Wall clock time and date at job start Tue Mar 31 2020 13:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.52998 * 109.46843 * 120.00122 * 2 1 3 5 5 N 1.46504 * 109.47550 * 65.00172 * 4 2 1 6 6 C 1.34784 * 119.99496 * 270.00094 * 5 4 2 7 7 O 1.21342 * 120.00165 * 4.66944 * 6 5 4 8 8 C 1.49454 * 119.99270 * 184.66831 * 6 5 4 9 9 O 1.21341 * 120.00457 * 354.54725 * 8 6 5 10 10 N 1.34777 * 119.99218 * 174.55284 * 8 6 5 11 11 C 1.46504 * 119.99804 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47458 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47368 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99962 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99764 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99822 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47390 * 60.00422 * 18 16 14 20 20 H 1.48508 * 109.47006 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47387 * 299.99798 * 18 16 14 22 22 C 1.46497 * 120.00251 * 89.99432 * 5 4 2 23 23 C 1.54269 * 110.03292 * 348.65349 * 22 5 4 24 24 C 1.54957 * 104.16056 * 95.75156 * 23 22 5 25 25 C 1.54890 * 102.78060 * 37.88916 * 24 23 22 26 26 C 1.53872 * 110.03025 * 105.86831 * 22 5 4 27 27 H 1.09001 * 109.47419 * 299.99970 * 1 2 3 28 28 H 1.09007 * 109.47196 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47099 * 239.99661 * 2 1 3 31 31 H 1.09001 * 109.46808 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47227 * 299.99941 * 3 2 1 33 33 H 1.09001 * 109.46936 * 59.99734 * 3 2 1 34 34 H 1.09003 * 109.47196 * 305.00049 * 4 2 1 35 35 H 1.09000 * 109.47061 * 184.99708 * 4 2 1 36 36 H 0.96999 * 120.00394 * 359.97438 * 10 8 6 37 37 H 1.09005 * 109.46767 * 299.99264 * 11 10 8 38 38 H 1.09003 * 109.47308 * 59.99165 * 11 10 8 39 39 H 1.09005 * 109.46644 * 299.99478 * 12 11 10 40 40 H 1.09003 * 109.47429 * 59.99378 * 12 11 10 41 41 H 1.09005 * 109.46770 * 299.99350 * 13 12 11 42 42 H 1.08994 * 109.47548 * 59.99114 * 13 12 11 43 43 H 0.97002 * 119.99906 * 180.02562 * 17 16 14 44 44 H 1.09001 * 110.01597 * 227.26088 * 22 5 4 45 45 H 1.09005 * 110.48535 * 214.40308 * 23 22 5 46 46 H 1.09006 * 110.48309 * 337.04233 * 23 22 5 47 47 H 1.09004 * 110.72005 * 279.57243 * 24 23 22 48 48 H 1.09002 * 110.92710 * 156.29952 * 24 23 22 49 49 H 1.08996 * 110.48830 * 203.40478 * 25 24 23 50 50 H 1.08997 * 110.60000 * 80.81635 * 25 24 23 51 51 H 1.08997 * 110.03289 * 359.95215 * 26 22 5 52 52 H 1.08997 * 110.03335 * 121.38199 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.4767 -2.5313 1.7156 7 8 -0.2983 -1.7104 2.1606 8 6 0.1276 -3.9841 1.7497 9 8 0.8556 -4.7957 1.2170 10 7 -0.9959 -4.3927 2.3720 11 6 -1.3378 -5.8168 2.4060 12 6 -2.6506 -6.0082 3.1681 13 6 -3.0073 -7.4955 3.2041 14 6 -4.3000 -7.6840 3.9554 15 1 -4.8154 -6.8285 4.3665 16 6 -4.8249 -8.9486 4.1179 17 7 -4.1971 -9.9904 3.6178 18 14 -6.4269 -9.1823 5.0498 19 1 -7.5103 -8.4291 4.3685 20 1 -6.7732 -10.6260 5.0846 21 1 -6.2704 -8.6777 6.4377 22 6 2.5426 -3.1114 0.5612 23 6 3.6689 -2.3859 -0.2036 24 6 4.8514 -2.3602 0.7975 25 6 4.7434 -3.7410 1.4909 26 6 3.2252 -3.9723 1.6385 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6052 -0.2618 2.1370 35 1 3.1262 -0.6444 1.2952 36 1 -1.5776 -3.7439 2.7981 37 1 -1.4515 -6.1875 1.3872 38 1 -0.5432 -6.3695 2.9071 39 1 -2.5364 -5.6376 4.1869 40 1 -3.4454 -5.4554 2.6673 41 1 -3.1213 -7.8665 2.1855 42 1 -2.2124 -8.0479 3.7051 43 1 -4.5665 -10.8800 3.7318 44 1 1.9768 -3.7461 -0.1208 45 1 3.9407 -2.9424 -1.1007 46 1 3.3635 -1.3716 -0.4607 47 1 4.7271 -1.5540 1.5205 48 1 5.8027 -2.2643 0.2740 49 1 5.2222 -3.7148 2.4698 50 1 5.1891 -4.5180 0.8699 51 1 2.8948 -3.6615 2.6296 52 1 2.9908 -5.0248 1.4793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343140667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:21 Heat of formation + Delta-G solvation = -90.503112 kcal Electronic energy + Delta-G solvation = -28687.820694 eV Core-core repulsion = 24879.616118 eV Total energy + Delta-G solvation = -3808.204576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.21148 -39.03510 -38.12745 -36.13057 -35.62090 -33.71682 -33.20929 -31.23200 -29.27587 -28.22357 -27.50332 -27.34472 -26.45360 -24.08211 -22.43170 -21.07135 -20.97433 -20.78706 -20.33777 -19.16372 -17.86453 -16.99875 -16.42065 -16.19696 -15.85557 -15.79095 -15.32549 -14.98923 -14.76411 -14.49949 -14.42069 -14.04130 -13.77693 -13.61587 -13.17785 -12.99259 -12.47169 -12.30334 -12.17982 -12.11141 -11.89266 -11.82244 -11.77831 -11.63354 -11.45500 -11.36556 -11.15148 -11.07950 -10.90303 -10.88768 -10.74976 -10.72313 -10.71000 -10.62539 -9.89021 -9.64229 -9.26011 -9.11718 -8.98019 -8.80667 -8.37845 -6.02799 -4.05792 1.49203 2.34972 3.26245 3.32381 3.36863 3.38966 3.46727 4.28268 4.36720 4.41379 4.45480 4.54282 4.62226 4.67737 4.77114 5.06748 5.18790 5.22413 5.27124 5.30792 5.33096 5.33270 5.39311 5.44705 5.54382 5.60964 5.61327 5.64350 5.67041 5.68700 5.70015 5.81735 5.84881 5.95187 6.02781 6.08759 6.11014 6.17745 6.23300 6.30991 6.36465 6.54685 6.72632 6.95643 6.96975 7.39150 7.61297 7.73319 7.78046 7.95532 8.12584 8.36950 9.00475 9.58463 11.08456 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.002374 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.035186 B =11791.781700 C =12891.414989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.111 3.889 5 N -0.579 5.579 6 C 0.506 3.494 7 O -0.518 6.518 8 C 0.497 3.503 9 O -0.518 6.518 10 N -0.693 5.693 11 C 0.116 3.884 12 C -0.123 4.123 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.140 3.860 23 C -0.145 4.145 24 C -0.126 4.126 25 C -0.126 4.126 26 C -0.125 4.125 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.409 0.591 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.060 0.940 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.120 20.746 -8.225 29.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.203 4.203 4 C -0.011 4.011 5 N -0.312 5.312 6 C 0.289 3.711 7 O -0.394 6.394 8 C 0.277 3.723 9 O -0.395 6.395 10 N -0.345 5.345 11 C -0.006 4.006 12 C -0.161 4.161 13 C -0.012 4.012 14 C -0.562 4.562 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C 0.037 3.963 23 C -0.183 4.183 24 C -0.163 4.163 25 C -0.164 4.164 26 C -0.163 4.163 27 H 0.080 0.920 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 44 H 0.121 0.879 45 H 0.098 0.902 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.082 0.918 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.201 20.372 -8.374 29.220 hybrid contribution -1.177 -0.010 0.721 1.380 sum 18.024 20.362 -7.654 28.250 Atomic orbital electron populations 1.21821 0.94147 1.02196 1.01474 1.21644 0.97245 0.96255 0.98280 1.21779 1.00722 0.95514 1.02260 1.21763 1.00494 0.79800 0.99003 1.47964 1.18264 1.08675 1.56333 1.20318 0.82157 0.89586 0.79079 1.90748 1.48343 1.54327 1.45931 1.20044 0.82600 0.88892 0.80779 1.90712 1.49342 1.54969 1.44443 1.46078 1.23282 1.10967 1.54194 1.21801 0.98911 0.78157 1.01771 1.21921 0.93304 1.02207 0.98626 1.19019 0.96644 0.88004 0.97567 1.21166 1.07214 0.92693 1.35077 0.92644 1.25024 0.97493 0.96115 0.95799 1.69951 1.39244 0.98686 1.45443 0.86633 0.83823 0.76986 0.80412 1.20216 1.21274 1.20227 1.22063 0.90652 0.88834 0.94730 1.22962 0.94974 1.01722 0.98625 1.22588 0.98014 0.97718 0.98009 1.22411 0.96640 0.96873 1.00497 1.22599 0.93792 1.01710 0.98194 0.92028 0.93415 0.92769 0.90757 0.92663 0.92333 0.92381 0.89793 0.89554 0.75490 0.91215 0.91225 0.92514 0.92484 0.96237 0.96245 0.92862 0.87944 0.90184 0.89918 0.91613 0.91470 0.91822 0.91438 0.92139 0.89422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 7.87 37.16 0.29 -1.10 16 2 C -0.11 -0.91 2.66 -90.62 -0.24 -1.15 16 3 C -0.14 -0.89 9.19 37.16 0.34 -0.55 16 4 C 0.11 0.96 4.26 -4.04 -0.02 0.95 16 5 N -0.58 -6.17 2.33 -165.34 -0.39 -6.56 16 6 C 0.51 6.73 6.26 -11.58 -0.07 6.66 16 7 O -0.52 -7.59 13.93 5.50 0.08 -7.52 16 8 C 0.50 7.32 7.61 -11.58 -0.09 7.23 16 9 O -0.52 -8.15 11.24 5.50 0.06 -8.09 16 10 N -0.69 -10.39 5.55 -60.73 -0.34 -10.73 16 11 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 12 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 13 C 0.03 0.63 4.97 -27.88 -0.14 0.50 16 14 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.69 13.29 55.43 0.74 -25.96 16 18 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 22 C 0.14 1.40 2.77 -66.81 -0.18 1.21 16 23 C -0.15 -1.05 5.81 -25.03 -0.15 -1.19 16 24 C -0.13 -0.83 6.64 -24.70 -0.16 -1.00 16 25 C -0.13 -1.01 6.83 -25.07 -0.17 -1.19 16 26 C -0.12 -1.30 4.97 -25.61 -0.13 -1.43 16 27 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.66 5.97 -51.93 -0.31 0.35 16 30 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.82 7.49 -51.93 -0.39 0.43 16 35 H 0.09 0.60 4.88 -51.93 -0.25 0.34 16 36 H 0.41 5.72 7.96 -40.82 -0.32 5.39 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.10 1.21 6.51 -51.93 -0.34 0.87 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.08 0.54 4.12 -51.93 -0.21 0.33 16 47 H 0.07 0.42 6.61 -51.93 -0.34 0.08 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 51 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 52 H 0.09 1.08 6.90 -51.93 -0.36 0.72 16 LS Contribution 395.30 15.07 5.96 5.96 Total: -1.00 -30.30 395.30 -9.35 -39.65 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -9.15 Total: 1.75 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -1.29 Total: -5.02 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.01 Total: -43.25 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: 0.14 Total: -15.60 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.30 -9.35 -39.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.855 kcal (2) G-P(sol) polarization free energy of solvation -30.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds