Wall clock time and date at job start Tue Mar 31 2020 15:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46843 * 2 1 4 4 C 1.53000 * 109.47223 * 239.99749 * 2 1 3 5 5 O 1.45200 * 109.47150 * 119.99482 * 2 1 3 6 6 C 1.34634 * 116.99953 * 60.00408 * 5 2 1 7 7 O 1.21511 * 120.00141 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99992 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00053 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.01305 * 33.92902 * 9 8 6 11 11 C 1.52821 * 109.03162 * 275.00116 * 9 8 6 12 12 C 1.53322 * 108.10504 * 180.49306 * 11 9 8 13 13 C 1.52590 * 108.41880 * 64.10049 * 12 11 9 14 14 C 1.53010 * 111.04047 * 297.65554 * 13 12 11 15 15 H 1.09007 * 112.06087 * 286.78313 * 14 13 12 16 16 C 1.55330 * 106.43368 * 162.93914 * 14 13 12 17 17 N 1.47593 * 106.92758 * 268.45584 * 16 14 13 18 18 C 1.46907 * 111.00274 * 121.24684 * 17 16 14 19 19 C 1.50694 * 109.47088 * 184.15185 * 18 17 16 20 20 H 1.08004 * 120.00110 * 4.90021 * 19 18 17 21 21 C 1.37879 * 119.99993 * 184.90233 * 19 18 17 22 22 N 1.31516 * 119.99915 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00145 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47170 * 89.99727 * 23 21 19 25 25 H 1.48504 * 109.47203 * 209.99541 * 23 21 19 26 26 H 1.48493 * 109.47179 * 330.00124 * 23 21 19 27 27 C 1.48239 * 108.56540 * 358.98036 * 17 16 14 28 28 C 1.50750 * 109.03111 * 152.78014 * 9 8 6 29 29 H 1.08999 * 109.26724 * 294.39541 * 28 9 8 30 30 H 1.09000 * 109.47297 * 299.99838 * 1 2 3 31 31 H 1.08996 * 109.47383 * 60.00339 * 1 2 3 32 32 H 1.09003 * 109.46688 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47185 * 180.02562 * 3 2 1 34 34 H 1.09010 * 109.47232 * 299.99597 * 3 2 1 35 35 H 1.08993 * 109.47812 * 59.99671 * 3 2 1 36 36 H 1.08992 * 109.47078 * 299.99458 * 4 2 1 37 37 H 1.09001 * 109.46987 * 60.00417 * 4 2 1 38 38 H 1.09004 * 109.46766 * 179.97438 * 4 2 1 39 39 H 0.96999 * 120.00336 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.73745 * 300.14860 * 11 9 8 41 41 H 1.09007 * 109.73767 * 60.83830 * 11 9 8 42 42 H 1.09000 * 109.67719 * 183.83280 * 12 11 9 43 43 H 1.09004 * 109.67440 * 304.36592 * 12 11 9 44 44 H 1.08994 * 109.16494 * 177.25316 * 13 12 11 45 45 H 1.09002 * 109.16339 * 58.05394 * 13 12 11 46 46 H 1.09003 * 109.96765 * 27.81957 * 16 14 13 47 47 H 1.08992 * 109.97662 * 149.08514 * 16 14 13 48 48 H 1.08995 * 109.47283 * 304.15411 * 18 17 16 49 49 H 1.09001 * 109.46873 * 64.15282 * 18 17 16 50 50 H 0.97003 * 120.00481 * 180.02562 * 22 21 19 51 51 H 1.08995 * 110.51735 * 218.03249 * 27 17 16 52 52 H 1.09006 * 110.51441 * 95.30585 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6523 -1.9722 1.3384 7 8 0.9510 -2.5094 0.5042 8 7 2.0681 -2.6655 2.4168 9 6 1.6741 -4.0666 2.5834 10 1 1.6106 -4.5368 1.6020 11 6 0.3011 -4.1221 3.2523 12 6 -0.0844 -5.5956 3.4274 13 6 0.9108 -6.2438 4.3854 14 6 2.3285 -6.2093 3.8110 15 1 2.4575 -6.9213 2.9958 16 6 3.2913 -6.4728 5.0011 17 7 3.6558 -5.1558 5.5588 18 6 3.2768 -5.0606 6.9750 19 6 3.5703 -3.6719 7.4812 20 1 3.9212 -2.9114 6.7992 21 6 3.3909 -3.3721 8.8150 22 7 2.9641 -4.2982 9.6455 23 14 3.7540 -1.6505 9.4424 24 1 2.5269 -0.8196 9.3464 25 1 4.1935 -1.7224 10.8591 26 1 4.8300 -1.0409 8.6205 27 6 2.9871 -4.1027 4.7580 28 6 2.7221 -4.7781 3.4007 29 1 3.6557 -4.8100 2.8391 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6768 -1.7489 -1.2491 37 1 1.6767 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 2.6276 -2.2366 3.0830 40 1 0.3463 -3.6351 4.2264 41 1 -0.4351 -3.6211 2.6236 42 1 -1.0905 -5.6651 3.8410 43 1 -0.0480 -6.1017 2.4626 44 1 0.6194 -7.2800 4.5570 45 1 0.8958 -5.7070 5.3340 46 1 2.7893 -7.0725 5.7604 47 1 4.1850 -6.9885 4.6499 48 1 2.2121 -5.2685 7.0809 49 1 3.8481 -5.7865 7.5536 50 1 2.8375 -4.0873 10.5838 51 1 3.6440 -3.2417 4.6346 52 1 2.0489 -3.8047 5.2261 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359993941.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:22:50 Heat of formation + Delta-G solvation = -113.427436 kcal Electronic energy + Delta-G solvation = -29626.766597 eV Core-core repulsion = 25817.567948 eV Total energy + Delta-G solvation = -3809.198649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.06317 -41.18948 -38.48350 -36.92732 -35.54829 -34.88003 -34.52036 -31.99096 -31.24668 -28.51360 -28.32502 -28.27332 -27.95714 -25.30598 -24.01982 -23.05806 -22.41407 -21.68203 -20.83439 -19.94087 -19.06075 -18.24750 -17.66634 -17.13743 -16.99377 -16.84965 -16.40642 -15.96857 -15.60146 -15.35356 -15.25990 -15.10706 -14.52749 -14.32908 -14.32405 -13.96137 -13.85691 -13.48989 -13.28892 -13.21221 -12.95902 -12.91914 -12.86704 -12.83436 -12.69756 -12.59032 -12.51005 -12.37497 -12.30118 -12.23097 -12.05974 -11.73134 -11.40308 -11.36382 -11.25614 -11.23201 -11.08600 -10.99508 -10.63965 -10.12355 -8.93162 -8.21943 -6.31230 1.20570 1.39538 1.40650 1.51979 1.79677 2.39128 3.10448 3.12829 3.29461 3.57098 3.66190 3.78654 3.83079 3.84788 3.98203 4.05150 4.11762 4.18891 4.32660 4.41122 4.50651 4.57558 4.59876 4.64849 4.69174 4.73798 4.75202 4.79587 4.86003 4.89782 4.90494 4.92148 4.99243 5.07718 5.09428 5.14043 5.16579 5.21491 5.28283 5.31741 5.33905 5.35221 5.37681 5.42985 5.55284 5.61036 5.65099 6.00544 6.32679 6.42039 6.61581 6.85575 7.36345 7.38731 8.89879 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.003761 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.221568 B = 7442.500259 C = 9114.484900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.178 4.178 5 O -0.374 6.374 6 C 0.649 3.351 7 O -0.587 6.587 8 N -0.704 5.704 9 C 0.191 3.809 10 H 0.095 0.905 11 C -0.129 4.129 12 C -0.104 4.104 13 C -0.117 4.117 14 C -0.082 4.082 15 H 0.119 0.881 16 C 0.039 3.961 17 N -0.539 5.539 18 C 0.208 3.792 19 C -0.526 4.526 20 H 0.064 0.936 21 C 0.004 3.996 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.263 1.263 27 C 0.070 3.930 28 C -0.094 4.094 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.409 0.591 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.030 0.970 46 H 0.039 0.961 47 H 0.079 0.921 48 H -0.037 1.037 49 H -0.001 1.001 50 H 0.264 0.736 51 H 0.063 0.937 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 5.017 -21.657 22.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.235 4.235 5 O -0.289 6.289 6 C 0.403 3.597 7 O -0.478 6.478 8 N -0.362 5.362 9 C 0.087 3.913 10 H 0.113 0.887 11 C -0.167 4.167 12 C -0.142 4.142 13 C -0.154 4.154 14 C -0.101 4.101 15 H 0.137 0.863 16 C -0.090 4.090 17 N -0.264 5.264 18 C 0.082 3.918 19 C -0.564 4.564 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.574 5.574 23 Si 0.789 3.211 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.058 4.058 28 C -0.114 4.114 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.245 0.755 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.094 0.906 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.097 0.903 48 H -0.019 1.019 49 H 0.017 0.983 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.535 4.864 -21.943 22.929 hybrid contribution -0.458 0.691 1.613 1.813 sum -4.993 5.555 -20.331 21.659 Atomic orbital electron populations 1.22471 0.93979 1.03787 1.03417 1.22422 0.94624 0.92656 0.81618 1.21895 1.02391 0.90934 1.04209 1.22461 1.01553 1.02332 0.97153 1.86339 1.71696 1.23312 1.47577 1.18183 0.78625 0.80755 0.82136 1.90860 1.42011 1.70798 1.44172 1.45060 1.55050 1.12806 1.23316 1.20267 0.93117 0.78217 0.99649 0.88667 1.21972 0.96334 0.98202 1.00228 1.21420 0.98636 0.93899 1.00283 1.21593 0.94481 1.01282 0.98051 1.22334 0.94482 0.95723 0.97589 0.86309 1.23209 0.98226 0.91708 0.95807 1.63715 1.56747 1.02606 1.03291 1.19493 0.91498 0.96173 0.84655 1.21515 1.43948 0.96850 0.94075 0.91790 1.25875 0.94998 1.01458 0.97119 1.70083 1.47557 1.35301 1.04468 0.85457 0.78770 0.79379 0.77503 1.19907 1.20821 1.18769 1.22629 0.96460 0.95046 0.91687 1.21661 0.98783 0.95424 0.95511 0.89251 0.92456 0.88909 0.91706 0.91340 0.87728 0.91624 0.91678 0.88966 0.92108 0.75502 0.93077 0.91666 0.91095 0.89709 0.90581 0.95067 0.94214 0.90278 1.01940 0.98262 0.92742 0.91833 0.94960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 2 C 0.12 2.45 1.13 -10.80 -0.01 2.43 16 3 C -0.14 -1.94 8.85 71.98 0.64 -1.30 16 4 C -0.18 -3.30 8.37 71.98 0.60 -2.70 16 5 O -0.37 -9.64 9.94 -55.43 -0.55 -10.20 16 6 C 0.65 18.07 8.01 129.79 1.04 19.11 16 7 O -0.59 -17.77 11.51 19.81 0.23 -17.54 16 8 N -0.70 -18.59 4.97 -573.94 -2.85 -21.44 16 9 C 0.19 4.86 2.16 44.20 0.10 4.96 16 10 H 0.10 2.37 7.52 -2.39 -0.02 2.35 16 11 C -0.13 -3.39 5.35 30.64 0.16 -3.22 16 12 C -0.10 -2.40 5.93 30.57 0.18 -2.22 16 13 C -0.12 -3.14 4.62 30.46 0.14 -3.00 16 14 C -0.08 -2.13 3.60 -9.65 -0.03 -2.16 16 15 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 16 C 0.04 1.31 6.20 86.97 0.54 1.85 16 17 N -0.54 -22.85 5.27 -888.57 -4.69 -27.54 16 18 C 0.21 11.09 4.37 85.55 0.37 11.46 16 19 C -0.53 -29.59 8.57 25.60 0.22 -29.37 16 20 H 0.06 3.49 6.88 -2.91 -0.02 3.47 16 21 C 0.00 0.21 5.46 84.65 0.46 0.67 16 22 N -0.93 -56.37 13.29 21.45 0.28 -56.09 16 23 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 24 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 27 C 0.07 2.54 3.66 86.35 0.32 2.85 16 28 C -0.09 -2.57 2.49 -10.88 -0.03 -2.60 16 29 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16 33 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.41 10.70 7.37 -92.71 -0.68 10.01 16 40 H 0.05 1.57 6.80 -2.39 -0.02 1.55 16 41 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 1.09 6.52 -2.39 -0.02 1.08 16 46 H 0.04 1.45 7.18 -2.39 -0.02 1.43 16 47 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 48 H -0.04 -2.11 7.49 -2.39 -0.02 -2.13 16 49 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 50 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 51 H 0.06 2.33 7.16 -2.39 -0.02 2.31 16 52 H 0.03 1.32 5.71 -2.38 -0.01 1.31 16 Total: -1.00 -67.14 387.81 -0.04 -67.18 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.21 Total: 25.49 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.30 Total: -6.12 kcal Atomic # 7 Polarization: -97.81 SS G_CDS: -7.25 Total: -105.07 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.32 Total: -27.74 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -67.14 -0.04 -67.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359993941.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.252 kcal (2) G-P(sol) polarization free energy of solvation -67.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds