Wall clock time and date at job start Tue Mar 31 2020 15:08:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46904 * 111.00122 * 2 1 4 4 C 1.50691 * 109.47301 * 61.39271 * 3 2 1 5 5 H 1.08004 * 119.99745 * 0.02562 * 4 3 2 6 6 C 1.37872 * 120.00034 * 180.02562 * 4 3 2 7 7 N 1.31522 * 119.99795 * 179.97438 * 6 4 3 8 8 Si 1.86793 * 120.00177 * 0.02562 * 6 4 3 9 9 H 1.48499 * 109.47252 * 89.99761 * 8 6 4 10 10 H 1.48501 * 109.47392 * 209.99677 * 8 6 4 11 11 H 1.48498 * 109.47090 * 329.99837 * 8 6 4 12 12 C 1.46897 * 111.00183 * 236.03964 * 2 1 3 13 13 C 1.53606 * 108.45812 * 182.16584 * 12 2 1 14 14 C 1.53699 * 109.28726 * 67.01757 * 13 12 2 15 15 H 1.08997 * 112.58786 * 186.99269 * 14 13 12 16 16 C 1.54606 * 107.83188 * 311.29337 * 14 13 12 17 17 C 1.54313 * 104.85115 * 88.61140 * 16 14 13 18 18 C 1.54865 * 104.62836 * 0.07906 * 17 16 14 19 19 H 1.09001 * 112.19886 * 146.75220 * 18 17 16 20 20 C 1.53138 * 109.44014 * 302.23585 * 12 2 1 21 21 N 1.48298 * 104.30187 * 25.06679 * 18 17 16 22 22 C 1.34778 * 128.21280 * 138.44140 * 21 18 17 23 23 O 1.21505 * 119.99900 * 179.97438 * 22 21 18 24 24 O 1.34633 * 119.99832 * 359.97245 * 22 21 18 25 25 C 1.45200 * 117.00285 * 180.02562 * 24 22 21 26 26 C 1.52991 * 109.47032 * 59.99575 * 25 24 22 27 27 C 1.52998 * 109.47239 * 180.02562 * 25 24 22 28 28 C 1.53003 * 109.46535 * 299.99935 * 25 24 22 29 29 H 1.09008 * 109.47036 * 183.95547 * 1 2 3 30 30 H 1.09000 * 109.47661 * 303.95798 * 1 2 3 31 31 H 1.09000 * 109.47210 * 63.95626 * 1 2 3 32 32 H 1.08998 * 109.47105 * 181.39764 * 3 2 1 33 33 H 1.09007 * 109.46393 * 301.39413 * 3 2 1 34 34 H 0.97001 * 119.99678 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.43269 * 62.14391 * 12 2 1 36 36 H 1.09005 * 110.13369 * 306.60725 * 13 12 2 37 37 H 1.09001 * 108.59736 * 186.50151 * 13 12 2 38 38 H 1.09008 * 110.38262 * 207.48409 * 16 14 13 39 39 H 1.09001 * 110.38371 * 329.73305 * 16 14 13 40 40 H 1.08992 * 110.38463 * 118.87730 * 17 16 14 41 41 H 1.09003 * 110.37842 * 241.24039 * 17 16 14 42 42 H 1.09001 * 109.57640 * 174.05199 * 20 12 2 43 43 H 1.09000 * 109.67406 * 53.73960 * 20 12 2 44 44 H 1.09000 * 109.47289 * 60.00677 * 26 25 24 45 45 H 1.08999 * 109.47352 * 180.02562 * 26 25 24 46 46 H 1.09005 * 109.47378 * 300.00374 * 26 25 24 47 47 H 1.09000 * 109.47389 * 59.99924 * 27 25 24 48 48 H 1.08999 * 109.46681 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47106 * 299.99338 * 27 25 24 50 50 H 1.08995 * 109.47796 * 59.99975 * 28 25 24 51 51 H 1.09007 * 109.46959 * 180.02562 * 28 25 24 52 52 H 1.09000 * 109.47354 * 299.99623 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.5404 2.0842 1.2473 5 1 0.9222 1.5697 1.9682 6 6 1.9131 3.3931 1.4682 7 7 1.5156 4.0153 2.5566 8 14 2.9816 4.2831 0.2210 9 1 2.1167 4.9589 -0.7791 10 1 3.8169 5.2946 0.9170 11 1 3.8608 3.3034 -0.4663 12 6 1.9954 -0.7661 -1.1375 13 6 3.5290 -0.7739 -1.0505 14 6 3.9634 -1.5831 0.1819 15 1 5.0362 -1.5230 0.3653 16 6 3.1358 -1.0869 1.3899 17 6 1.8598 -1.9546 1.3782 18 6 2.0386 -2.8967 0.1622 19 1 1.5892 -3.8755 0.3300 20 6 1.4590 -2.1992 -1.0788 21 7 3.5074 -2.9790 -0.0246 22 6 4.2515 -4.0649 -0.3141 23 8 5.4560 -3.9611 -0.4358 24 8 3.6601 -5.2645 -0.4683 25 6 4.5234 -6.3901 -0.7785 26 6 5.5431 -6.5760 0.3467 27 6 3.6784 -7.6580 -0.9165 28 6 5.2581 -6.1218 -2.0935 29 1 -0.3633 -1.0253 0.0709 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4512 -0.9233 32 1 3.0847 1.3425 -0.0251 33 1 1.6258 1.9024 -0.8773 34 1 1.7781 4.9360 2.7121 35 1 1.6770 -0.2976 -2.0687 36 1 3.9053 0.2459 -0.9689 37 1 3.9259 -1.2404 -1.9521 38 1 3.6891 -1.2380 2.3169 39 1 2.8804 -0.0343 1.2684 40 1 1.7851 -2.5324 2.2993 41 1 0.9766 -1.3289 1.2489 42 1 1.7615 -2.7395 -1.9758 43 1 0.3711 -2.1815 -1.0127 44 1 5.0197 -6.7671 1.2835 45 1 6.1914 -7.4206 0.1137 46 1 6.1450 -5.6725 0.4446 47 1 2.9522 -7.5253 -1.7185 48 1 4.3265 -8.5030 -1.1490 49 1 3.1546 -7.8493 0.0201 50 1 5.8601 -5.2184 -1.9957 51 1 5.9059 -6.9670 -2.3267 52 1 4.5317 -5.9893 -2.8952 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160542440.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:08:44 Heat of formation + Delta-G solvation = -37.324878 kcal Electronic energy + Delta-G solvation = -30689.937100 eV Core-core repulsion = 26884.038505 eV Total energy + Delta-G solvation = -3805.898595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.47083 -41.22238 -38.16257 -37.08720 -35.04980 -34.61646 -32.72374 -32.38677 -31.95125 -29.48154 -28.34401 -28.26297 -26.79110 -25.08053 -24.89286 -23.52190 -22.12807 -21.31069 -20.68404 -19.76345 -19.19454 -18.42422 -17.61854 -17.49173 -17.03809 -16.40680 -16.31183 -15.66423 -15.40257 -15.16997 -14.90491 -14.74420 -14.49884 -14.33198 -14.27091 -13.74182 -13.65176 -13.58906 -13.32761 -13.26347 -13.11387 -12.89143 -12.84855 -12.83043 -12.67325 -12.55750 -12.49252 -12.36242 -12.20632 -11.98706 -11.83605 -11.59180 -11.39964 -11.35358 -11.18398 -11.06648 -10.99978 -10.79047 -10.68919 -9.69639 -8.66837 -8.20827 -6.21525 1.11821 1.36751 1.40341 1.48008 1.81309 2.38732 2.93369 3.12040 3.25366 3.70640 3.72062 3.79437 3.82700 3.97817 3.98878 4.14053 4.23447 4.25583 4.39161 4.42027 4.53522 4.55293 4.63108 4.64408 4.69825 4.78231 4.78533 4.81349 4.85504 4.90259 4.94393 5.00329 5.03570 5.09020 5.13279 5.14963 5.20549 5.22536 5.30499 5.32595 5.37976 5.40937 5.43664 5.53030 5.61580 5.80044 6.03165 6.09021 6.41577 6.65359 6.69823 6.87117 7.33251 7.41742 8.94770 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024690 B = 0.003448 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.769000 B = 8118.691866 C = 8406.983691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.512 5.512 3 C 0.159 3.841 4 C -0.500 4.500 5 H 0.052 0.948 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.931 3.069 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.248 1.248 12 C 0.080 3.920 13 C -0.121 4.121 14 C 0.161 3.839 15 H 0.080 0.920 16 C -0.130 4.130 17 C -0.115 4.115 18 C 0.141 3.859 19 H 0.107 0.893 20 C -0.113 4.113 21 N -0.600 5.600 22 C 0.667 3.333 23 O -0.602 6.602 24 O -0.365 6.365 25 C 0.123 3.877 26 C -0.179 4.179 27 C -0.133 4.133 28 C -0.178 4.178 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.017 0.983 32 H 0.039 0.961 33 H -0.020 1.020 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.032 0.968 39 H 0.120 0.880 40 H 0.045 0.955 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.092 0.908 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.068 0.932 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 -22.029 -9.762 24.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.237 5.237 3 C 0.032 3.968 4 C -0.538 4.538 5 H 0.071 0.929 6 C -0.185 4.185 7 N -0.588 5.588 8 Si 0.756 3.244 9 H -0.200 1.200 10 H -0.216 1.216 11 H -0.171 1.171 12 C -0.029 4.029 13 C -0.160 4.160 14 C 0.060 3.940 15 H 0.099 0.901 16 C -0.168 4.168 17 C -0.153 4.153 18 C 0.039 3.961 19 H 0.125 0.875 20 C -0.151 4.151 21 N -0.340 5.340 22 C 0.423 3.577 23 O -0.494 6.494 24 O -0.280 6.280 25 C 0.086 3.914 26 C -0.236 4.236 27 C -0.190 4.190 28 C -0.235 4.235 29 H 0.108 0.892 30 H 0.075 0.925 31 H 0.035 0.965 32 H 0.056 0.944 33 H -0.002 1.002 34 H 0.072 0.928 35 H 0.060 0.940 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.137 0.863 40 H 0.063 0.937 41 H 0.135 0.865 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.121 0.879 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.615 -22.264 -9.344 24.287 hybrid contribution 0.491 1.593 -0.782 1.841 sum 3.106 -20.671 -10.126 23.227 Atomic orbital electron populations 1.22438 0.87890 1.01833 1.00245 1.63053 1.07676 1.13263 1.39666 1.20133 0.96090 0.86202 0.94374 1.21230 1.30958 0.96377 1.05234 0.92947 1.25674 0.97402 0.98512 0.96865 1.70033 1.47976 1.12501 1.28275 0.85958 0.79763 0.79072 0.79617 1.19992 1.21562 1.17128 1.21815 0.93980 0.94816 0.92272 1.22221 0.95901 1.00351 0.97496 1.22115 0.98438 0.77431 0.96058 0.90147 1.22954 0.95149 1.04590 0.94080 1.22859 1.01063 0.96297 0.95080 1.22438 0.78351 0.99518 0.95843 0.87546 1.22109 1.01752 0.93569 0.97654 1.48181 1.09409 1.05757 1.70666 1.17597 0.83180 0.80630 0.76324 1.90858 1.14024 1.85853 1.58647 1.86312 1.42169 1.15763 1.83717 1.22426 0.90213 0.83352 0.95369 1.22465 0.99524 1.03746 0.97910 1.21862 1.00346 0.93249 1.03523 1.22455 1.01258 1.03951 0.95832 0.89187 0.92533 0.96479 0.94362 1.00204 0.92796 0.93967 0.90717 0.91522 0.94917 0.86261 0.93669 0.86502 0.90980 0.88321 0.92199 0.88907 0.92443 0.91112 0.87863 0.91307 0.92393 0.88979 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.73 7.58 127.69 0.97 1.70 16 2 N -0.51 -17.39 0.60 -900.15 -0.54 -17.93 16 3 C 0.16 6.71 2.38 85.55 0.20 6.92 16 4 C -0.50 -26.02 8.42 25.60 0.22 -25.80 16 5 H 0.05 3.01 7.04 -2.91 -0.02 2.99 16 6 C 0.01 0.71 5.47 84.65 0.46 1.17 16 7 N -0.95 -56.83 13.96 21.45 0.30 -56.53 16 8 Si 0.93 42.42 27.47 68.60 1.88 44.31 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 11 H -0.25 -10.42 6.54 99.48 0.65 -9.77 16 12 C 0.08 2.29 2.34 45.17 0.11 2.39 16 13 C -0.12 -3.69 5.13 31.03 0.16 -3.53 16 14 C 0.16 5.20 4.12 45.43 0.19 5.38 16 15 H 0.08 2.76 7.93 -2.39 -0.02 2.74 16 16 C -0.13 -4.46 5.92 31.59 0.19 -4.28 16 17 C -0.12 -3.39 5.94 31.68 0.19 -3.20 16 18 C 0.14 3.61 4.11 45.52 0.19 3.79 16 19 H 0.11 2.41 7.93 -2.39 -0.02 2.39 16 20 C -0.11 -2.62 5.18 30.88 0.16 -2.46 16 21 N -0.60 -17.95 2.75 -886.48 -2.44 -20.39 16 22 C 0.67 20.89 8.03 129.79 1.04 21.93 16 23 O -0.60 -21.52 12.20 19.83 0.24 -21.28 16 24 O -0.36 -9.65 9.47 -55.42 -0.52 -10.18 16 25 C 0.12 2.52 1.13 -10.80 -0.01 2.51 16 26 C -0.18 -3.73 8.37 71.98 0.60 -3.13 16 27 C -0.13 -1.75 8.85 71.98 0.64 -1.11 16 28 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 29 H 0.09 2.18 5.36 -2.38 -0.01 2.17 16 30 H 0.06 2.11 6.44 -2.39 -0.02 2.10 16 31 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.04 1.64 4.30 -2.39 -0.01 1.63 16 33 H -0.02 -0.85 7.57 -2.38 -0.02 -0.87 16 34 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 35 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 2.45 5.88 -2.38 -0.01 2.43 16 37 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 39 H 0.12 4.77 3.30 -2.39 -0.01 4.77 16 40 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.12 3.56 3.55 -2.39 -0.01 3.55 16 42 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 43 H 0.10 1.94 6.05 -2.39 -0.01 1.92 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 46 H 0.06 1.58 5.88 -2.38 -0.01 1.57 16 47 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 51 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 52 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.92 369.79 5.67 -58.24 By element: Atomic # 1 Polarization: 23.60 SS G_CDS: 0.85 Total: 24.45 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.90 Total: -0.70 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -2.68 Total: -94.85 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.28 Total: -31.46 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.88 Total: 44.31 kcal Total: -63.92 5.67 -58.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160542440.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.919 kcal (2) G-P(sol) polarization free energy of solvation -63.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds