Wall clock time and date at job start Tue Mar 31 2020 13:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47149 * 2 1 4 4 C 1.52998 * 109.46843 * 120.00122 * 2 1 3 5 5 N 1.46504 * 109.47550 * 65.00172 * 4 2 1 6 6 C 1.34784 * 119.99496 * 270.00094 * 5 4 2 7 7 O 1.21342 * 120.00165 * 4.66944 * 6 5 4 8 8 C 1.49454 * 119.99270 * 184.66831 * 6 5 4 9 9 O 1.21341 * 120.00457 * 354.54725 * 8 6 5 10 10 N 1.34777 * 119.99218 * 174.55284 * 8 6 5 11 11 C 1.46504 * 119.99804 * 180.02562 * 10 8 6 12 12 C 1.52995 * 109.47458 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47368 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47125 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00129 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99962 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99764 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99822 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47390 * 60.00422 * 18 16 14 20 20 H 1.48508 * 109.47006 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47387 * 299.99798 * 18 16 14 22 22 C 1.46497 * 120.00251 * 89.99432 * 5 4 2 23 23 C 1.54269 * 110.03292 * 348.65349 * 22 5 4 24 24 C 1.54957 * 104.16056 * 95.75156 * 23 22 5 25 25 C 1.54890 * 102.78060 * 37.88916 * 24 23 22 26 26 C 1.53872 * 110.03025 * 105.86831 * 22 5 4 27 27 H 1.09001 * 109.47419 * 299.99970 * 1 2 3 28 28 H 1.09007 * 109.47196 * 60.00059 * 1 2 3 29 29 H 1.09000 * 109.47460 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47099 * 239.99661 * 2 1 3 31 31 H 1.09001 * 109.46808 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47227 * 299.99941 * 3 2 1 33 33 H 1.09001 * 109.46936 * 59.99734 * 3 2 1 34 34 H 1.09003 * 109.47196 * 305.00049 * 4 2 1 35 35 H 1.09000 * 109.47061 * 184.99708 * 4 2 1 36 36 H 0.96999 * 120.00394 * 359.97438 * 10 8 6 37 37 H 1.09005 * 109.46767 * 299.99264 * 11 10 8 38 38 H 1.09003 * 109.47308 * 59.99165 * 11 10 8 39 39 H 1.09005 * 109.46644 * 299.99478 * 12 11 10 40 40 H 1.09003 * 109.47429 * 59.99378 * 12 11 10 41 41 H 1.09005 * 109.46770 * 299.99350 * 13 12 11 42 42 H 1.08994 * 109.47548 * 59.99114 * 13 12 11 43 43 H 0.97002 * 119.99906 * 180.02562 * 17 16 14 44 44 H 1.09001 * 110.01597 * 227.26088 * 22 5 4 45 45 H 1.09005 * 110.48535 * 214.40308 * 23 22 5 46 46 H 1.09006 * 110.48309 * 337.04233 * 23 22 5 47 47 H 1.09004 * 110.72005 * 279.57243 * 24 23 22 48 48 H 1.09002 * 110.92710 * 156.29952 * 24 23 22 49 49 H 1.08996 * 110.48830 * 203.40478 * 25 24 23 50 50 H 1.08997 * 110.60000 * 80.81635 * 25 24 23 51 51 H 1.08997 * 110.03289 * 359.95215 * 26 22 5 52 52 H 1.08997 * 110.03335 * 121.38199 * 26 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1906 6 6 0.4767 -2.5313 1.7156 7 8 -0.2983 -1.7104 2.1606 8 6 0.1276 -3.9841 1.7497 9 8 0.8556 -4.7957 1.2170 10 7 -0.9959 -4.3927 2.3720 11 6 -1.3378 -5.8168 2.4060 12 6 -2.6506 -6.0082 3.1681 13 6 -3.0073 -7.4955 3.2041 14 6 -4.3000 -7.6840 3.9554 15 1 -4.8154 -6.8285 4.3665 16 6 -4.8249 -8.9486 4.1179 17 7 -4.1971 -9.9904 3.6178 18 14 -6.4269 -9.1823 5.0498 19 1 -7.5103 -8.4291 4.3685 20 1 -6.7732 -10.6260 5.0846 21 1 -6.2704 -8.6777 6.4377 22 6 2.5426 -3.1114 0.5612 23 6 3.6689 -2.3859 -0.2036 24 6 4.8514 -2.3602 0.7975 25 6 4.7434 -3.7410 1.4909 26 6 3.2252 -3.9723 1.6385 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6052 -0.2618 2.1370 35 1 3.1262 -0.6444 1.2952 36 1 -1.5776 -3.7439 2.7981 37 1 -1.4515 -6.1875 1.3872 38 1 -0.5432 -6.3695 2.9071 39 1 -2.5364 -5.6376 4.1869 40 1 -3.4454 -5.4554 2.6673 41 1 -3.1213 -7.8665 2.1855 42 1 -2.2124 -8.0479 3.7051 43 1 -4.5665 -10.8800 3.7318 44 1 1.9768 -3.7461 -0.1208 45 1 3.9407 -2.9424 -1.1007 46 1 3.3635 -1.3716 -0.4607 47 1 4.7271 -1.5540 1.5205 48 1 5.8027 -2.2643 0.2740 49 1 5.2222 -3.7148 2.4698 50 1 5.1891 -4.5180 0.8699 51 1 2.8948 -3.6615 2.6296 52 1 2.9908 -5.0248 1.4793 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343140667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:20 Heat of formation + Delta-G solvation = -107.655506 kcal Electronic energy + Delta-G solvation = -28688.564477 eV Core-core repulsion = 24879.616118 eV Total energy + Delta-G solvation = -3808.948360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22120 -40.11326 -39.08812 -37.10705 -36.84981 -35.29799 -34.37600 -33.03747 -30.00380 -29.05710 -28.92272 -28.02947 -27.58106 -25.58409 -23.82758 -22.38314 -21.93043 -21.64621 -21.25380 -20.18111 -18.87708 -18.48002 -18.04810 -17.24893 -16.96515 -16.64110 -16.53333 -16.40880 -16.04889 -15.60749 -15.36819 -15.16110 -14.88557 -14.35917 -14.27031 -14.15154 -13.79609 -13.68398 -13.50846 -13.19642 -12.91809 -12.75858 -12.74185 -12.65095 -12.54739 -12.44958 -12.39542 -12.22344 -11.99670 -11.87854 -11.78837 -11.71816 -11.64355 -11.55038 -11.46367 -11.32170 -11.25074 -10.55496 -10.41156 -10.25255 -9.74508 -8.20500 -6.31604 0.35571 1.30149 1.41090 1.43712 1.51625 2.12139 2.37766 2.43896 3.13191 3.29079 3.59102 3.70493 3.85948 3.96224 4.02905 4.07775 4.11726 4.16300 4.43778 4.49433 4.50780 4.53700 4.55436 4.60532 4.65748 4.76696 4.81285 4.85620 4.89699 4.89965 4.97600 4.99141 5.05445 5.10033 5.12769 5.17097 5.21386 5.24510 5.31140 5.35308 5.41222 5.44945 5.48052 5.49790 5.52423 5.68837 5.82779 5.95575 6.20919 6.26061 6.69465 6.84880 6.95340 7.37664 8.91238 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019548 B = 0.002374 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.035186 B =11791.781700 C =12891.414989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.110 4.110 3 C -0.140 4.140 4 C 0.109 3.891 5 N -0.567 5.567 6 C 0.506 3.494 7 O -0.535 6.535 8 C 0.493 3.507 9 O -0.529 6.529 10 N -0.691 5.691 11 C 0.131 3.869 12 C -0.105 4.105 13 C 0.027 3.973 14 C -0.544 4.544 15 H 0.063 0.937 16 C -0.001 4.001 17 N -0.933 5.933 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.267 1.267 22 C 0.136 3.864 23 C -0.138 4.138 24 C -0.119 4.119 25 C -0.124 4.124 26 C -0.123 4.123 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.416 0.584 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.065 0.935 41 H -0.004 1.004 42 H -0.004 1.004 43 H 0.264 0.736 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.087 0.913 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.044 0.956 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.219 23.009 -8.448 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.129 4.129 3 C -0.198 4.198 4 C -0.012 4.012 5 N -0.300 5.300 6 C 0.288 3.712 7 O -0.412 6.412 8 C 0.274 3.726 9 O -0.407 6.407 10 N -0.344 5.344 11 C 0.008 3.992 12 C -0.143 4.143 13 C -0.011 4.011 14 C -0.582 4.582 15 H 0.081 0.919 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.790 3.210 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.192 1.192 22 C 0.033 3.967 23 C -0.175 4.175 24 C -0.156 4.156 25 C -0.161 4.161 26 C -0.162 4.162 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.047 0.953 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.092 0.908 35 H 0.130 0.870 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.014 0.986 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.108 0.892 46 H 0.113 0.887 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.086 0.914 50 H 0.090 0.910 51 H 0.063 0.937 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.326 22.670 -8.606 31.641 hybrid contribution -1.474 -0.742 0.754 1.814 sum 18.852 21.929 -7.852 29.965 Atomic orbital electron populations 1.21786 0.95935 1.00400 1.01310 1.21620 0.95599 0.97697 0.97969 1.21748 1.01892 0.93760 1.02414 1.21988 1.01937 0.78194 0.99109 1.48045 1.17186 1.09861 1.54879 1.20004 0.83050 0.88447 0.79681 1.90741 1.49090 1.54228 1.47184 1.20414 0.82126 0.89822 0.80211 1.90721 1.49601 1.55623 1.44736 1.45898 1.23784 1.10032 1.54650 1.21409 0.97481 0.79480 1.00801 1.21631 0.94666 0.98349 0.99679 1.18913 0.95315 0.91393 0.95484 1.21643 1.08179 0.93174 1.35183 0.91862 1.25985 1.01321 0.95849 0.96751 1.70090 1.41144 0.99204 1.46853 0.85497 0.79244 0.77032 0.79253 1.19157 1.20971 1.19152 1.22101 0.91136 0.88971 0.94445 1.22952 0.93808 1.02030 0.98697 1.22579 0.98563 0.96651 0.97822 1.22399 0.94355 0.98242 1.01148 1.22515 0.96015 1.00222 0.97414 0.93251 0.92499 0.95328 0.90047 0.90749 0.91828 0.92649 0.90789 0.86999 0.74734 0.91951 0.91896 0.91634 0.91670 0.98595 0.98571 0.92748 0.90047 0.89231 0.88688 0.90947 0.89456 0.91438 0.91016 0.93713 0.91944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 7.87 71.98 0.57 -2.09 16 2 C -0.11 -1.52 2.66 -10.80 -0.03 -1.54 16 3 C -0.14 -1.32 9.19 71.98 0.66 -0.65 16 4 C 0.11 1.68 4.26 86.38 0.37 2.05 16 5 N -0.57 -11.77 2.33 -795.37 -1.86 -13.62 16 6 C 0.51 13.61 6.26 87.27 0.55 14.16 16 7 O -0.53 -15.84 13.93 -3.22 -0.04 -15.88 16 8 C 0.49 14.93 7.61 87.27 0.66 15.60 16 9 O -0.53 -17.29 11.24 -3.22 -0.04 -17.33 16 10 N -0.69 -21.08 5.55 -464.41 -2.58 -23.66 16 11 C 0.13 4.60 5.67 86.38 0.49 5.09 16 12 C -0.11 -4.15 5.27 30.59 0.16 -3.99 16 13 C 0.03 1.38 4.97 29.85 0.15 1.53 16 14 C -0.54 -30.63 9.11 25.60 0.23 -30.40 16 15 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 16 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 17 N -0.93 -56.84 13.29 21.45 0.28 -56.55 16 18 Si 0.97 44.16 29.54 68.60 2.03 46.19 16 19 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 22 C 0.14 2.63 2.77 45.72 0.13 2.76 16 23 C -0.14 -1.62 5.81 31.69 0.18 -1.44 16 24 C -0.12 -1.19 6.64 31.91 0.21 -0.98 16 25 C -0.12 -1.79 6.83 31.67 0.22 -1.57 16 26 C -0.12 -2.58 4.97 31.32 0.16 -2.42 16 27 H 0.05 1.06 7.93 -2.39 -0.02 1.04 16 28 H 0.06 0.96 8.14 -2.38 -0.02 0.95 16 29 H 0.03 0.69 5.97 -2.39 -0.01 0.67 16 30 H 0.08 1.04 6.53 -2.39 -0.02 1.03 16 31 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 1.35 7.49 -2.39 -0.02 1.33 16 35 H 0.11 1.18 4.88 -2.39 -0.01 1.17 16 36 H 0.42 11.66 7.96 -92.71 -0.74 10.92 16 37 H 0.06 2.28 8.14 -2.38 -0.02 2.26 16 38 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 42 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 44 H 0.08 1.95 6.51 -2.39 -0.02 1.93 16 45 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.09 0.91 4.12 -2.38 -0.01 0.90 16 47 H 0.07 0.66 6.61 -2.38 -0.02 0.64 16 48 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.04 1.06 7.82 -2.39 -0.02 1.04 16 52 H 0.06 1.61 6.90 -2.39 -0.02 1.59 16 Total: -1.00 -66.79 395.30 3.13 -63.66 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.16 Total: 20.71 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 5.17 Total: -3.51 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.15 Total: -93.84 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.08 Total: -33.21 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -66.79 3.13 -63.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343140667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.994 kcal (2) G-P(sol) polarization free energy of solvation -66.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds