Wall clock time and date at job start Tue Mar 31 2020 15:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47218 * 2 1 4 4 C 1.53001 * 109.47350 * 120.00356 * 2 1 3 5 5 H 1.08999 * 112.43012 * 309.89981 * 4 2 1 6 6 N 1.46516 * 113.09643 * 79.50341 * 4 2 1 7 7 C 1.46498 * 134.66315 * 295.35056 * 6 4 2 8 8 N 1.46896 * 109.47441 * 72.56050 * 7 6 4 9 9 C 1.46900 * 111.00256 * 209.47649 * 8 7 6 10 10 C 1.50696 * 109.47257 * 163.55246 * 9 8 7 11 11 H 1.08003 * 120.00336 * 3.76618 * 10 9 8 12 12 C 1.37877 * 120.00236 * 183.76930 * 10 9 8 13 13 N 1.31523 * 119.99791 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00308 * 179.97438 * 12 10 9 15 15 H 1.48491 * 109.46902 * 60.00386 * 14 12 10 16 16 H 1.48504 * 109.47169 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47264 * 299.99996 * 14 12 10 18 18 C 1.46900 * 110.99991 * 85.51694 * 8 7 6 19 19 C 1.52998 * 109.47114 * 282.71650 * 18 8 7 20 20 C 1.53006 * 109.46880 * 42.71797 * 18 8 7 21 21 C 1.34797 * 90.67181 * 115.60196 * 6 4 2 22 22 O 1.21281 * 132.00538 * 179.76008 * 21 6 4 23 23 C 1.49824 * 95.98189 * 359.76019 * 21 6 4 24 24 C 1.53707 * 115.31786 * 115.20013 * 23 21 6 25 25 C 1.55472 * 101.99157 * 111.93570 * 24 23 21 26 26 C 1.55017 * 101.03389 * 33.53480 * 25 24 23 27 27 O 1.42454 * 116.59517 * 244.15001 * 23 21 6 28 28 H 1.08997 * 109.46889 * 299.99738 * 1 2 3 29 29 H 1.09000 * 109.46969 * 59.99706 * 1 2 3 30 30 H 1.09003 * 109.46789 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47046 * 240.00019 * 2 1 3 32 32 H 1.08996 * 109.46950 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46935 * 300.00306 * 3 2 1 34 34 H 1.08997 * 109.46976 * 60.00315 * 3 2 1 35 35 H 1.09003 * 109.46681 * 312.56486 * 7 6 4 36 36 H 1.09000 * 109.47011 * 192.56623 * 7 6 4 37 37 H 1.09005 * 109.46994 * 283.54808 * 9 8 7 38 38 H 1.09001 * 109.47018 * 43.54702 * 9 8 7 39 39 H 0.97002 * 120.00091 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.46872 * 162.71385 * 18 8 7 41 41 H 1.08997 * 109.47180 * 68.80440 * 19 18 8 42 42 H 1.09006 * 109.46759 * 188.80171 * 19 18 8 43 43 H 1.08994 * 109.47030 * 308.79754 * 19 18 8 44 44 H 1.08994 * 109.46899 * 48.01708 * 20 18 8 45 45 H 1.09000 * 109.46977 * 168.02272 * 20 18 8 46 46 H 1.09000 * 109.46868 * 288.01972 * 20 18 8 47 47 H 1.09001 * 110.92911 * 230.11370 * 24 23 21 48 48 H 1.09007 * 110.92812 * 353.76519 * 24 23 21 49 49 H 1.08994 * 111.10896 * 275.59642 * 25 24 23 50 50 H 1.09004 * 111.14696 * 151.48982 * 25 24 23 51 51 H 1.08998 * 110.29877 * 205.01979 * 26 25 24 52 52 H 1.09002 * 110.29814 * 82.87567 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.5694 -0.3558 2.1618 6 7 2.0002 -2.1808 1.1267 7 6 0.9324 -3.1733 0.9818 8 7 0.3701 -3.0934 -0.3730 9 6 -1.0439 -3.4916 -0.3805 10 6 -1.6903 -3.0249 -1.6593 11 1 -1.0957 -2.5403 -2.4195 12 6 -3.0411 -3.2166 -1.8588 13 7 -3.7652 -3.8072 -0.9333 14 14 -3.8426 -2.6375 -3.4436 15 1 -3.2087 -3.3232 -4.5981 16 1 -5.2921 -2.9589 -3.4114 17 1 -3.6645 -1.1697 -3.5808 18 6 1.1509 -3.9056 -1.3157 19 6 2.4380 -3.1645 -1.6830 20 6 1.5015 -5.2455 -0.6655 21 6 3.3444 -2.2402 1.2073 22 8 4.1185 -3.1735 1.1836 23 6 3.5585 -0.7629 1.3361 24 6 4.1574 -0.2997 2.6737 25 6 5.5670 0.1946 2.2426 26 6 5.2655 0.7546 0.8290 27 8 4.2706 -0.1271 0.2787 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 0.1489 -2.9732 1.7126 36 1 1.3386 -4.1709 1.1484 37 1 -1.1160 -4.5771 -0.3120 38 1 -1.5532 -3.0392 0.4704 39 1 -4.7156 -3.9417 -1.0734 40 1 0.5632 -4.0818 -2.2167 41 1 3.0955 -3.1260 -0.8145 42 1 2.9401 -3.6894 -2.4958 43 1 2.1954 -2.1505 -2.0004 44 1 0.6073 -5.6755 -0.2144 45 1 1.8898 -5.9264 -1.4230 46 1 2.2574 -5.0891 0.1041 47 1 3.5728 0.5152 3.1007 48 1 4.2339 -1.1309 3.3748 49 1 6.2752 -0.6325 2.1943 50 1 5.9287 0.9795 2.9069 51 1 6.1664 0.7381 0.2156 52 1 4.8740 1.7694 0.8999 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839976708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:28 Heat of formation + Delta-G solvation = -45.047580 kcal Electronic energy + Delta-G solvation = -31158.489418 eV Core-core repulsion = 27352.255941 eV Total energy + Delta-G solvation = -3806.233476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.86256 -39.78532 -38.81932 -37.76361 -35.09221 -34.82281 -33.17604 -32.76117 -31.11181 -28.77981 -28.17036 -27.69048 -26.76839 -25.41749 -23.97548 -23.50650 -23.03951 -21.09289 -20.66208 -19.51010 -18.57473 -18.34199 -17.73305 -17.32299 -17.14031 -16.40609 -16.31611 -15.95551 -15.73029 -15.34093 -14.95612 -14.83860 -14.74379 -14.53905 -14.08346 -13.91848 -13.63164 -13.59085 -13.32956 -13.27408 -12.92565 -12.83731 -12.79231 -12.76062 -12.58954 -12.56962 -12.48068 -12.32527 -12.16273 -12.11962 -11.81330 -11.61453 -11.59978 -11.43202 -11.37770 -11.30048 -11.13863 -10.56414 -10.18886 -9.80213 -9.01218 -8.15443 -6.22716 1.23522 1.42602 1.43456 1.51248 1.95079 2.42707 2.81924 2.85606 3.15289 3.25319 3.37645 3.52792 3.95104 4.01973 4.06019 4.09056 4.16852 4.23516 4.29062 4.35512 4.42195 4.43184 4.57250 4.65852 4.68837 4.75090 4.76668 4.80398 4.88389 4.90040 4.93403 4.94986 4.98296 5.04551 5.12213 5.16266 5.22229 5.23746 5.32104 5.35593 5.40610 5.51765 5.53731 5.66193 5.72330 5.78766 5.93001 5.97419 6.11145 6.38735 6.59053 6.90572 7.17411 7.45595 8.94077 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017353 B = 0.004318 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.150834 B = 6483.235913 C = 7230.013256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.146 4.146 4 C 0.127 3.873 5 H 0.116 0.884 6 N -0.600 5.600 7 C 0.291 3.709 8 N -0.530 5.530 9 C 0.218 3.782 10 C -0.506 4.506 11 H 0.056 0.944 12 C 0.010 3.990 13 N -0.931 5.931 14 Si 0.956 3.044 15 H -0.274 1.274 16 H -0.285 1.285 17 H -0.271 1.271 18 C 0.083 3.917 19 C -0.127 4.127 20 C -0.169 4.169 21 C 0.504 3.496 22 O -0.558 6.558 23 C 0.077 3.923 24 C -0.122 4.122 25 C -0.145 4.145 26 C 0.035 3.965 27 O -0.351 6.351 28 H 0.051 0.949 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.081 0.919 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.067 0.933 37 H -0.029 1.029 38 H 0.014 0.986 39 H 0.262 0.738 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.046 0.954 45 H 0.067 0.933 46 H 0.053 0.947 47 H 0.122 0.878 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.121 0.879 51 H 0.097 0.903 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.557 11.980 8.093 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.203 4.203 4 C 0.024 3.976 5 H 0.134 0.866 6 N -0.336 5.336 7 C 0.081 3.919 8 N -0.255 5.255 9 C 0.092 3.908 10 C -0.544 4.544 11 H 0.074 0.926 12 C -0.188 4.188 13 N -0.572 5.572 14 Si 0.782 3.218 15 H -0.199 1.199 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.025 4.025 19 C -0.185 4.185 20 C -0.228 4.228 21 C 0.290 3.710 22 O -0.435 6.435 23 C 0.032 3.968 24 C -0.160 4.160 25 C -0.183 4.183 26 C -0.041 4.041 27 O -0.269 6.269 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.085 0.915 37 H -0.012 1.012 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.140 0.860 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.139 0.861 51 H 0.115 0.885 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 16.580 11.711 7.718 21.717 hybrid contribution -1.136 -1.251 -0.669 1.818 sum 15.444 10.460 7.048 19.940 Atomic orbital electron populations 1.21890 0.95298 1.03377 1.00071 1.20930 0.95308 0.96767 0.96048 1.21962 1.02914 0.93670 1.01755 1.22773 0.94122 0.80179 1.00570 0.86617 1.50241 1.05949 1.08336 1.69089 1.21854 0.88426 0.89912 0.91727 1.61893 1.03293 1.54590 1.05745 1.19327 0.82401 0.92363 0.96722 1.21263 0.93170 1.37321 1.02675 0.92610 1.25683 0.97914 0.95565 0.99658 1.70047 1.07234 1.44363 1.35518 0.85636 0.77118 0.78959 0.80093 1.19912 1.21095 1.19608 1.21565 0.94315 0.90679 0.95987 1.21824 0.95984 0.99912 1.00737 1.22314 1.00618 0.98541 1.01318 1.23006 0.82167 0.91494 0.74303 1.90621 1.54839 1.45517 1.52533 1.22902 0.92971 0.89552 0.91333 1.22863 0.97152 1.03074 0.92916 1.23303 0.95994 1.02229 0.96755 1.23884 0.91317 0.94089 0.94762 1.88424 1.50213 1.59011 1.29221 0.92954 0.94612 0.91445 0.93026 0.90041 0.93457 0.91636 0.89773 0.91497 1.01153 0.96833 0.92879 0.91494 0.93260 0.92631 0.93189 0.93535 0.91415 0.92850 0.85983 0.89732 0.91250 0.86121 0.88468 0.88964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.19 71.98 0.66 -4.27 16 2 C -0.07 -2.02 2.47 -10.79 -0.03 -2.05 16 3 C -0.15 -3.12 8.91 71.98 0.64 -2.48 16 4 C 0.13 3.28 3.38 37.07 0.13 3.40 16 5 H 0.12 2.43 8.02 -2.39 -0.02 2.41 16 6 N -0.60 -19.23 2.71 -890.35 -2.41 -21.64 16 7 C 0.29 10.52 6.00 170.81 1.02 11.54 16 8 N -0.53 -21.77 2.76 -887.80 -2.45 -24.22 16 9 C 0.22 10.82 3.85 85.56 0.33 11.15 16 10 C -0.51 -27.37 8.40 25.60 0.22 -27.15 16 11 H 0.06 3.05 7.63 -2.91 -0.02 3.03 16 12 C 0.01 0.55 5.46 84.65 0.46 1.01 16 13 N -0.93 -54.11 13.29 21.45 0.28 -53.82 16 14 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 15 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 16 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 C 0.08 3.32 2.74 44.92 0.12 3.45 16 19 C -0.13 -4.71 8.89 71.98 0.64 -4.07 16 20 C -0.17 -6.21 7.89 71.98 0.57 -5.64 16 21 C 0.50 16.48 6.65 79.74 0.53 17.01 16 22 O -0.56 -22.05 17.14 -3.03 -0.05 -22.10 16 23 C 0.08 1.83 1.55 -11.86 -0.02 1.82 16 24 C -0.12 -1.85 6.33 31.68 0.20 -1.65 16 25 C -0.15 -1.74 7.16 32.14 0.23 -1.51 16 26 C 0.03 0.49 7.23 72.67 0.53 1.02 16 27 O -0.35 -8.36 8.36 -148.98 -1.25 -9.61 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 2.71 4.90 -2.39 -0.01 2.70 16 31 H 0.05 1.81 6.64 -2.38 -0.02 1.79 16 32 H 0.08 1.59 4.03 -2.39 -0.01 1.58 16 33 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 2.97 7.46 -2.39 -0.02 2.95 16 36 H 0.07 2.48 4.99 -2.39 -0.01 2.47 16 37 H -0.03 -1.58 6.88 -2.38 -0.02 -1.59 16 38 H 0.01 0.72 7.60 -2.39 -0.02 0.70 16 39 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 40 H 0.07 2.98 7.02 -2.39 -0.02 2.97 16 41 H 0.05 1.90 4.17 -2.39 -0.01 1.89 16 42 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 43 H 0.05 1.93 6.64 -2.39 -0.02 1.91 16 44 H 0.05 1.78 6.91 -2.39 -0.02 1.77 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.05 1.97 6.51 -2.39 -0.02 1.95 16 47 H 0.12 1.15 8.12 -2.39 -0.02 1.13 16 48 H 0.08 1.38 7.94 -2.38 -0.02 1.37 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.09 0.89 7.33 -2.39 -0.02 0.88 16 Total: -1.00 -66.89 385.61 3.29 -63.60 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.90 Total: 20.31 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 6.23 Total: 1.58 kcal Atomic # 7 Polarization: -95.10 SS G_CDS: -4.58 Total: -99.68 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.30 Total: -31.70 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.89 3.29 -63.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839976708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.552 kcal (2) G-P(sol) polarization free energy of solvation -66.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds