Wall clock time and date at job start Tue Mar 31 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47175 * 239.99774 * 2 1 3 5 5 H 1.08000 * 120.00322 * 239.99902 * 4 2 1 6 6 C 1.37884 * 119.99979 * 60.00161 * 4 2 1 7 7 N 1.31508 * 119.99825 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99881 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47198 * 60.00186 * 8 6 4 10 10 H 1.48505 * 109.46857 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47039 * 299.99904 * 8 6 4 12 12 C 1.52996 * 109.46823 * 119.99528 * 2 1 3 13 13 N 1.46500 * 109.47578 * 300.00035 * 12 2 1 14 14 C 1.34773 * 119.99815 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00304 * 354.91645 * 14 13 12 16 16 N 1.34781 * 119.99917 * 174.92024 * 14 13 12 17 17 C 1.47160 * 120.98838 * 4.69576 * 16 14 13 18 18 C 1.52869 * 108.61427 * 230.54423 * 17 16 14 19 19 O 1.42972 * 109.30658 * 307.91385 * 18 17 16 20 20 C 1.42902 * 114.18819 * 62.36051 * 19 18 17 21 21 C 1.52957 * 109.56980 * 57.42962 * 20 19 18 22 22 C 1.52996 * 109.50534 * 60.40615 * 21 20 19 23 23 C 1.53007 * 109.46485 * 59.94180 * 22 21 20 24 24 C 1.53000 * 109.45495 * 299.94304 * 23 22 21 25 25 C 1.52951 * 109.58123 * 177.67099 * 20 19 18 26 26 C 1.47152 * 120.99440 * 184.98516 * 16 14 13 27 27 H 1.08999 * 109.47347 * 300.00299 * 1 2 3 28 28 H 1.09001 * 109.47086 * 59.99689 * 1 2 3 29 29 H 1.08993 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46609 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46997 * 299.99805 * 3 2 1 32 32 H 1.09002 * 109.47065 * 60.00138 * 3 2 1 33 33 H 0.97006 * 119.99926 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46884 * 60.00461 * 12 2 1 35 35 H 1.09002 * 109.47216 * 179.97438 * 12 2 1 36 36 H 0.96997 * 119.99804 * 0.02562 * 13 12 2 37 37 H 1.09003 * 109.67662 * 350.32448 * 17 16 14 38 38 H 1.08996 * 109.67782 * 110.87716 * 17 16 14 39 39 H 1.08996 * 109.58654 * 187.89918 * 18 17 16 40 40 H 1.09006 * 109.36709 * 67.79056 * 18 17 16 41 41 H 1.09004 * 109.46364 * 180.41738 * 21 20 19 42 42 H 1.09003 * 109.46399 * 300.39236 * 21 20 19 43 43 H 1.09000 * 109.47624 * 299.94608 * 22 21 20 44 44 H 1.08998 * 109.47509 * 179.97438 * 22 21 20 45 45 H 1.08994 * 109.47551 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47971 * 59.93730 * 23 22 21 47 47 H 1.08995 * 109.46974 * 300.05159 * 24 23 22 48 48 H 1.08992 * 109.47599 * 180.02562 * 24 23 22 49 49 H 1.09007 * 109.46037 * 59.59828 * 25 20 19 50 50 H 1.09003 * 109.46396 * 179.58209 * 25 20 19 51 51 H 1.09005 * 109.68143 * 249.20739 * 26 16 14 52 52 H 1.09010 * 109.67928 * 9.75275 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8280 -0.4193 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0399 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.4970 -1.5309 3.7828 16 7 1.5143 0.2003 4.7681 17 6 0.6763 1.4054 4.6625 18 6 1.3434 2.5341 5.4486 19 8 1.6374 2.0791 6.7717 20 6 2.5580 0.9874 6.8245 21 6 3.8634 1.3841 6.1330 22 6 4.4754 2.5893 6.8498 23 6 4.7602 2.2246 8.3082 24 6 3.4533 1.8307 8.9995 25 6 2.8407 0.6254 8.2834 26 6 1.9500 -0.2234 6.1083 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7090 1.1613 -3.4845 34 1 1.6766 -1.7488 1.2493 35 1 3.1299 -0.7216 1.2491 36 1 0.9937 0.7579 2.3564 37 1 0.5803 1.6952 3.6161 38 1 -0.3101 1.2042 5.0803 39 1 0.6716 3.3909 5.4991 40 1 2.2681 2.8245 4.9498 41 1 4.5616 0.5478 6.1677 42 1 3.6597 1.6442 5.0942 43 1 3.7778 3.4261 6.8142 44 1 5.4058 2.8713 6.3569 45 1 5.1966 3.0829 8.8189 46 1 5.4569 1.3871 8.3440 47 1 2.7563 2.6679 8.9629 48 1 3.6558 1.5712 10.0386 49 1 1.9090 0.3456 8.7753 50 1 3.5373 -0.2122 8.3213 51 1 1.0938 -0.5922 6.6731 52 1 2.6984 -1.0110 6.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335588253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:40 Heat of formation + Delta-G solvation = -84.005632 kcal Electronic energy + Delta-G solvation = -29837.128074 eV Core-core repulsion = 26029.205250 eV Total energy + Delta-G solvation = -3807.922824 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.95478 -39.19138 -36.73430 -36.34082 -34.49526 -33.36245 -32.02201 -31.00663 -30.65632 -28.69689 -26.46007 -25.74494 -25.40652 -24.30792 -23.77769 -22.75438 -21.32640 -19.79201 -19.28809 -18.91024 -18.04280 -16.39737 -16.23843 -15.95455 -15.63643 -15.26592 -15.15667 -14.82750 -14.63908 -14.07862 -13.97512 -13.77580 -13.59966 -13.55174 -12.91348 -12.75789 -12.49905 -12.43353 -12.29790 -12.18533 -11.93007 -11.75457 -11.40067 -11.24914 -11.19912 -11.13439 -10.85927 -10.74072 -10.73122 -10.59814 -10.40115 -10.26789 -10.19025 -9.89416 -9.74373 -9.64552 -9.31107 -8.81394 -8.62234 -8.40085 -8.12030 -6.03018 -4.12949 2.81088 3.29781 3.33931 3.37896 3.53407 3.55476 4.23051 4.39744 4.44277 4.51477 4.55530 4.76813 4.87165 4.95326 4.96119 5.08947 5.18485 5.23818 5.25713 5.32191 5.41773 5.44536 5.49716 5.60339 5.62014 5.73378 5.79226 5.85442 5.94450 5.98627 6.02713 6.14140 6.17269 6.25321 6.34964 6.47396 6.50365 6.77709 6.79724 6.89299 7.01415 7.05423 7.07119 7.21600 7.36793 7.54249 7.68640 7.99527 8.10731 8.34559 8.40095 8.86399 8.98549 9.52799 10.98471 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.002793 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.684437 B =10023.555286 C =10049.771101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.057 3.943 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.733 5.733 14 C 0.703 3.297 15 O -0.595 6.595 16 N -0.636 5.636 17 C 0.077 3.923 18 C 0.045 3.955 19 O -0.365 6.365 20 C 0.108 3.892 21 C -0.141 4.141 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.114 4.114 25 C -0.102 4.102 26 C 0.110 3.890 27 H 0.004 0.996 28 H 0.085 0.915 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.003 0.997 33 H 0.260 0.740 34 H 0.053 0.947 35 H 0.051 0.949 36 H 0.392 0.608 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.060 0.940 49 H 0.071 0.929 50 H 0.077 0.923 51 H 0.068 0.932 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.504 6.093 20.773 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.389 5.389 14 C 0.405 3.595 15 O -0.474 6.474 16 N -0.376 5.376 17 C -0.047 4.047 18 C -0.033 4.033 19 O -0.284 6.284 20 C 0.068 3.932 21 C -0.179 4.179 22 C -0.152 4.152 23 C -0.156 4.156 24 C -0.151 4.151 25 C -0.140 4.140 26 C -0.013 4.013 27 H 0.023 0.977 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.022 0.978 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.230 0.770 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.086 0.914 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.818 5.508 20.801 21.594 hybrid contribution 0.044 -0.162 -1.280 1.291 sum 1.861 5.347 19.520 20.325 Atomic orbital electron populations 1.21821 0.97799 0.99206 0.99905 1.18350 0.92768 0.92728 0.90531 1.21818 0.98561 0.98378 0.99886 1.20948 1.31542 1.12129 0.89861 0.92450 1.24873 0.94844 0.94916 0.98831 1.69790 1.36662 1.22733 1.23331 0.86626 0.79244 0.79806 0.82142 1.20266 1.21331 1.20275 1.21601 0.97742 0.95595 0.82419 1.45663 1.55590 1.33077 1.04566 1.15939 0.79872 0.83143 0.80551 1.90871 1.47145 1.23793 1.85600 1.47228 1.55560 1.29019 1.05744 1.22201 0.94819 0.85985 1.01686 1.22893 1.00189 0.96055 0.84140 1.87944 1.63585 1.50513 1.26384 1.21826 0.88778 0.86678 0.95953 1.22055 0.96623 0.99215 0.99991 1.21452 1.00417 0.97973 0.95373 1.21536 0.97390 1.00979 0.95727 1.21438 0.97036 0.98348 0.98322 1.21476 1.01438 0.98589 0.92483 1.22063 1.00354 0.97085 0.81848 0.97739 0.89588 0.95397 0.95458 0.89583 0.97788 0.92950 0.92873 0.93047 0.77035 0.89386 0.90767 0.87789 0.92171 0.90900 0.91243 0.91578 0.92171 0.92167 0.92165 0.91101 0.92120 0.91021 0.90396 0.91411 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.88 8.08 37.16 0.30 -2.58 16 4 C -0.51 -13.27 8.01 -34.44 -0.28 -13.54 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.65 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 8 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.23 4.51 -4.04 -0.02 3.21 16 13 N -0.73 -13.47 4.87 -65.23 -0.32 -13.79 16 14 C 0.70 12.92 8.31 -86.92 -0.72 12.20 16 15 O -0.60 -13.08 15.85 5.29 0.08 -12.99 16 16 N -0.64 -9.05 2.55 -178.28 -0.45 -9.51 16 17 C 0.08 0.87 6.60 -3.75 -0.02 0.84 16 18 C 0.04 0.44 6.58 37.09 0.24 0.69 16 19 O -0.37 -3.96 8.93 -35.23 -0.31 -4.28 16 20 C 0.11 1.14 0.68 -90.54 -0.06 1.08 16 21 C -0.14 -1.56 4.19 -26.76 -0.11 -1.67 16 22 C -0.11 -1.08 5.78 -26.73 -0.15 -1.23 16 23 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 24 C -0.11 -0.91 5.78 -26.73 -0.15 -1.07 16 25 C -0.10 -0.88 4.94 -26.76 -0.13 -1.02 16 26 C 0.11 1.39 5.28 -3.55 -0.02 1.37 16 27 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 28 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 29 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 2.12 6.07 -51.93 -0.32 1.81 16 32 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 33 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 36 H 0.39 6.52 3.68 -40.82 -0.15 6.37 16 37 H 0.09 0.98 5.67 -51.93 -0.29 0.68 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.63 6.26 -51.93 -0.32 0.31 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.90 6.11 -51.93 -0.32 0.58 16 43 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.63 7.70 -51.93 -0.40 0.23 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 52 H 0.10 1.39 7.11 -51.92 -0.37 1.02 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -29.05 380.93 -9.98 -39.03 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -9.06 Total: 5.66 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.16 Total: -2.57 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -0.25 Total: -46.28 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.23 Total: -17.27 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.05 -9.98 -39.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.977 kcal (2) G-P(sol) polarization free energy of solvation -29.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds