Wall clock time and date at job start Tue Mar 31 2020 13:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46704 * 2 1 4 4 C 1.53003 * 109.47038 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47243 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47243 * 180.02562 * 5 4 3 7 7 C 1.53003 * 109.47214 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.46985 * 304.99953 * 7 6 5 9 9 C 1.53000 * 109.46987 * 184.99930 * 7 6 5 10 10 N 1.46500 * 109.47073 * 64.99899 * 7 6 5 11 11 C 1.34774 * 119.99630 * 205.00195 * 10 7 6 12 12 O 1.21349 * 120.00173 * 359.97438 * 11 10 7 13 13 C 1.49453 * 119.99846 * 180.02562 * 11 10 7 14 14 O 1.21353 * 120.00125 * 5.08748 * 13 11 10 15 15 N 1.34774 * 120.00102 * 185.09319 * 13 11 10 16 16 C 1.46494 * 120.00151 * 184.55658 * 15 13 11 17 17 C 1.53003 * 109.47491 * 184.70074 * 16 15 13 18 18 C 1.50708 * 115.54705 * 294.79992 * 17 16 15 19 19 H 1.07999 * 119.99435 * 121.52691 * 18 17 16 20 20 C 1.37869 * 119.99831 * 301.24568 * 18 17 16 21 21 N 1.31521 * 120.00014 * 173.16061 * 20 18 17 22 22 Si 1.86803 * 120.00258 * 353.16421 * 20 18 17 23 23 H 1.48495 * 109.47128 * 94.23742 * 22 20 18 24 24 H 1.48501 * 109.46955 * 214.24149 * 22 20 18 25 25 H 1.48500 * 109.46890 * 334.23636 * 22 20 18 26 26 C 1.53001 * 117.49727 * 80.46616 * 17 16 15 27 27 C 1.52994 * 117.50267 * 149.12521 * 17 16 15 28 28 H 1.08994 * 109.47664 * 59.99750 * 1 2 3 29 29 H 1.09000 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47180 * 299.99101 * 1 2 3 31 31 H 1.08999 * 109.47180 * 240.00899 * 2 1 3 32 32 H 1.08994 * 109.47664 * 120.00250 * 2 1 3 33 33 H 1.09003 * 109.47086 * 60.01054 * 3 2 1 34 34 H 1.08997 * 109.47758 * 300.00544 * 3 2 1 35 35 H 1.08994 * 109.47002 * 59.99958 * 4 3 2 36 36 H 1.09011 * 109.47011 * 300.00374 * 4 3 2 37 37 H 1.09003 * 109.47363 * 59.99840 * 5 4 3 38 38 H 1.08997 * 109.47237 * 300.00011 * 5 4 3 39 39 H 1.09003 * 109.47071 * 59.99662 * 6 5 4 40 40 H 1.09003 * 109.46670 * 299.99861 * 6 5 4 41 41 H 1.08998 * 109.47277 * 299.99844 * 9 7 6 42 42 H 1.08999 * 109.47097 * 59.99751 * 9 7 6 43 43 H 1.09000 * 109.47203 * 179.97438 * 9 7 6 44 44 H 0.96995 * 120.00213 * 25.00401 * 10 7 6 45 45 H 0.97001 * 120.00152 * 4.55797 * 15 13 11 46 46 H 1.08998 * 109.47592 * 64.70314 * 16 15 13 47 47 H 1.08995 * 109.47447 * 304.69904 * 16 15 13 48 48 H 0.97002 * 120.00052 * 180.02562 * 21 20 18 49 49 H 1.09004 * 117.49881 * 215.00573 * 26 17 16 50 50 H 1.08997 * 117.49907 * 0.02562 * 26 17 16 51 51 H 1.09000 * 117.50159 * 359.97438 * 27 17 16 52 52 H 1.08998 * 117.50086 * 144.97404 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8851 0.0000 6 6 5.6099 2.8852 -0.0013 7 6 6.1198 4.3277 0.0000 8 1 5.6844 4.8677 -0.8408 9 6 7.6445 4.3297 -0.1270 10 7 5.7332 4.9812 1.2529 11 6 5.6064 6.3221 1.3023 12 8 5.8128 6.9881 0.3091 13 6 5.2126 6.9888 2.5806 14 8 5.0970 6.3342 3.5958 15 7 4.9857 8.3171 2.6057 16 6 4.6976 8.9870 3.8763 17 6 4.3655 10.4573 3.6138 18 6 5.4935 11.2897 3.0605 19 1 5.3768 11.7958 2.1136 20 6 6.6720 11.4096 3.7659 21 7 7.7026 12.0221 3.2251 22 14 6.8050 10.7022 5.4896 23 1 7.3799 9.3348 5.4205 24 1 7.6858 11.5685 6.3136 25 1 5.4549 10.6410 6.1051 26 6 2.9472 10.7884 3.1450 27 6 3.3851 11.1415 4.5685 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9565 -0.8899 35 1 3.9328 0.9290 -0.8908 36 1 3.9337 0.9286 0.8892 37 1 3.7168 3.3985 0.8904 38 1 3.7161 3.3995 -0.8895 39 1 5.9725 2.3720 -0.8920 40 1 5.9739 2.3707 0.8881 41 1 8.0799 3.7898 0.7138 42 1 7.9321 3.8435 -1.0592 43 1 8.0078 5.3574 -0.1265 44 1 5.5686 4.4489 2.0469 45 1 5.0130 8.8295 1.7826 46 1 5.5695 8.9222 4.5272 47 1 3.8480 8.5031 4.3578 48 1 8.5319 12.1062 3.7213 49 1 2.8300 11.6082 2.4363 50 1 2.2507 9.9588 3.0238 51 1 2.9762 10.5440 5.3834 52 1 3.5561 12.1935 4.7968 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327740607.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:35 Heat of formation + Delta-G solvation = -85.349857 kcal Electronic energy + Delta-G solvation = -27642.857551 eV Core-core repulsion = 23834.876437 eV Total energy + Delta-G solvation = -3807.981114 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.39556 -38.60576 -37.27788 -37.00970 -35.90065 -33.68775 -32.97773 -32.21386 -31.06654 -28.48481 -27.45245 -25.60116 -24.83985 -23.65320 -21.74125 -21.55895 -21.30032 -20.79470 -20.04126 -19.42614 -18.07720 -16.86448 -16.43559 -16.16217 -15.75398 -15.52170 -15.00715 -14.87048 -14.60771 -14.41834 -14.12110 -13.83927 -13.73104 -13.55769 -13.19527 -12.97001 -12.95138 -12.80768 -12.45332 -12.30583 -12.16186 -12.00613 -11.82770 -11.72209 -11.34619 -11.25885 -11.16001 -11.07451 -10.97588 -10.76999 -10.72580 -10.60516 -10.57828 -10.30620 -9.65026 -9.29690 -9.22877 -9.18156 -8.89790 -8.51431 -8.45212 -6.19037 -4.20826 1.76182 2.65526 3.24510 3.35401 3.39736 3.55986 3.97016 4.22650 4.35143 4.55356 4.62054 4.69666 4.74008 4.78819 4.85417 4.99328 5.04063 5.16217 5.18925 5.22764 5.26015 5.41463 5.46734 5.48259 5.49404 5.59856 5.60185 5.67180 5.68897 5.76399 5.80065 5.87265 5.88520 5.96721 6.05055 6.08002 6.09280 6.10895 6.12272 6.35101 6.37609 6.44259 6.64681 6.79662 6.89728 7.07421 7.24429 7.63589 7.80923 8.10899 8.39176 8.44568 8.84063 9.43605 10.92016 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014664 B = 0.002570 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.981963 B =10893.154336 C =11975.264542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.126 4.126 7 C 0.139 3.861 8 H 0.092 0.908 9 C -0.166 4.166 10 N -0.701 5.701 11 C 0.509 3.491 12 O -0.513 6.513 13 C 0.496 3.504 14 O -0.542 6.542 15 N -0.665 5.665 16 C 0.149 3.851 17 C -0.019 4.019 18 C -0.490 4.490 19 H 0.080 0.920 20 C 0.082 3.918 21 N -0.888 5.888 22 Si 0.867 3.133 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.251 1.251 26 C -0.179 4.179 27 C -0.186 4.186 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.066 0.934 43 H 0.064 0.936 44 H 0.410 0.590 45 H 0.420 0.580 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.266 0.734 49 H 0.087 0.913 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.135 -22.404 -6.434 24.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.164 4.164 7 C 0.035 3.965 8 H 0.110 0.890 9 C -0.224 4.224 10 N -0.356 5.356 11 C 0.290 3.710 12 O -0.388 6.388 13 C 0.276 3.724 14 O -0.421 6.421 15 N -0.315 5.315 16 C 0.026 3.974 17 C -0.020 4.020 18 C -0.527 4.527 19 H 0.098 0.902 20 C -0.122 4.122 21 N -0.524 5.524 22 Si 0.695 3.305 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.175 1.175 26 C -0.217 4.217 27 C -0.225 4.225 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.246 0.754 45 H 0.257 0.743 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.105 0.895 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.854 -22.272 -6.421 24.473 hybrid contribution 0.279 -0.286 1.009 1.085 sum -7.575 -22.558 -5.412 24.404 Atomic orbital electron populations 1.21786 0.95983 1.01482 1.01904 1.21536 0.95827 0.97054 1.01838 1.21643 0.95488 0.96625 1.02247 1.21600 0.95379 0.96714 1.01938 1.21642 0.94825 0.96868 1.02758 1.21918 0.96119 0.95121 1.03227 1.21087 0.95259 0.93085 0.87033 0.89041 1.22201 0.95055 1.03153 1.02032 1.45849 1.69166 1.06366 1.14210 1.20342 0.78347 0.83183 0.89121 1.90774 1.48219 1.63844 1.35929 1.20042 0.79776 0.83836 0.88753 1.90703 1.52199 1.64368 1.34878 1.45737 1.66179 1.06508 1.13074 1.21288 0.99582 0.92611 0.83913 1.19582 0.90718 0.90961 1.00728 1.20259 0.95571 1.29595 1.07293 0.90179 1.24936 0.95220 0.94312 0.97696 1.69897 1.02596 1.42480 1.37407 0.87045 0.79267 0.78710 0.85450 1.20476 1.21764 1.17485 1.22796 0.98500 1.02491 0.97876 1.23071 1.06113 1.01351 0.91917 0.92774 0.92911 0.92696 0.92198 0.92129 0.91912 0.92029 0.92090 0.92022 0.91576 0.91762 0.90196 0.91187 0.92315 0.91494 0.91651 0.75418 0.74270 0.92069 0.92399 0.92400 0.89460 0.90816 0.91081 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.91 37.16 0.37 -0.58 16 2 C -0.12 -0.79 5.93 -26.73 -0.16 -0.95 16 3 C -0.12 -0.85 5.21 -26.73 -0.14 -0.99 16 4 C -0.12 -0.79 5.21 -26.73 -0.14 -0.93 16 5 C -0.12 -0.95 5.10 -26.73 -0.14 -1.09 16 6 C -0.13 -0.92 4.75 -26.73 -0.13 -1.05 16 7 C 0.14 1.42 2.57 -67.93 -0.17 1.25 16 8 H 0.09 1.05 7.58 -51.93 -0.39 0.65 16 9 C -0.17 -1.67 9.48 37.16 0.35 -1.31 16 10 N -0.70 -8.78 4.52 -54.23 -0.25 -9.02 16 11 C 0.51 8.43 7.85 -11.59 -0.09 8.34 16 12 O -0.51 -9.64 16.16 5.50 0.09 -9.55 16 13 C 0.50 9.36 7.88 -11.58 -0.09 9.26 16 14 O -0.54 -10.85 16.47 5.49 0.09 -10.76 16 15 N -0.66 -13.40 5.46 -60.73 -0.33 -13.73 16 16 C 0.15 3.18 5.08 -4.04 -0.02 3.16 16 17 C -0.02 -0.41 0.85 -155.66 -0.13 -0.54 16 18 C -0.49 -13.00 9.19 -34.44 -0.32 -13.32 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 20 C 0.08 2.29 5.46 -17.82 -0.10 2.19 16 21 N -0.89 -26.37 13.96 55.43 0.77 -25.59 16 22 Si 0.87 21.25 24.70 -169.99 -4.20 17.05 16 23 H -0.28 -6.92 6.96 56.52 0.39 -6.52 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 H -0.25 -5.75 6.11 56.52 0.35 -5.41 16 26 C -0.18 -3.44 9.96 -26.70 -0.27 -3.70 16 27 C -0.19 -3.74 8.69 -26.70 -0.23 -3.97 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.41 4.67 8.08 -40.82 -0.33 4.34 16 45 H 0.42 8.54 7.83 -40.82 -0.32 8.22 16 46 H 0.06 1.43 4.27 -51.93 -0.22 1.21 16 47 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 48 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 51 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 52 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 LS Contribution 419.23 15.07 6.32 6.32 Total: -1.00 -30.36 419.23 -8.65 -39.01 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: -9.74 Total: 10.53 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.40 Total: -4.24 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.20 Total: -48.35 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.18 Total: -20.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.20 Total: 17.05 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -30.36 -8.65 -39.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327740607.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.344 kcal (2) G-P(sol) polarization free energy of solvation -30.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds