Wall clock time and date at job start Tue Mar 31 2020 14:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46656 * 2 1 4 4 C 1.52996 * 109.46967 * 240.00183 * 2 1 3 5 5 O 1.45202 * 109.47027 * 119.99798 * 2 1 3 6 6 C 1.34638 * 116.99518 * 59.99981 * 5 2 1 7 7 O 1.21511 * 120.00361 * 0.02562 * 6 5 2 8 8 N 1.34783 * 119.99774 * 179.97438 * 6 5 2 9 9 C 1.47152 * 125.59583 * 0.03022 * 8 6 5 10 10 C 1.54629 * 107.34012 * 179.08449 * 9 8 6 11 11 C 1.53474 * 102.74568 * 339.33001 * 10 9 8 12 12 C 1.53500 * 111.80239 * 272.87745 * 11 10 9 13 13 C 1.55215 * 101.46304 * 204.14294 * 12 11 10 14 14 N 1.47996 * 104.99190 * 35.39327 * 13 12 11 15 15 C 1.46891 * 110.99798 * 213.96162 * 14 13 12 16 16 C 1.52998 * 109.47457 * 290.77645 * 15 14 13 17 17 C 1.50707 * 109.47145 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99796 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00031 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99890 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99984 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47144 * 60.00088 * 21 19 17 23 23 H 1.48505 * 109.46893 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.46869 * 299.99473 * 21 19 17 25 25 C 1.47866 * 108.51237 * 336.19823 * 14 13 12 26 26 C 1.47745 * 125.60305 * 180.02562 * 8 6 5 27 27 H 1.08997 * 109.47004 * 299.99900 * 1 2 3 28 28 H 1.09004 * 109.46729 * 60.00350 * 1 2 3 29 29 H 1.08997 * 109.47030 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46527 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47611 * 299.99524 * 3 2 1 32 32 H 1.08997 * 109.47333 * 60.00301 * 3 2 1 33 33 H 1.09000 * 109.47174 * 299.99300 * 4 2 1 34 34 H 1.08996 * 109.47296 * 59.99850 * 4 2 1 35 35 H 1.09008 * 109.46851 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.87397 * 59.64193 * 9 8 6 37 37 H 1.09007 * 109.99062 * 298.58466 * 9 8 6 38 38 H 1.09006 * 110.75324 * 221.01863 * 10 9 8 39 39 H 1.08999 * 110.91734 * 97.71519 * 10 9 8 40 40 H 1.08994 * 111.02645 * 322.19048 * 12 11 10 41 41 H 1.09000 * 111.02172 * 86.09887 * 12 11 10 42 42 H 1.08994 * 110.33547 * 276.50998 * 13 12 11 43 43 H 1.09006 * 110.33162 * 154.27312 * 13 12 11 44 44 H 1.09004 * 109.47186 * 50.77892 * 15 14 13 45 45 H 1.08999 * 109.47151 * 170.77525 * 15 14 13 46 46 H 1.08996 * 109.47218 * 299.99999 * 16 15 14 47 47 H 1.08999 * 109.46986 * 60.00364 * 16 15 14 48 48 H 0.97006 * 120.00032 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.99816 * 121.47924 * 25 14 13 50 50 H 1.09003 * 109.99545 * 242.82327 * 25 14 13 51 51 H 1.09001 * 110.39241 * 83.55458 * 26 8 6 52 52 H 1.09004 * 110.39766 * 321.15492 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0141 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0680 -2.6657 2.4167 9 6 2.9161 -2.1401 3.4983 10 6 3.1135 -3.2798 4.5244 11 6 1.9358 -4.2160 4.2213 12 6 0.6733 -3.8132 4.9959 13 6 -0.0995 -5.1584 5.0473 14 7 0.9471 -6.1963 5.1803 15 6 0.5611 -7.4263 4.4763 16 6 -0.6064 -8.0891 5.2101 17 6 -1.0020 -9.3514 4.4880 18 1 -0.4737 -9.6507 3.5948 19 6 -2.0389 -10.1235 4.9671 20 7 -2.6824 -9.7587 6.0545 21 14 -2.5287 -11.6885 4.0725 22 1 -1.3735 -12.6209 4.0376 23 1 -3.6620 -12.3317 4.7847 24 1 -2.9398 -11.3572 2.6845 25 6 2.2153 -5.6554 4.6459 26 6 1.7471 -4.0784 2.7071 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6768 -1.7489 -1.2492 34 1 1.6767 -0.2074 -2.1392 35 1 3.1301 -0.7216 -1.2490 36 1 2.4246 -1.2925 3.9758 37 1 3.8817 -1.8308 3.0978 38 1 3.0507 -2.8974 5.5433 39 1 4.0634 -3.7892 4.3624 40 1 0.9234 -3.4674 5.9988 41 1 0.1062 -3.0569 4.4532 42 1 -0.6646 -5.3059 4.1271 43 1 -0.7659 -5.1796 5.9096 44 1 0.2587 -7.1824 3.4578 45 1 1.4089 -8.1109 4.4494 46 1 -0.3040 -8.3330 6.2284 47 1 -1.4542 -7.4045 5.2369 48 1 -3.4122 -10.3018 6.3914 49 1 2.9835 -5.6737 5.4190 50 1 2.5376 -6.2420 3.7856 51 1 2.4321 -4.7402 2.1772 52 1 0.7157 -4.2981 2.4313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158636489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:14 Heat of formation + Delta-G solvation = -80.636368 kcal Electronic energy + Delta-G solvation = -28785.853946 eV Core-core repulsion = 24978.077224 eV Total energy + Delta-G solvation = -3807.776722 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13154 -40.05816 -37.52501 -36.32950 -34.33832 -33.48313 -32.12079 -30.40676 -29.12739 -28.73703 -27.69853 -27.63029 -26.00201 -24.20644 -23.01165 -21.90076 -21.64962 -19.96891 -19.54219 -19.29175 -17.95852 -16.77493 -16.62847 -16.37014 -15.39224 -15.26411 -15.15371 -14.89975 -14.46739 -14.38922 -14.02836 -13.96974 -13.51229 -13.23240 -13.02432 -12.84377 -12.75407 -12.43662 -12.36487 -12.24770 -12.16431 -12.11560 -12.00261 -11.81538 -11.61570 -11.50428 -11.31918 -11.04288 -10.92922 -10.84121 -10.63297 -10.59488 -10.51336 -10.48425 -10.18768 -9.82449 -9.33013 -9.11191 -8.90614 -8.31283 -7.74099 -5.96803 -3.99258 1.89227 2.69972 3.35559 3.39700 3.42202 3.65839 4.23552 4.29579 4.41366 4.43977 4.46645 4.49154 4.60001 4.62359 4.92368 5.08278 5.09812 5.16956 5.22968 5.25234 5.38284 5.39087 5.39808 5.46010 5.48823 5.52227 5.58809 5.59338 5.61171 5.68636 5.68914 5.80779 5.89321 5.92924 6.03033 6.04595 6.11191 6.14816 6.19019 6.27617 6.31182 6.42743 6.48593 6.98787 7.31066 7.47439 7.51310 7.78843 7.91809 8.10840 8.18510 8.46051 9.07910 9.64269 11.14503 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017631 B = 0.002519 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.716234 B =11114.027914 C =12029.223991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.666 3.334 7 O -0.565 6.565 8 N -0.603 5.603 9 C 0.107 3.893 10 C -0.115 4.115 11 C -0.094 4.094 12 C -0.113 4.113 13 C 0.047 3.953 14 N -0.528 5.528 15 C 0.058 3.942 16 C 0.030 3.970 17 C -0.522 4.522 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.059 3.941 26 C 0.140 3.860 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.024 0.976 47 H 0.015 0.985 48 H 0.261 0.739 49 H 0.080 0.920 50 H 0.055 0.945 51 H 0.073 0.927 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.130 23.489 -8.129 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.197 4.197 4 C -0.241 4.241 5 O -0.278 6.278 6 C 0.421 3.579 7 O -0.455 6.455 8 N -0.344 5.344 9 C -0.015 4.015 10 C -0.153 4.153 11 C -0.095 4.095 12 C -0.151 4.151 13 C -0.080 4.080 14 N -0.252 5.252 15 C -0.069 4.069 16 C -0.008 4.008 17 C -0.561 4.561 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.070 4.070 26 C 0.019 3.981 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.088 0.912 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.042 0.958 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.098 0.902 50 H 0.074 0.926 51 H 0.091 0.909 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 12.792 23.239 -7.878 27.673 hybrid contribution -0.482 -0.680 -1.418 1.645 sum 12.310 22.559 -9.296 27.329 Atomic orbital electron populations 1.22522 0.93929 1.05223 1.02440 1.22069 0.94451 0.91457 0.82160 1.21850 1.02151 0.92554 1.03100 1.22516 1.01445 1.03631 0.96469 1.86301 1.71548 1.23557 1.46354 1.17504 0.78769 0.80340 0.81265 1.90924 1.41283 1.70499 1.42749 1.47282 1.53121 1.12737 1.21279 1.22090 0.94500 0.97236 0.87719 1.22491 0.98420 0.95215 0.99212 1.21863 0.96556 0.97206 0.93899 1.22561 0.94713 0.97852 0.99994 1.23094 0.94508 0.89017 1.01431 1.63866 1.01531 1.04821 1.54972 1.22552 1.00218 0.89230 0.94945 1.19041 0.91292 0.94406 0.96030 1.21163 1.16364 1.07696 1.10908 0.92900 1.24988 0.96359 0.97908 0.95042 1.69965 1.22464 1.38810 1.21997 0.86668 0.78054 0.83532 0.79791 1.20239 1.21290 1.20300 1.22600 0.94721 0.90970 0.98686 1.22123 1.02363 0.79189 0.94399 0.92169 0.91150 0.89296 0.91545 0.90146 0.91491 0.89332 0.91143 0.92264 0.91213 0.91304 0.89273 0.90062 0.90302 0.91237 0.93520 0.90026 0.96051 0.92152 0.95764 0.96623 0.92973 0.90208 0.92629 0.90906 0.89768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.31 1.13 -90.62 -0.10 1.20 16 3 C -0.14 -0.93 8.85 37.16 0.33 -0.60 16 4 C -0.18 -1.74 8.37 37.16 0.31 -1.43 16 5 O -0.36 -4.27 9.49 -40.32 -0.38 -4.66 16 6 C 0.67 9.05 7.93 54.06 0.43 9.48 16 7 O -0.57 -9.05 12.16 -19.28 -0.23 -9.28 16 8 N -0.60 -7.24 3.34 -176.79 -0.59 -7.83 16 9 C 0.11 0.96 6.86 -2.83 -0.02 0.94 16 10 C -0.12 -0.96 5.85 -25.63 -0.15 -1.11 16 11 C -0.09 -1.06 0.61 -154.07 -0.09 -1.15 16 12 C -0.11 -1.39 5.96 -25.30 -0.15 -1.54 16 13 C 0.05 0.77 5.72 -2.05 -0.01 0.76 16 14 N -0.53 -9.26 5.18 -231.63 -1.20 -10.46 16 15 C 0.06 1.21 4.51 -3.83 -0.02 1.19 16 16 C 0.03 0.78 5.02 -27.88 -0.14 0.64 16 17 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 18 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 21 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.06 0.79 6.12 -3.47 -0.02 0.77 16 26 C 0.14 1.76 5.76 -3.25 -0.02 1.74 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 30 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.08 5.88 -51.93 -0.31 0.78 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.09 0.65 7.80 -51.93 -0.40 0.24 16 39 H 0.08 0.60 8.07 -51.93 -0.42 0.18 16 40 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 41 H 0.07 0.85 8.00 -51.93 -0.42 0.44 16 42 H 0.05 0.82 7.62 -51.93 -0.40 0.43 16 43 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 44 H 0.02 0.45 7.85 -51.93 -0.41 0.04 16 45 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 46 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.02 0.43 7.49 -51.93 -0.39 0.04 16 48 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 49 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 50 H 0.06 0.75 7.05 -51.93 -0.37 0.38 16 51 H 0.07 0.90 7.78 -51.93 -0.40 0.49 16 52 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 LS Contribution 400.66 15.07 6.04 6.04 Total: -1.00 -32.32 400.66 -10.06 -42.38 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -9.65 Total: -2.42 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: 0.24 Total: -4.27 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -1.05 Total: -44.68 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.62 Total: -13.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.32 -10.06 -42.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158636489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.257 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds