Wall clock time and date at job start Tue Mar 31 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47010 * 2 1 4 4 C 1.50696 * 109.47175 * 239.99774 * 2 1 3 5 5 H 1.08000 * 120.00322 * 239.99902 * 4 2 1 6 6 C 1.37884 * 119.99979 * 60.00161 * 4 2 1 7 7 N 1.31508 * 119.99825 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99881 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47198 * 60.00186 * 8 6 4 10 10 H 1.48505 * 109.46857 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47039 * 299.99904 * 8 6 4 12 12 C 1.52996 * 109.46823 * 119.99528 * 2 1 3 13 13 N 1.46500 * 109.47578 * 300.00035 * 12 2 1 14 14 C 1.34773 * 119.99815 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00304 * 354.91645 * 14 13 12 16 16 N 1.34781 * 119.99917 * 174.92024 * 14 13 12 17 17 C 1.47160 * 120.98838 * 4.69576 * 16 14 13 18 18 C 1.52869 * 108.61427 * 230.54423 * 17 16 14 19 19 O 1.42972 * 109.30658 * 307.91385 * 18 17 16 20 20 C 1.42902 * 114.18819 * 62.36051 * 19 18 17 21 21 C 1.52957 * 109.56980 * 57.42962 * 20 19 18 22 22 C 1.52996 * 109.50534 * 60.40615 * 21 20 19 23 23 C 1.53007 * 109.46485 * 59.94180 * 22 21 20 24 24 C 1.53000 * 109.45495 * 299.94304 * 23 22 21 25 25 C 1.52951 * 109.58123 * 177.67099 * 20 19 18 26 26 C 1.47152 * 120.99440 * 184.98516 * 16 14 13 27 27 H 1.08999 * 109.47347 * 300.00299 * 1 2 3 28 28 H 1.09001 * 109.47086 * 59.99689 * 1 2 3 29 29 H 1.08993 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46609 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46997 * 299.99805 * 3 2 1 32 32 H 1.09002 * 109.47065 * 60.00138 * 3 2 1 33 33 H 0.97006 * 119.99926 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46884 * 60.00461 * 12 2 1 35 35 H 1.09002 * 109.47216 * 179.97438 * 12 2 1 36 36 H 0.96997 * 119.99804 * 0.02562 * 13 12 2 37 37 H 1.09003 * 109.67662 * 350.32448 * 17 16 14 38 38 H 1.08996 * 109.67782 * 110.87716 * 17 16 14 39 39 H 1.08996 * 109.58654 * 187.89918 * 18 17 16 40 40 H 1.09006 * 109.36709 * 67.79056 * 18 17 16 41 41 H 1.09004 * 109.46364 * 180.41738 * 21 20 19 42 42 H 1.09003 * 109.46399 * 300.39236 * 21 20 19 43 43 H 1.09000 * 109.47624 * 299.94608 * 22 21 20 44 44 H 1.08998 * 109.47509 * 179.97438 * 22 21 20 45 45 H 1.08994 * 109.47551 * 179.97438 * 23 22 21 46 46 H 1.08999 * 109.47971 * 59.93730 * 23 22 21 47 47 H 1.08995 * 109.46974 * 300.05159 * 24 23 22 48 48 H 1.08992 * 109.47599 * 180.02562 * 24 23 22 49 49 H 1.09007 * 109.46037 * 59.59828 * 25 20 19 50 50 H 1.09003 * 109.46396 * 179.58209 * 25 20 19 51 51 H 1.09005 * 109.68143 * 249.20739 * 26 16 14 52 52 H 1.09010 * 109.67928 * 9.75275 * 26 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9437 0.8302 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8281 -2.5198 -4.0081 10 1 1.8280 -0.4193 -5.2204 11 1 3.8076 -1.1190 -4.0076 12 6 2.0399 -0.7211 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4913 3.6695 15 8 2.4970 -1.5309 3.7828 16 7 1.5143 0.2003 4.7681 17 6 0.6763 1.4054 4.6625 18 6 1.3434 2.5341 5.4486 19 8 1.6374 2.0791 6.7717 20 6 2.5580 0.9874 6.8245 21 6 3.8634 1.3841 6.1330 22 6 4.4754 2.5893 6.8498 23 6 4.7602 2.2246 8.3082 24 6 3.4533 1.8307 8.9995 25 6 2.8407 0.6254 8.2834 26 6 1.9500 -0.2234 6.1083 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.7090 1.1613 -3.4845 34 1 1.6766 -1.7488 1.2493 35 1 3.1299 -0.7216 1.2491 36 1 0.9937 0.7579 2.3564 37 1 0.5803 1.6952 3.6161 38 1 -0.3101 1.2042 5.0803 39 1 0.6716 3.3909 5.4991 40 1 2.2681 2.8245 4.9498 41 1 4.5616 0.5478 6.1677 42 1 3.6597 1.6442 5.0942 43 1 3.7778 3.4261 6.8142 44 1 5.4058 2.8713 6.3569 45 1 5.1966 3.0829 8.8189 46 1 5.4569 1.3871 8.3440 47 1 2.7563 2.6679 8.9629 48 1 3.6558 1.5712 10.0386 49 1 1.9090 0.3456 8.7753 50 1 3.5373 -0.2122 8.3213 51 1 1.0938 -0.5922 6.6731 52 1 2.6984 -1.0110 6.0190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335588253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:40 Heat of formation + Delta-G solvation = -99.346558 kcal Electronic energy + Delta-G solvation = -29837.793307 eV Core-core repulsion = 26029.205250 eV Total energy + Delta-G solvation = -3808.588057 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.00320 -40.46937 -38.24506 -37.45122 -35.65866 -35.02709 -33.09420 -32.43252 -31.65896 -29.64369 -27.79841 -27.58646 -27.25290 -25.82049 -24.67777 -23.52109 -22.32414 -20.86403 -20.67935 -20.28711 -19.36324 -17.84561 -17.43536 -17.22754 -16.82624 -16.72068 -16.34829 -16.04714 -15.66540 -15.27597 -15.22257 -15.11388 -14.72057 -14.63811 -14.33419 -14.20828 -14.07134 -13.31134 -13.23679 -13.18587 -13.13600 -13.09106 -12.82324 -12.69669 -12.64765 -12.58912 -12.26848 -12.14561 -11.99995 -11.96612 -11.50701 -11.46233 -11.43567 -11.32786 -11.22209 -10.94013 -10.73893 -10.72721 -10.40722 -10.08279 -9.38136 -8.03146 -6.18756 1.44004 1.44828 1.50715 1.57015 2.09962 2.45067 2.72751 2.94733 3.20587 3.56710 3.69676 3.76277 3.91822 4.05507 4.11720 4.19665 4.29473 4.36949 4.43434 4.47887 4.50606 4.52267 4.57708 4.66709 4.68618 4.69953 4.71229 4.85775 4.90435 4.96706 5.02548 5.05864 5.07704 5.11834 5.17448 5.24809 5.26308 5.33383 5.35081 5.35798 5.44314 5.57812 5.58414 5.65420 5.66269 5.87422 6.13263 6.19862 6.21470 6.42486 6.84792 6.94905 7.48832 7.52579 8.95816 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.025433 B = 0.002793 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.684437 B =10023.555286 C =10049.771101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.054 3.946 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.726 5.726 14 C 0.701 3.299 15 O -0.637 6.637 16 N -0.629 5.629 17 C 0.072 3.928 18 C 0.046 3.954 19 O -0.366 6.366 20 C 0.115 3.885 21 C -0.139 4.139 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.110 4.110 25 C -0.102 4.102 26 C 0.106 3.894 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.403 0.597 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.134 0.866 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.077 0.923 49 H 0.079 0.921 50 H 0.083 0.917 51 H 0.080 0.920 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 7.385 22.500 23.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.175 4.175 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.383 5.383 14 C 0.402 3.598 15 O -0.519 6.519 16 N -0.367 5.367 17 C -0.051 4.051 18 C -0.031 4.031 19 O -0.285 6.285 20 C 0.074 3.926 21 C -0.177 4.177 22 C -0.148 4.148 23 C -0.155 4.155 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.017 4.017 27 H 0.052 0.948 28 H 0.083 0.917 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.242 0.758 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.151 0.849 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.066 0.934 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.102 0.898 51 H 0.098 0.902 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.239 6.847 22.563 23.612 hybrid contribution 0.204 -0.556 -1.779 1.875 sum 1.442 6.292 20.784 21.763 Atomic orbital electron populations 1.21662 0.97143 0.98622 1.00285 1.18337 0.93210 0.93064 0.90070 1.21647 0.97869 0.97746 1.00278 1.21236 1.31907 1.12264 0.91563 0.93772 1.25431 0.95088 0.95575 1.00887 1.69888 1.36876 1.23196 1.23725 0.85825 0.78641 0.78810 0.79582 1.20328 1.20701 1.20264 1.21143 0.96567 0.94735 0.83250 1.45362 1.55863 1.33211 1.03882 1.16059 0.79578 0.82931 0.81224 1.90840 1.48963 1.25800 1.86283 1.47256 1.55025 1.29272 1.05131 1.22476 0.95159 0.85051 1.02415 1.23002 1.00398 0.96214 0.83480 1.87956 1.63436 1.50276 1.26828 1.21792 0.88174 0.85727 0.96875 1.22020 0.96988 0.99646 0.99077 1.21422 1.00172 0.96980 0.96243 1.21541 0.97693 1.01562 0.94701 1.21415 0.96567 0.97632 0.99084 1.21523 1.02142 0.99237 0.91051 1.22242 1.00504 0.97802 0.81156 0.94753 0.91665 0.96415 0.96376 0.91708 0.94723 0.92948 0.94787 0.94712 0.75795 0.89122 0.89068 0.84863 0.92896 0.91860 0.93416 0.91724 0.92209 0.90992 0.91992 0.91680 0.90453 0.90213 0.89848 0.90155 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.20 8.08 71.98 0.58 -4.62 16 4 C -0.53 -28.27 8.01 25.60 0.21 -28.07 16 5 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 6 C 0.03 1.59 5.15 84.66 0.44 2.02 16 7 N -0.90 -47.63 9.35 21.45 0.20 -47.43 16 8 Si 0.94 42.62 29.54 68.60 2.03 44.64 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.17 7.36 4.51 86.38 0.39 7.75 16 13 N -0.73 -26.37 4.87 -478.54 -2.33 -28.70 16 14 C 0.70 25.71 8.31 179.05 1.49 27.20 16 15 O -0.64 -28.63 15.85 -3.99 -0.06 -28.70 16 16 N -0.63 -17.31 2.55 -836.21 -2.13 -19.44 16 17 C 0.07 1.45 6.60 86.21 0.57 2.02 16 18 C 0.05 0.80 6.58 71.94 0.47 1.27 16 19 O -0.37 -7.05 8.93 -148.98 -1.33 -8.38 16 20 C 0.11 2.26 0.68 -10.74 -0.01 2.25 16 21 C -0.14 -3.01 4.19 30.58 0.13 -2.88 16 22 C -0.11 -1.94 5.78 30.60 0.18 -1.76 16 23 C -0.12 -1.66 5.92 30.60 0.18 -1.47 16 24 C -0.11 -1.47 5.78 30.59 0.18 -1.29 16 25 C -0.10 -1.55 4.94 30.58 0.15 -1.40 16 26 C 0.11 2.58 5.28 86.34 0.46 3.03 16 27 H 0.03 1.28 6.86 -2.39 -0.02 1.26 16 28 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 32 H 0.03 1.27 6.86 -2.39 -0.02 1.25 16 33 H 0.26 13.34 8.31 -92.70 -0.77 12.57 16 34 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.03 1.62 8.14 -2.39 -0.02 1.61 16 36 H 0.40 12.71 3.68 -92.71 -0.34 12.37 16 37 H 0.09 1.79 5.67 -2.39 -0.01 1.77 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.13 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.02 6.26 -2.38 -0.01 1.00 16 41 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 42 H 0.05 1.22 6.11 -2.39 -0.01 1.21 16 43 H 0.06 1.15 7.70 -2.39 -0.02 1.14 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.98 7.70 -2.39 -0.02 0.96 16 48 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 50 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 51 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 52 H 0.08 2.29 7.11 -2.38 -0.02 2.27 16 Total: -1.00 -62.92 380.93 2.89 -60.03 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 0.56 Total: 26.17 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.96 Total: 1.80 kcal Atomic # 7 Polarization: -91.30 SS G_CDS: -4.26 Total: -95.56 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: -1.39 Total: -37.08 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -62.92 2.89 -60.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335588253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.316 kcal (2) G-P(sol) polarization free energy of solvation -62.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds