Wall clock time and date at job start Tue Mar 31 2020 15:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00122 * 2 1 4 4 C 1.50691 * 109.47301 * 61.39271 * 3 2 1 5 5 H 1.08004 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99795 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 120.00177 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47252 * 89.99761 * 8 6 4 10 10 H 1.48501 * 109.47392 * 209.99677 * 8 6 4 11 11 H 1.48498 * 109.47090 * 329.99837 * 8 6 4 12 12 C 1.46897 * 111.00183 * 236.03964 * 2 1 3 13 13 C 1.53606 * 108.45812 * 182.16584 * 12 2 1 14 14 C 1.53699 * 109.28726 * 67.01757 * 13 12 2 15 15 H 1.08997 * 112.58786 * 186.99269 * 14 13 12 16 16 C 1.54606 * 107.83188 * 311.29337 * 14 13 12 17 17 C 1.54313 * 104.85115 * 88.61140 * 16 14 13 18 18 C 1.54865 * 104.62836 * 0.07906 * 17 16 14 19 19 H 1.09001 * 112.19886 * 146.75220 * 18 17 16 20 20 C 1.53138 * 109.44014 * 302.23585 * 12 2 1 21 21 N 1.48298 * 104.30187 * 25.06679 * 18 17 16 22 22 C 1.34778 * 128.21280 * 138.44140 * 21 18 17 23 23 O 1.21505 * 119.99900 * 179.97438 * 22 21 18 24 24 O 1.34633 * 119.99832 * 359.97245 * 22 21 18 25 25 C 1.45200 * 117.00285 * 180.02562 * 24 22 21 26 26 C 1.52991 * 109.47032 * 59.99575 * 25 24 22 27 27 C 1.52998 * 109.47239 * 180.02562 * 25 24 22 28 28 C 1.53003 * 109.46535 * 299.99935 * 25 24 22 29 29 H 1.09008 * 109.47036 * 183.95547 * 1 2 3 30 30 H 1.09000 * 109.47661 * 303.95798 * 1 2 3 31 31 H 1.09000 * 109.47210 * 63.95626 * 1 2 3 32 32 H 1.08998 * 109.47105 * 181.39764 * 3 2 1 33 33 H 1.09007 * 109.46393 * 301.39413 * 3 2 1 34 34 H 0.97001 * 119.99678 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.43269 * 62.14391 * 12 2 1 36 36 H 1.09005 * 110.13369 * 306.60725 * 13 12 2 37 37 H 1.09001 * 108.59736 * 186.50151 * 13 12 2 38 38 H 1.09008 * 110.38262 * 207.48409 * 16 14 13 39 39 H 1.09001 * 110.38371 * 329.73305 * 16 14 13 40 40 H 1.08992 * 110.38463 * 118.87730 * 17 16 14 41 41 H 1.09003 * 110.37842 * 241.24039 * 17 16 14 42 42 H 1.09001 * 109.57640 * 174.05199 * 20 12 2 43 43 H 1.09000 * 109.67406 * 53.73960 * 20 12 2 44 44 H 1.09000 * 109.47289 * 60.00677 * 26 25 24 45 45 H 1.08999 * 109.47352 * 180.02562 * 26 25 24 46 46 H 1.09005 * 109.47378 * 300.00374 * 26 25 24 47 47 H 1.09000 * 109.47389 * 59.99924 * 27 25 24 48 48 H 1.08999 * 109.46681 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47106 * 299.99338 * 27 25 24 50 50 H 1.08995 * 109.47796 * 59.99975 * 28 25 24 51 51 H 1.09007 * 109.46959 * 180.02562 * 28 25 24 52 52 H 1.09000 * 109.47354 * 299.99623 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.5404 2.0842 1.2473 5 1 0.9222 1.5697 1.9682 6 6 1.9131 3.3931 1.4682 7 7 1.5156 4.0153 2.5566 8 14 2.9816 4.2831 0.2210 9 1 2.1167 4.9589 -0.7791 10 1 3.8169 5.2946 0.9170 11 1 3.8608 3.3034 -0.4663 12 6 1.9954 -0.7661 -1.1375 13 6 3.5290 -0.7739 -1.0505 14 6 3.9634 -1.5831 0.1819 15 1 5.0362 -1.5230 0.3653 16 6 3.1358 -1.0869 1.3899 17 6 1.8598 -1.9546 1.3782 18 6 2.0386 -2.8967 0.1622 19 1 1.5892 -3.8755 0.3300 20 6 1.4590 -2.1992 -1.0788 21 7 3.5074 -2.9790 -0.0246 22 6 4.2515 -4.0649 -0.3141 23 8 5.4560 -3.9611 -0.4358 24 8 3.6601 -5.2645 -0.4683 25 6 4.5234 -6.3901 -0.7785 26 6 5.5431 -6.5760 0.3467 27 6 3.6784 -7.6580 -0.9165 28 6 5.2581 -6.1218 -2.0935 29 1 -0.3633 -1.0253 0.0709 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4512 -0.9233 32 1 3.0847 1.3425 -0.0251 33 1 1.6258 1.9024 -0.8773 34 1 1.7781 4.9360 2.7121 35 1 1.6770 -0.2976 -2.0687 36 1 3.9053 0.2459 -0.9689 37 1 3.9259 -1.2404 -1.9521 38 1 3.6891 -1.2380 2.3169 39 1 2.8804 -0.0343 1.2684 40 1 1.7851 -2.5324 2.2993 41 1 0.9766 -1.3289 1.2489 42 1 1.7615 -2.7395 -1.9758 43 1 0.3711 -2.1815 -1.0127 44 1 5.0197 -6.7671 1.2835 45 1 6.1914 -7.4206 0.1137 46 1 6.1450 -5.6725 0.4446 47 1 2.9522 -7.5253 -1.7185 48 1 4.3265 -8.5030 -1.1490 49 1 3.1546 -7.8493 0.0201 50 1 5.8601 -5.2184 -1.9957 51 1 5.9059 -6.9670 -2.3267 52 1 4.5317 -5.9893 -2.8952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160542440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:45 Heat of formation + Delta-G solvation = -23.008381 kcal Electronic energy + Delta-G solvation = -30689.316290 eV Core-core repulsion = 26884.038505 eV Total energy + Delta-G solvation = -3805.277785 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.22059 -40.07582 -36.96632 -35.72139 -34.05078 -32.71483 -31.44637 -30.97221 -30.68045 -27.78025 -27.54164 -27.48090 -25.33747 -23.79745 -23.58391 -22.11330 -20.79307 -20.02289 -19.46856 -18.54761 -17.72216 -16.74167 -16.48741 -16.22552 -15.89615 -15.18112 -14.58571 -14.44855 -14.23676 -13.95135 -13.69739 -13.35080 -13.21703 -13.15191 -12.65532 -12.57821 -12.45621 -12.34381 -12.23189 -12.19085 -11.99915 -11.97474 -11.74138 -11.57678 -11.48463 -11.29975 -11.11626 -10.96066 -10.72462 -10.62917 -10.38046 -10.35651 -10.05221 -9.88380 -9.84173 -9.73491 -9.42808 -9.26337 -8.63887 -8.44599 -7.24029 -6.11985 -4.10308 2.24011 3.03896 3.23918 3.32556 3.33723 4.00730 4.36113 4.60938 4.62073 4.64882 4.78834 4.91984 4.94370 5.18515 5.24059 5.30640 5.34372 5.38978 5.40698 5.46810 5.53698 5.58195 5.61661 5.63468 5.72770 5.74086 5.82062 5.87157 5.92317 5.97899 6.11675 6.17501 6.18733 6.23018 6.26204 6.27516 6.42362 6.46059 6.53603 6.61963 6.68107 6.72587 6.81820 6.92048 7.11062 7.46074 7.53914 7.77219 7.86712 7.93866 8.53803 8.54722 8.95679 9.49580 11.00454 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.003448 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.769000 B = 8118.691866 C = 8406.983691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.512 5.512 3 C 0.147 3.853 4 C -0.512 4.512 5 H 0.084 0.916 6 C 0.072 3.928 7 N -0.896 5.896 8 Si 0.872 3.128 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.266 1.266 12 C 0.079 3.921 13 C -0.126 4.126 14 C 0.159 3.841 15 H 0.092 0.908 16 C -0.130 4.130 17 C -0.118 4.118 18 C 0.136 3.864 19 H 0.088 0.912 20 C -0.122 4.122 21 N -0.599 5.599 22 C 0.669 3.331 23 O -0.579 6.579 24 O -0.364 6.364 25 C 0.136 3.864 26 C -0.183 4.183 27 C -0.139 4.139 28 C -0.182 4.182 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.013 0.987 32 H 0.038 0.962 33 H -0.016 1.016 34 H 0.264 0.736 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.042 0.958 39 H 0.144 0.856 40 H 0.041 0.959 41 H 0.121 0.879 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.246 -19.314 -7.572 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.237 5.237 3 C 0.022 3.978 4 C -0.550 4.550 5 H 0.102 0.898 6 C -0.130 4.130 7 N -0.535 5.535 8 Si 0.699 3.301 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.191 1.191 12 C -0.030 4.030 13 C -0.164 4.164 14 C 0.058 3.942 15 H 0.110 0.890 16 C -0.167 4.167 17 C -0.156 4.156 18 C 0.033 3.967 19 H 0.106 0.894 20 C -0.160 4.160 21 N -0.338 5.338 22 C 0.425 3.575 23 O -0.470 6.470 24 O -0.279 6.279 25 C 0.099 3.901 26 C -0.240 4.240 27 C -0.196 4.196 28 C -0.239 4.239 29 H 0.073 0.927 30 H 0.104 0.896 31 H 0.032 0.968 32 H 0.055 0.945 33 H 0.002 0.998 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.061 0.939 39 H 0.162 0.838 40 H 0.059 0.941 41 H 0.139 0.861 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.865 -19.510 -7.134 20.970 hybrid contribution 0.416 0.869 -1.521 1.801 sum 3.282 -18.641 -8.655 20.812 Atomic orbital electron populations 1.22462 0.88770 1.00106 1.01440 1.63105 1.06934 1.15477 1.38164 1.20397 0.96108 0.84410 0.96930 1.20995 1.32811 0.96591 1.04646 0.89798 1.24881 0.95718 0.97334 0.95107 1.69886 1.45630 1.12083 1.25898 0.86921 0.81205 0.80086 0.81874 1.20485 1.21197 1.19105 1.21737 0.94425 0.93705 0.93099 1.22287 0.95419 1.01142 0.97552 1.22275 0.99219 0.76538 0.96183 0.88966 1.23076 0.93985 1.05641 0.94027 1.22923 1.02396 0.96357 0.93958 1.22362 0.79172 0.98922 0.96265 0.89405 1.22143 1.00710 0.95516 0.97659 1.48186 1.08759 1.06177 1.70723 1.17475 0.83450 0.80031 0.76555 1.90858 1.12938 1.85385 1.57809 1.86302 1.41580 1.16038 1.83985 1.21985 0.89616 0.83169 0.95366 1.22507 0.99504 1.04291 0.97678 1.21839 1.00220 0.94443 1.03142 1.22507 1.01238 1.04381 0.95815 0.92662 0.89602 0.96799 0.94462 0.99820 0.92605 0.94556 0.89530 0.92349 0.93895 0.83821 0.94052 0.86091 0.92145 0.90370 0.92269 0.91451 0.89301 0.91591 0.90379 0.91547 0.89319 0.91447 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 7.58 60.06 0.46 0.78 16 2 N -0.51 -8.96 0.60 -235.87 -0.14 -9.10 16 3 C 0.15 3.14 2.38 -4.98 -0.01 3.13 16 4 C -0.51 -13.03 8.42 -34.45 -0.29 -13.32 16 5 H 0.08 2.31 7.04 -52.48 -0.37 1.94 16 6 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 7 N -0.90 -26.01 13.96 55.43 0.77 -25.24 16 8 Si 0.87 20.43 27.47 -169.99 -4.67 15.76 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -5.95 6.54 56.52 0.37 -5.58 16 12 C 0.08 1.23 2.34 -67.33 -0.16 1.07 16 13 C -0.13 -1.99 5.13 -26.05 -0.13 -2.12 16 14 C 0.16 2.59 4.12 -65.73 -0.27 2.32 16 15 H 0.09 1.55 7.93 -51.93 -0.41 1.14 16 16 C -0.13 -2.22 5.92 -25.20 -0.15 -2.37 16 17 C -0.12 -1.82 5.94 -25.06 -0.15 -1.97 16 18 C 0.14 1.92 4.11 -65.59 -0.27 1.65 16 19 H 0.09 1.15 7.93 -51.93 -0.41 0.74 16 20 C -0.12 -1.63 5.18 -26.29 -0.14 -1.77 16 21 N -0.60 -9.37 2.75 -158.72 -0.44 -9.81 16 22 C 0.67 10.86 8.03 54.06 0.43 11.29 16 23 O -0.58 -10.37 12.20 -19.28 -0.24 -10.61 16 24 O -0.36 -5.19 9.47 -40.31 -0.38 -5.57 16 25 C 0.14 1.55 1.13 -90.62 -0.10 1.45 16 26 C -0.18 -2.05 8.37 37.15 0.31 -1.74 16 27 C -0.14 -1.16 8.85 37.16 0.33 -0.84 16 28 C -0.18 -2.02 8.37 37.16 0.31 -1.71 16 29 H 0.05 0.75 5.36 -51.92 -0.28 0.47 16 30 H 0.09 1.59 6.44 -51.93 -0.33 1.26 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.04 0.81 4.30 -51.93 -0.22 0.59 16 33 H -0.02 -0.35 7.57 -51.93 -0.39 -0.75 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 39 H 0.14 2.83 3.30 -51.93 -0.17 2.66 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.12 1.93 3.55 -51.93 -0.18 1.74 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 0.95 6.05 -51.93 -0.31 0.63 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 1.22 5.88 -51.93 -0.31 0.92 16 51 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -28.54 369.79 -8.11 -36.65 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -8.67 Total: 4.64 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: 0.07 Total: -2.30 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.20 Total: -44.15 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.62 Total: -16.18 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -28.54 -8.11 -36.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160542440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.644 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds