Wall clock time and date at job start Tue Mar 31 2020 15:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47350 * 120.00356 * 2 1 3 5 5 H 1.08999 * 112.43012 * 309.89981 * 4 2 1 6 6 N 1.46516 * 113.09643 * 79.50341 * 4 2 1 7 7 C 1.46498 * 134.66315 * 295.35056 * 6 4 2 8 8 N 1.46896 * 109.47441 * 72.56050 * 7 6 4 9 9 C 1.46900 * 111.00256 * 209.47649 * 8 7 6 10 10 C 1.50696 * 109.47257 * 163.55246 * 9 8 7 11 11 H 1.08003 * 120.00336 * 3.76618 * 10 9 8 12 12 C 1.37877 * 120.00236 * 183.76930 * 10 9 8 13 13 N 1.31523 * 119.99791 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00308 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.46902 * 60.00386 * 14 12 10 16 16 H 1.48504 * 109.47169 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47264 * 299.99996 * 14 12 10 18 18 C 1.46900 * 110.99991 * 85.51694 * 8 7 6 19 19 C 1.52998 * 109.47114 * 282.71650 * 18 8 7 20 20 C 1.53006 * 109.46880 * 42.71797 * 18 8 7 21 21 C 1.34797 * 90.67181 * 115.60196 * 6 4 2 22 22 O 1.21281 * 132.00538 * 179.76008 * 21 6 4 23 23 C 1.49824 * 95.98189 * 359.76019 * 21 6 4 24 24 C 1.53707 * 115.31786 * 115.20013 * 23 21 6 25 25 C 1.55472 * 101.99157 * 111.93570 * 24 23 21 26 26 C 1.55017 * 101.03389 * 33.53480 * 25 24 23 27 27 O 1.42454 * 116.59517 * 244.15001 * 23 21 6 28 28 H 1.08997 * 109.46889 * 299.99738 * 1 2 3 29 29 H 1.09000 * 109.46969 * 59.99706 * 1 2 3 30 30 H 1.09003 * 109.46789 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47046 * 240.00019 * 2 1 3 32 32 H 1.08996 * 109.46950 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46935 * 300.00306 * 3 2 1 34 34 H 1.08997 * 109.46976 * 60.00315 * 3 2 1 35 35 H 1.09003 * 109.46681 * 312.56486 * 7 6 4 36 36 H 1.09000 * 109.47011 * 192.56623 * 7 6 4 37 37 H 1.09005 * 109.46994 * 283.54808 * 9 8 7 38 38 H 1.09001 * 109.47018 * 43.54702 * 9 8 7 39 39 H 0.97002 * 120.00091 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.46872 * 162.71385 * 18 8 7 41 41 H 1.08997 * 109.47180 * 68.80440 * 19 18 8 42 42 H 1.09006 * 109.46759 * 188.80171 * 19 18 8 43 43 H 1.08994 * 109.47030 * 308.79754 * 19 18 8 44 44 H 1.08994 * 109.46899 * 48.01708 * 20 18 8 45 45 H 1.09000 * 109.46977 * 168.02272 * 20 18 8 46 46 H 1.09000 * 109.46868 * 288.01972 * 20 18 8 47 47 H 1.09001 * 110.92911 * 230.11370 * 24 23 21 48 48 H 1.09007 * 110.92812 * 353.76519 * 24 23 21 49 49 H 1.08994 * 111.10896 * 275.59642 * 25 24 23 50 50 H 1.09004 * 111.14696 * 151.48982 * 25 24 23 51 51 H 1.08998 * 110.29877 * 205.01979 * 26 25 24 52 52 H 1.09002 * 110.29814 * 82.87567 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5694 -0.3558 2.1618 6 7 2.0002 -2.1808 1.1267 7 6 0.9324 -3.1733 0.9818 8 7 0.3701 -3.0934 -0.3730 9 6 -1.0439 -3.4916 -0.3805 10 6 -1.6903 -3.0249 -1.6593 11 1 -1.0957 -2.5403 -2.4195 12 6 -3.0411 -3.2166 -1.8588 13 7 -3.7652 -3.8072 -0.9333 14 14 -3.8426 -2.6375 -3.4436 15 1 -3.2087 -3.3232 -4.5981 16 1 -5.2921 -2.9589 -3.4114 17 1 -3.6645 -1.1697 -3.5808 18 6 1.1509 -3.9056 -1.3157 19 6 2.4380 -3.1645 -1.6830 20 6 1.5015 -5.2455 -0.6655 21 6 3.3444 -2.2402 1.2073 22 8 4.1185 -3.1735 1.1836 23 6 3.5585 -0.7629 1.3361 24 6 4.1574 -0.2997 2.6737 25 6 5.5670 0.1946 2.2426 26 6 5.2655 0.7546 0.8290 27 8 4.2706 -0.1271 0.2787 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 0.1489 -2.9732 1.7126 36 1 1.3386 -4.1709 1.1484 37 1 -1.1160 -4.5771 -0.3120 38 1 -1.5532 -3.0392 0.4704 39 1 -4.7156 -3.9417 -1.0734 40 1 0.5632 -4.0818 -2.2167 41 1 3.0955 -3.1260 -0.8145 42 1 2.9401 -3.6894 -2.4958 43 1 2.1954 -2.1505 -2.0004 44 1 0.6073 -5.6755 -0.2144 45 1 1.8898 -5.9264 -1.4230 46 1 2.2574 -5.0891 0.1041 47 1 3.5728 0.5152 3.1007 48 1 4.2339 -1.1309 3.3748 49 1 6.2752 -0.6325 2.1943 50 1 5.9287 0.9795 2.9069 51 1 6.1664 0.7381 0.2156 52 1 4.8740 1.7694 0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839976708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:29 Heat of formation + Delta-G solvation = -28.117867 kcal Electronic energy + Delta-G solvation = -31157.755290 eV Core-core repulsion = 27352.255941 eV Total energy + Delta-G solvation = -3805.499349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.74094 -38.58548 -37.37885 -36.49746 -33.82326 -32.84942 -32.36940 -31.19414 -29.76292 -27.29047 -26.67127 -26.49856 -25.35570 -24.12928 -22.46283 -22.18931 -22.07129 -19.91278 -19.22653 -18.32121 -17.43141 -16.66590 -16.31875 -16.13947 -15.56784 -15.15942 -14.86759 -14.60741 -14.38534 -13.99563 -13.85872 -13.71764 -13.18862 -13.06735 -12.71012 -12.43318 -12.35867 -12.22709 -12.10021 -11.94630 -11.72794 -11.71729 -11.56168 -11.51272 -11.47092 -11.07735 -10.96671 -10.82560 -10.62635 -10.58566 -10.52994 -10.30743 -10.13359 -10.09224 -9.98714 -9.80322 -9.37132 -9.04607 -8.51694 -8.40828 -7.33193 -6.05464 -4.06270 2.46500 3.19651 3.32465 3.36673 3.40049 3.76105 3.93227 4.20616 4.36355 4.40774 4.68448 4.83447 4.91853 5.13989 5.21392 5.30523 5.30726 5.35081 5.43346 5.49438 5.50252 5.58548 5.61584 5.69002 5.75571 5.80362 5.84128 5.87920 5.97809 6.00589 6.18867 6.20331 6.31502 6.34375 6.43617 6.50041 6.50326 6.65491 6.69497 6.79811 6.84369 6.85989 6.98754 7.04899 7.21329 7.29863 7.35221 7.78328 8.03127 8.14886 8.39957 8.53622 9.00913 9.57988 11.04761 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.004318 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.150834 B = 6483.235913 C = 7230.013256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.079 4.079 3 C -0.154 4.154 4 C 0.128 3.872 5 H 0.091 0.909 6 N -0.595 5.595 7 C 0.288 3.712 8 N -0.535 5.535 9 C 0.197 3.803 10 C -0.501 4.501 11 H 0.063 0.937 12 C 0.058 3.942 13 N -0.899 5.899 14 Si 0.896 3.104 15 H -0.278 1.278 16 H -0.289 1.289 17 H -0.276 1.276 18 C 0.084 3.916 19 C -0.142 4.142 20 C -0.182 4.182 21 C 0.517 3.483 22 O -0.519 6.519 23 C 0.060 3.940 24 C -0.124 4.124 25 C -0.153 4.153 26 C 0.044 3.956 27 O -0.326 6.326 28 H 0.034 0.966 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.072 0.928 37 H -0.005 1.005 38 H 0.032 0.968 39 H 0.261 0.739 40 H 0.090 0.910 41 H 0.054 0.946 42 H 0.041 0.959 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.091 0.909 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.161 9.544 7.440 19.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.098 4.098 3 C -0.211 4.211 4 C 0.024 3.976 5 H 0.108 0.892 6 N -0.332 5.332 7 C 0.079 3.921 8 N -0.261 5.261 9 C 0.073 3.927 10 C -0.540 4.540 11 H 0.081 0.919 12 C -0.144 4.144 13 N -0.539 5.539 14 Si 0.724 3.276 15 H -0.204 1.204 16 H -0.215 1.215 17 H -0.202 1.202 18 C -0.025 4.025 19 C -0.200 4.200 20 C -0.240 4.240 21 C 0.301 3.699 22 O -0.394 6.394 23 C 0.015 3.985 24 C -0.162 4.162 25 C -0.191 4.191 26 C -0.032 4.032 27 O -0.244 6.244 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.013 0.987 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.073 0.927 47 H 0.109 0.891 48 H 0.106 0.894 49 H 0.101 0.899 50 H 0.105 0.895 51 H 0.107 0.893 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.159 9.241 7.064 19.108 hybrid contribution -0.762 -0.491 -0.458 1.015 sum 14.398 8.750 6.606 18.097 Atomic orbital electron populations 1.21982 0.93654 1.05567 0.99863 1.21062 0.96945 0.94957 0.96845 1.22029 1.02291 0.95886 1.00905 1.22565 0.92886 0.82010 1.00128 0.89151 1.50190 1.06211 1.07298 1.69483 1.21988 0.87862 0.89249 0.93049 1.61959 1.05093 1.54721 1.04284 1.19742 0.80222 0.94361 0.98412 1.21048 0.92914 1.37895 1.02094 0.91882 1.24942 0.97295 0.95401 0.96733 1.69938 1.07019 1.43136 1.33760 0.86596 0.78045 0.79283 0.83705 1.20354 1.21483 1.20199 1.21593 0.94295 0.89708 0.96857 1.21982 0.96873 1.00469 1.00644 1.22455 1.01216 0.99188 1.01190 1.22091 0.82564 0.89876 0.75374 1.90658 1.53993 1.43790 1.50929 1.23003 0.93529 0.92728 0.89203 1.22732 0.96084 1.02223 0.95160 1.23297 0.97199 1.01760 0.96820 1.23565 0.91744 0.93758 0.94149 1.88435 1.49253 1.58384 1.28283 0.94736 0.93324 0.88109 0.89816 0.91136 0.93005 0.93777 0.90038 0.91038 0.98707 0.95013 0.92900 0.89178 0.92704 0.93988 0.92323 0.92469 0.92910 0.92739 0.89050 0.89383 0.89910 0.89498 0.89262 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.19 37.16 0.34 -2.22 16 2 C -0.08 -1.16 2.47 -90.62 -0.22 -1.38 16 3 C -0.15 -1.86 8.91 37.16 0.33 -1.53 16 4 C 0.13 1.76 3.38 -80.14 -0.27 1.49 16 5 H 0.09 1.09 8.02 -51.93 -0.42 0.67 16 6 N -0.60 -9.55 2.71 -195.35 -0.53 -10.08 16 7 C 0.29 5.06 6.00 -63.32 -0.38 4.68 16 8 N -0.53 -10.58 2.76 -231.97 -0.64 -11.21 16 9 C 0.20 4.69 3.85 -4.98 -0.02 4.67 16 10 C -0.50 -13.16 8.40 -34.44 -0.29 -13.45 16 11 H 0.06 1.68 7.63 -52.48 -0.40 1.27 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 13 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 14 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 C 0.08 1.63 2.74 -67.71 -0.19 1.44 16 19 C -0.14 -2.60 8.89 37.16 0.33 -2.27 16 20 C -0.18 -3.26 7.89 37.16 0.29 -2.96 16 21 C 0.52 8.54 6.65 -23.19 -0.15 8.38 16 22 O -0.52 -10.17 17.14 5.56 0.10 -10.07 16 23 C 0.06 0.77 1.55 -92.26 -0.14 0.63 16 24 C -0.12 -1.15 6.33 -25.05 -0.16 -1.31 16 25 C -0.15 -1.20 7.16 -24.35 -0.17 -1.37 16 26 C 0.04 0.39 7.23 38.22 0.28 0.66 16 27 O -0.33 -4.23 8.36 -35.23 -0.29 -4.53 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.10 1.99 4.90 -51.93 -0.25 1.74 16 31 H 0.08 1.46 6.64 -51.93 -0.34 1.12 16 32 H 0.07 0.80 4.03 -51.93 -0.21 0.59 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.08 1.39 7.46 -51.93 -0.39 1.00 16 36 H 0.07 1.28 4.99 -51.93 -0.26 1.02 16 37 H 0.00 -0.12 6.88 -51.93 -0.36 -0.48 16 38 H 0.03 0.80 7.60 -51.93 -0.39 0.41 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 1.93 7.02 -51.93 -0.36 1.57 16 41 H 0.05 1.04 4.17 -51.93 -0.22 0.82 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.06 1.11 6.64 -51.93 -0.34 0.76 16 44 H 0.06 1.06 6.91 -51.93 -0.36 0.70 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.05 0.98 6.51 -51.93 -0.34 0.65 16 47 H 0.09 0.67 8.12 -51.93 -0.42 0.25 16 48 H 0.09 0.84 7.94 -51.92 -0.41 0.43 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.07 0.49 7.33 -51.93 -0.38 0.11 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -29.76 385.61 -9.17 -38.92 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -8.80 Total: 2.91 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -0.52 Total: -3.06 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.43 Total: -46.15 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.20 Total: -14.60 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.76 -9.17 -38.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839976708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.807 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds