Wall clock time and date at job start Tue Mar 31 2020 14:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46938 * 2 1 4 4 O 1.42898 * 109.47068 * 240.00079 * 2 1 3 5 5 C 1.52999 * 109.47472 * 119.99887 * 2 1 3 6 6 C 1.50703 * 109.47184 * 59.99973 * 5 2 1 7 7 O 1.21283 * 119.99673 * 0.02562 * 6 5 2 8 8 N 1.34767 * 120.00329 * 180.02562 * 6 5 2 9 9 C 1.46934 * 120.63050 * 1.99786 * 8 6 5 10 10 C 1.53191 * 108.77705 * 126.39188 * 9 8 6 11 11 C 1.53045 * 109.30924 * 54.63357 * 10 9 8 12 12 C 1.53034 * 109.54149 * 298.63593 * 11 10 9 13 13 C 1.46921 * 120.63137 * 181.99977 * 8 6 5 14 14 H 1.09004 * 109.70726 * 113.75340 * 13 8 6 15 15 C 1.52996 * 109.58819 * 353.39526 * 13 8 6 16 16 H 1.09000 * 110.91348 * 55.34682 * 15 13 8 17 17 C 1.55157 * 111.00289 * 291.44390 * 15 13 8 18 18 C 1.54324 * 102.94093 * 206.42422 * 17 15 13 19 19 N 1.47019 * 107.27300 * 22.19237 * 18 17 15 20 20 C 1.36941 * 125.64860 * 181.04183 * 19 18 17 21 21 H 1.08000 * 120.00011 * 180.02562 * 20 19 18 22 22 C 1.38805 * 119.99926 * 0.02562 * 20 19 18 23 23 N 1.31614 * 120.00327 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99772 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47241 * 90.00312 * 24 22 20 26 26 H 1.48509 * 109.47058 * 210.00044 * 24 22 20 27 27 H 1.48493 * 109.47147 * 329.99895 * 24 22 20 28 28 C 1.47421 * 108.70466 * 1.05919 * 19 18 17 29 29 H 1.08999 * 109.47065 * 299.99839 * 1 2 3 30 30 H 1.08999 * 109.47188 * 59.99870 * 1 2 3 31 31 H 1.08996 * 109.46911 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46602 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46818 * 300.00226 * 3 2 1 34 34 H 1.08999 * 109.47111 * 60.00189 * 3 2 1 35 35 H 0.96700 * 113.99888 * 179.97438 * 4 2 1 36 36 H 1.09005 * 109.46827 * 300.00393 * 5 2 1 37 37 H 1.08996 * 109.47654 * 180.02562 * 5 2 1 38 38 H 1.08996 * 109.58208 * 6.60584 * 9 8 6 39 39 H 1.09000 * 109.70659 * 246.25104 * 9 8 6 40 40 H 1.09008 * 109.49957 * 294.69043 * 10 9 8 41 41 H 1.08991 * 109.49805 * 174.58927 * 10 9 8 42 42 H 1.09007 * 109.45566 * 178.61751 * 11 10 9 43 43 H 1.08997 * 109.45799 * 58.65979 * 11 10 9 44 44 H 1.09009 * 109.49887 * 301.41494 * 12 11 10 45 45 H 1.09002 * 109.52803 * 181.33338 * 12 11 10 46 46 H 1.08996 * 110.72345 * 88.06296 * 17 15 13 47 47 H 1.08997 * 110.72266 * 324.78422 * 17 15 13 48 48 H 1.09003 * 109.88576 * 141.61105 * 18 17 15 49 49 H 1.09005 * 109.88060 * 262.77364 * 18 17 15 50 50 H 0.97001 * 120.00475 * 179.97438 * 23 22 20 51 51 H 1.09001 * 110.37313 * 217.03226 * 28 19 18 52 52 H 1.09000 * 110.46137 * 94.75443 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0401 -0.7212 1.2492 6 6 1.5378 -2.1421 1.2493 7 8 0.8408 -2.5389 0.3395 8 7 1.8630 -2.9717 2.2603 9 6 2.6700 -2.4934 3.3912 10 6 1.9280 -2.8074 4.6941 11 6 1.6009 -4.3017 4.7428 12 6 0.6894 -4.6647 3.5683 13 6 1.4173 -4.3717 2.2526 14 1 2.2798 -5.0315 2.1575 15 6 0.4647 -4.6003 1.0774 16 1 0.9305 -4.3079 0.1364 17 6 -0.8747 -3.8472 1.2927 18 6 -1.8774 -4.6833 0.4699 19 7 -1.3037 -6.0285 0.3189 20 6 -1.8751 -7.0677 -0.3659 21 1 -1.3716 -8.0217 -0.4183 22 6 -3.1016 -6.8949 -0.9925 23 7 -3.7150 -5.7322 -0.9291 24 14 -3.8814 -8.3126 -1.9260 25 1 -4.7426 -9.0974 -1.0053 26 1 -4.7056 -7.7782 -3.0398 27 1 -2.8160 -9.1893 -2.4751 28 6 -0.0115 -6.0736 1.0271 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8900 35 1 2.9703 -0.7114 -1.2331 36 1 1.6767 -0.2073 2.1392 37 1 3.1300 -0.7208 1.2495 38 1 2.8177 -1.4170 3.3051 39 1 3.6371 -2.9962 3.3912 40 1 1.0035 -2.2312 4.7343 41 1 2.5581 -2.5450 5.5438 42 1 1.0946 -4.5322 5.6802 43 1 2.5240 -4.8777 4.6777 44 1 -0.2234 -4.0709 3.6191 45 1 0.4374 -5.7241 3.6166 46 1 -0.8118 -2.8302 0.9058 47 1 -1.1498 -3.8434 2.3473 48 1 -2.8299 -4.7436 0.9964 49 1 -2.0216 -4.2296 -0.5107 50 1 -4.5719 -5.6113 -1.3673 51 1 0.7027 -6.6845 0.4749 52 1 -0.1434 -6.4643 2.0361 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039223473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:08 Heat of formation + Delta-G solvation = -30.945748 kcal Electronic energy + Delta-G solvation = -30689.553068 eV Core-core repulsion = 26883.931093 eV Total energy + Delta-G solvation = -3805.621975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.83061 -38.51723 -36.79201 -36.70327 -33.29601 -32.69652 -32.48256 -30.91027 -28.79490 -28.35502 -27.30105 -27.23670 -24.80490 -24.22099 -23.00805 -21.19232 -20.51710 -19.97577 -19.55680 -18.36653 -16.91868 -16.77678 -16.16783 -15.70497 -15.29045 -14.97691 -14.80490 -14.66734 -14.43535 -14.32663 -13.83183 -13.65028 -13.31237 -13.21491 -12.81890 -12.58595 -12.26810 -12.18082 -12.13293 -12.02702 -11.88953 -11.62567 -11.51669 -11.36965 -11.20349 -10.88622 -10.86046 -10.72072 -10.67265 -10.50514 -10.41038 -10.00811 -9.90111 -9.83524 -9.53406 -9.46232 -9.36427 -8.57837 -8.29099 -8.09229 -6.57579 -5.51200 -2.83496 2.89199 3.09753 3.50678 3.54957 3.57601 4.21765 4.51138 4.55646 4.66091 4.68628 4.78997 4.86865 4.90053 5.05460 5.14669 5.22813 5.28738 5.30596 5.35322 5.46748 5.49824 5.57016 5.67486 5.69323 5.78685 5.83763 5.84333 5.89384 5.94134 6.01081 6.06256 6.10138 6.13392 6.21723 6.27838 6.33543 6.53056 6.64799 6.69942 6.77611 6.91539 7.08058 7.20698 7.44565 7.66939 7.76699 7.77569 7.97340 8.10126 8.48471 8.59261 9.43122 10.04428 10.73143 11.59948 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012768 B = 0.004340 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.417203 B = 6450.194333 C = 8083.456555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 C -0.178 4.178 4 O -0.538 6.538 5 C -0.169 4.169 6 C 0.496 3.504 7 O -0.472 6.472 8 N -0.611 5.611 9 C 0.110 3.890 10 C -0.135 4.135 11 C -0.119 4.119 12 C -0.140 4.140 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.092 4.092 16 H 0.107 0.893 17 C -0.137 4.137 18 C 0.183 3.817 19 N -0.603 5.603 20 C -0.224 4.224 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.908 3.092 25 H -0.291 1.291 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.133 3.867 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.098 0.902 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.364 0.636 36 H 0.093 0.907 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.079 0.921 46 H 0.082 0.918 47 H 0.043 0.957 48 H 0.031 0.969 49 H 0.042 0.958 50 H 0.249 0.751 51 H 0.029 0.971 52 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.928 14.204 11.762 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.104 3.896 3 C -0.235 4.235 4 O -0.342 6.342 5 C -0.209 4.209 6 C 0.284 3.716 7 O -0.346 6.346 8 N -0.347 5.347 9 C -0.014 4.014 10 C -0.173 4.173 11 C -0.157 4.157 12 C -0.177 4.177 13 C 0.059 3.941 14 H 0.082 0.918 15 C -0.112 4.112 16 H 0.125 0.875 17 C -0.174 4.174 18 C 0.058 3.942 19 N -0.329 5.329 20 C -0.352 4.352 21 H 0.092 0.908 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C 0.006 3.994 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.210 0.790 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.100 0.900 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.047 0.953 52 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 15.691 13.893 11.001 23.670 hybrid contribution 0.265 -0.616 -0.050 0.672 sum 15.956 13.277 10.950 23.469 Atomic orbital electron populations 1.22035 0.92042 1.05879 1.01237 1.20896 0.95812 0.89214 0.83664 1.22527 1.01007 0.97089 1.02923 1.86786 1.25270 1.79303 1.42866 1.22528 1.02074 0.95112 1.01185 1.20317 0.81457 0.87025 0.82838 1.90796 1.33798 1.74736 1.35274 1.48100 1.53908 1.11365 1.21310 1.21644 0.94022 0.99613 0.86098 1.21912 1.00933 0.97571 0.96863 1.21526 0.99920 0.95389 0.98819 1.22185 0.99203 1.02815 0.93534 1.21167 0.96556 0.80380 0.96000 0.91795 1.22834 0.95154 0.95769 0.97417 0.87491 1.23382 0.95143 1.00394 0.98505 1.21064 0.92529 0.83383 0.97201 1.44445 1.18239 1.09813 1.60400 1.19062 1.00930 0.90594 1.24661 0.90770 1.24773 0.97694 0.97010 1.01145 1.70009 1.16648 1.21917 1.48274 0.86169 0.79129 0.81424 0.79367 1.21825 1.21785 1.20820 1.21716 0.88801 0.94095 0.94753 0.92322 0.92352 0.88306 0.92623 0.91517 0.91741 0.79006 0.88860 0.89512 0.90293 0.91807 0.91513 0.91223 0.91967 0.92138 0.90476 0.90295 0.90033 0.93887 0.95070 0.93983 0.94027 0.95259 0.96938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 8.52 37.16 0.32 -1.75 16 2 C 0.15 1.60 0.98 -90.62 -0.09 1.51 16 3 C -0.18 -1.43 8.82 37.16 0.33 -1.10 16 4 O -0.54 -7.14 11.88 -53.50 -0.64 -7.77 16 5 C -0.17 -1.60 3.31 -27.88 -0.09 -1.70 16 6 C 0.50 6.73 6.75 -10.99 -0.07 6.65 16 7 O -0.47 -8.49 6.29 -12.71 -0.08 -8.57 16 8 N -0.61 -7.49 2.96 -165.22 -0.49 -7.98 16 9 C 0.11 0.91 6.34 -3.71 -0.02 0.89 16 10 C -0.13 -1.10 6.08 -26.61 -0.16 -1.27 16 11 C -0.12 -1.17 5.88 -26.69 -0.16 -1.33 16 12 C -0.14 -1.87 4.72 -26.61 -0.13 -2.00 16 13 C 0.16 2.36 2.80 -67.60 -0.19 2.18 16 14 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.09 -1.80 2.12 -88.47 -0.19 -1.99 16 16 H 0.11 2.37 5.99 -52.02 -0.31 2.06 16 17 C -0.14 -2.90 5.32 -24.90 -0.13 -3.03 16 18 C 0.18 4.95 5.37 -3.07 -0.02 4.93 16 19 N -0.60 -16.82 3.39 -170.07 -0.58 -17.40 16 20 C -0.22 -6.72 10.28 -15.06 -0.15 -6.88 16 21 H 0.07 2.14 7.83 -52.49 -0.41 1.73 16 22 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 23 N -0.92 -29.04 10.31 55.49 0.57 -28.47 16 24 Si 0.91 23.44 29.55 -169.99 -5.02 18.41 16 25 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 27 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 28 C 0.13 3.00 6.61 -2.53 -0.02 2.98 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.69 4.79 -51.93 -0.25 1.44 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.36 3.32 9.05 45.56 0.41 3.73 16 36 H 0.09 0.73 7.61 -51.93 -0.39 0.33 16 37 H 0.09 0.63 8.02 -51.93 -0.42 0.21 16 38 H 0.08 0.50 5.94 -51.93 -0.31 0.19 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.61 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.58 8.14 -51.92 -0.42 0.15 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.08 1.17 5.67 -51.92 -0.29 0.87 16 45 H 0.08 1.14 6.49 -51.93 -0.34 0.80 16 46 H 0.08 1.74 4.70 -52.19 -0.25 1.49 16 47 H 0.04 0.86 5.39 -51.93 -0.28 0.58 16 48 H 0.03 0.92 7.51 -51.93 -0.39 0.53 16 49 H 0.04 1.29 7.38 -51.93 -0.38 0.90 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.28 16 51 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 52 H 0.01 0.28 6.08 -51.93 -0.32 -0.03 16 LS Contribution 373.55 15.07 5.63 5.63 Total: -1.00 -35.62 373.55 -9.61 -45.23 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.13 Total: 3.20 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -0.87 Total: -2.28 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.49 Total: -53.84 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.72 Total: -16.34 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -5.02 Total: 18.41 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.62 -9.61 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039223473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.280 kcal (2) G-P(sol) polarization free energy of solvation -35.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds