heat of formation + Delta-G solvation = -94.460537 kcal Electronic energy + Delta-G solvation = -27164.426584 eV Core-core repulsion = 23220.217307 eV Total energy + Delta-G solvation = -3944.209277 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 324.188 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.40988 -40.56214 -40.08290 -38.42817 -36.33758 -34.66393 -33.27256 -32.90592 -31.85406 -30.89273 -29.17505 -27.48342 -26.60744 -25.35564 -23.44378 -22.55623 -22.29167 -22.05109 -21.43171 -21.04293 -19.53567 -18.46998 -18.40489 -17.91304 -17.18135 -16.86485 -16.44934 -16.28453 -15.97130 -15.76593 -15.44299 -15.36165 -15.28013 -15.00051 -14.49560 -14.17359 -13.95810 -13.65751 -13.51272 -13.40168 -13.30630 -13.08179 -12.66916 -12.64012 -12.55452 -12.49958 -12.32868 -12.19348 -12.08353 -11.91951 -11.86550 -11.69829 -11.63992 -11.09551 -10.90472 -10.65109 -10.53773 -10.48874 -9.84124 -9.12485 -8.39895 -5.43221 1.40639 1.56998 1.60022 1.67316 1.85448 2.60873 2.69561 2.71745 2.88286 3.16882 3.42379 3.52095 3.55963 3.67093 3.76464 3.83586 3.93428 3.96430 3.98463 4.01182 4.13756 4.23909 4.25933 4.28807 4.36860 4.47416 4.58523 4.66996 4.67464 4.69106 4.79145 4.80768 4.83463 4.88356 4.96613 4.97018 5.00051 5.13964 5.18753 5.19680 5.23252 5.39726 5.60617 5.99666 6.15815 6.22926 6.47659 6.77059 7.14246 7.61496 8.28564 8.95373 Molecular weight = 324.19amu Principal moments of inertia in cm(-1) A = 0.041234 B = 0.001848 C = 0.001844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.885998 B =15151.435351 C =15179.543663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.128 0.872 4 O -0.388 6.388 5 C 0.057 3.943 6 C 0.072 3.928 7 H 0.060 0.940 8 C -0.139 4.139 9 C -0.150 4.150 10 C 0.036 3.964 11 O -0.405 6.405 12 C 0.511 3.489 13 O -0.575 6.575 14 N -0.676 5.676 15 C 0.117 3.883 16 H 0.099 0.901 17 C -0.159 4.159 18 H 0.143 0.857 19 C 0.146 3.854 20 N -0.621 5.621 21 C -0.341 4.341 22 H 0.066 0.934 23 C -0.081 4.081 24 N -0.947 5.947 25 Si 1.125 2.875 26 H -0.273 1.273 27 H -0.275 1.275 28 H -0.292 1.292 29 C 0.168 3.832 30 C -0.170 4.170 31 H 0.139 0.861 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.103 0.897 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.422 0.578 44 H 0.013 0.987 45 H 0.063 0.937 46 H 0.251 0.749 47 H 0.040 0.960 48 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 15.711 29.784 33.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.018 3.982 3 H 0.145 0.855 4 O -0.307 6.307 5 C -0.019 4.019 6 C 0.014 3.986 7 H 0.078 0.922 8 C -0.176 4.176 9 C -0.187 4.187 10 C -0.040 4.040 11 O -0.326 6.326 12 C 0.299 3.701 13 O -0.452 6.452 14 N -0.328 5.328 15 C 0.009 3.991 16 H 0.117 0.883 17 C -0.180 4.180 18 H 0.161 0.839 19 C 0.020 3.980 20 N -0.346 5.346 21 C -0.469 4.469 22 H 0.083 0.917 23 C -0.277 4.277 24 N -0.589 5.589 25 Si 0.948 3.052 26 H -0.198 1.198 27 H -0.201 1.201 28 H -0.218 1.218 29 C 0.042 3.958 30 C -0.191 4.191 31 H 0.156 0.844 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.124 0.876 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.082 0.918 43 H 0.260 0.740 44 H 0.031 0.969 45 H 0.081 0.919 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -2.593 14.233 28.216 31.709 hybrid contribution 0.831 0.138 1.261 1.517 sum -1.761 14.371 29.478 32.841 Atomic orbital electron populations 1.22237 0.91690 1.03134 1.05205 1.21993 0.96266 0.96854 0.83116 0.85478 1.88100 1.86873 1.35853 1.19837 1.23026 1.01757 0.92521 0.84628 1.23156 0.90806 0.90378 0.94237 0.92218 1.23250 1.04800 0.97965 0.91629 1.23130 0.99190 0.96828 0.99594 1.23347 1.00180 1.00131 0.80330 1.88514 1.56200 1.65483 1.22363 1.21247 0.78625 0.85022 0.85255 1.90723 1.41761 1.25719 1.87041 1.45030 1.56921 1.27607 1.03230 1.21317 1.00527 0.96546 0.80683 0.88301 1.24341 0.94836 1.00304 0.98498 0.83891 1.21336 0.92354 0.95889 0.88384 1.45572 1.12298 1.75181 1.01548 1.20065 1.25071 1.20248 0.81522 0.91667 1.27446 0.98745 0.92335 1.09130 1.70896 1.48883 1.21079 1.18034 0.82739 0.76989 0.75537 0.69940 1.19836 1.20097 1.21834 1.20944 0.90305 0.93322 0.91266 1.24147 0.97291 1.03098 0.94556 0.84350 0.89065 0.88543 0.93526 0.89361 0.90701 0.87814 0.88546 0.87643 0.90180 0.90340 0.91768 0.73997 0.96935 0.91904 0.93864 0.94143 0.98013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.08 1.48 3.13 29.85 0.09 1.58 16 3 H 0.13 1.31 7.79 -2.38 -0.02 1.29 16 4 O -0.39 -9.69 9.52 -126.86 -1.21 -10.90 16 5 C 0.06 0.88 5.46 71.98 0.39 1.27 16 6 C 0.07 1.22 3.73 31.26 0.12 1.34 16 7 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 8 C -0.14 -1.15 6.57 32.05 0.21 -0.94 16 9 C -0.15 -1.23 7.02 31.86 0.22 -1.01 16 10 C 0.04 0.51 7.79 72.45 0.56 1.08 16 11 O -0.41 -9.09 11.03 -147.42 -1.63 -10.71 16 12 C 0.51 14.38 7.18 87.65 0.63 15.01 16 13 O -0.57 -23.28 16.07 15.97 0.26 -23.02 16 14 N -0.68 -16.12 5.52 -442.55 -2.44 -18.56 16 15 C 0.12 3.82 5.97 44.99 0.27 4.09 16 16 H 0.10 4.00 7.40 -2.38 -0.02 3.99 16 17 C -0.16 -5.30 7.08 -9.75 -0.07 -5.37 16 18 H 0.14 3.79 8.14 -2.39 -0.02 3.77 16 19 C 0.15 6.31 7.06 86.67 0.61 6.92 16 20 N -0.62 -32.79 3.22 -687.34 -2.21 -35.00 16 21 C -0.34 -19.74 10.19 84.04 0.86 -18.88 16 22 H 0.07 3.69 7.94 -2.91 -0.02 3.66 16 23 C -0.08 -4.76 5.12 84.86 0.43 -4.33 16 24 N -0.95 -60.06 12.82 21.65 0.28 -59.78 16 25 Si 1.13 51.46 29.98 68.60 2.06 53.52 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 29 C 0.17 8.19 5.00 86.54 0.43 8.62 16 30 C -0.17 -6.03 7.06 -9.89 -0.07 -6.10 16 31 H 0.14 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.09 0.96 7.87 -2.39 -0.02 0.94 16 33 H 0.10 0.92 7.93 -2.39 -0.02 0.90 16 34 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.88 8.08 -2.39 -0.02 0.86 16 36 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.53 8.06 -2.39 -0.02 0.51 16 39 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.42 6.30 8.61 -92.70 -0.80 5.50 16 44 H 0.01 0.58 8.14 -2.38 -0.02 0.57 16 45 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 46 H 0.25 16.41 6.42 -92.71 -0.59 15.81 16 47 H 0.04 2.16 7.47 -2.38 -0.02 2.15 16 48 H 0.00 0.11 7.66 -2.39 -0.02 0.09 16 Total: -1.00 -85.51 389.96 0.80 -84.71 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: 0.32 Total: 18.20 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.38 Total: 1.55 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -4.38 Total: -113.35 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -2.58 Total: -44.64 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal Total: -85.51 0.80 -84.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690525018.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.750 kcal (2) G-P(sol) polarization free energy of solvation -85.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds