Wall clock time and date at job start Tue Mar 31 2020 13:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46463 * 305.00112 * 4 3 2 6 6 C 1.52998 * 109.46967 * 185.00386 * 4 3 2 7 7 N 1.46492 * 109.46717 * 64.99991 * 4 3 2 8 8 C 1.34784 * 119.99993 * 205.00201 * 7 4 3 9 9 O 1.21283 * 119.99808 * 0.02562 * 8 7 4 10 10 C 1.50701 * 120.00116 * 180.02562 * 8 7 4 11 11 H 1.08998 * 109.49673 * 59.93649 * 10 8 7 12 12 C 1.53040 * 109.49288 * 179.97438 * 10 8 7 13 13 C 1.53042 * 109.53532 * 181.31603 * 12 10 8 14 14 C 1.53188 * 109.31400 * 298.63487 * 13 12 10 15 15 N 1.46932 * 108.77594 * 54.63518 * 14 13 12 16 16 C 1.34770 * 120.63077 * 126.37430 * 15 14 13 17 17 O 1.21282 * 119.99823 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00284 * 359.97438 * 16 15 14 19 19 C 1.52997 * 109.47147 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47147 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00147 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00023 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47435 * 59.99913 * 24 22 20 26 26 H 1.48503 * 109.47140 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47252 * 299.99859 * 24 22 20 28 28 C 1.46932 * 118.73437 * 306.39286 * 15 14 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09004 * 109.46546 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47305 * 299.99210 * 6 4 3 38 38 H 1.08993 * 109.47729 * 60.00346 * 6 4 3 39 39 H 0.96999 * 120.00724 * 25.00859 * 7 4 3 40 40 H 1.08998 * 109.46349 * 301.33419 * 12 10 8 41 41 H 1.08999 * 109.46542 * 61.29955 * 12 10 8 42 42 H 1.09001 * 109.50126 * 58.58673 * 13 12 10 43 43 H 1.08996 * 109.50123 * 178.64869 * 13 12 10 44 44 H 1.09003 * 109.59351 * 174.41976 * 14 13 12 45 45 H 1.08999 * 109.58803 * 294.70522 * 14 13 12 46 46 H 1.08995 * 109.46976 * 300.00434 * 18 16 15 47 47 H 1.08995 * 109.46869 * 60.00538 * 18 16 15 48 48 H 1.09002 * 109.47442 * 300.00609 * 19 18 16 49 49 H 1.09000 * 109.47459 * 60.00182 * 19 18 16 50 50 H 0.96993 * 119.99834 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58783 * 293.81568 * 28 15 14 52 52 H 1.09005 * 109.58312 * 173.39492 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8796 0.1252 7 7 4.0578 0.8591 -1.2527 8 6 5.2798 0.2925 -1.3011 9 8 5.9754 0.2653 -0.3080 10 6 5.7817 -0.3073 -2.5893 11 1 5.8173 0.4630 -3.3597 12 6 7.1850 -0.8787 -2.3739 13 6 7.7089 -1.4588 -3.6896 14 6 6.7884 -2.5957 -4.1442 15 7 5.4108 -2.0897 -4.2140 16 6 4.6853 -2.2266 -5.3415 17 8 3.5493 -1.8041 -5.3866 18 6 5.2859 -2.9035 -6.5465 19 6 4.2607 -2.9271 -7.6820 20 6 4.8615 -3.6034 -8.8873 21 1 5.8733 -3.9793 -8.8472 22 6 4.1193 -3.7433 -10.0408 23 7 2.8871 -3.2861 -10.0894 24 14 4.8638 -4.5823 -11.5344 25 1 5.2449 -5.9737 -11.1821 26 1 3.8688 -4.6051 -12.6366 27 1 6.0698 -3.8346 -11.9724 28 6 4.8394 -1.4312 -3.0313 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.1700 2.8796 0.1242 37 1 3.7164 3.4692 -0.7164 38 1 3.7171 3.3137 1.0567 39 1 3.5014 0.8805 -2.0470 40 1 7.8520 -0.0858 -2.0355 41 1 7.1451 -1.6655 -1.6206 42 1 7.7259 -0.6782 -4.4502 43 1 8.7177 -1.8440 -3.5413 44 1 7.0992 -2.9463 -5.1285 45 1 6.8424 -3.4174 -3.4300 46 1 6.1711 -2.3547 -6.8680 47 1 5.5655 -3.9247 -6.2878 48 1 3.3752 -3.4755 -7.3608 49 1 3.9814 -1.9057 -7.9407 50 1 2.3651 -3.3842 -10.9010 51 1 4.7324 -2.1568 -2.2250 52 1 3.8642 -1.0132 -3.2813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360162040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:49 Heat of formation + Delta-G solvation = -112.759336 kcal Electronic energy + Delta-G solvation = -28312.458952 eV Core-core repulsion = 24503.289274 eV Total energy + Delta-G solvation = -3809.169678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64631 -39.45222 -37.39715 -36.59294 -33.80256 -33.55316 -32.88673 -31.92823 -31.01007 -30.24886 -27.02886 -26.33549 -25.03076 -24.20857 -22.40591 -21.79538 -21.35167 -20.83838 -20.04833 -18.59882 -17.40811 -16.91466 -16.57200 -15.89826 -15.84071 -15.24401 -15.04521 -14.87500 -14.50319 -14.45598 -14.37252 -13.94454 -13.91334 -13.40118 -13.31100 -13.13603 -12.95504 -12.63142 -12.54560 -12.39847 -12.16676 -12.11984 -11.81266 -11.63960 -11.29729 -11.25289 -11.08524 -11.02688 -10.96802 -10.92735 -10.92026 -10.74968 -10.60640 -9.97895 -9.96608 -9.63194 -9.31262 -9.20886 -9.02522 -8.49864 -8.32721 -5.97557 -4.02033 2.42478 2.91512 3.15727 3.24382 3.33340 3.38318 3.39994 4.29052 4.44571 4.47550 4.51229 4.62444 4.67080 4.71176 4.89115 4.99031 5.04178 5.08993 5.12839 5.19710 5.21146 5.28605 5.36732 5.37404 5.41331 5.48669 5.54901 5.56750 5.65446 5.68389 5.70669 5.77534 5.83759 5.87185 5.89103 5.92480 5.97009 6.03796 6.16789 6.18345 6.19452 6.30230 6.63631 6.87055 7.27967 7.68024 7.72311 7.83921 8.02964 8.05188 8.36397 8.67607 9.06066 9.61556 11.13361 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002615 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.945562 B =10703.420119 C =12097.522097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.128 4.128 4 C 0.140 3.860 5 H 0.087 0.913 6 C -0.164 4.164 7 N -0.725 5.725 8 C 0.525 3.475 9 O -0.540 6.540 10 C -0.124 4.124 11 H 0.101 0.899 12 C -0.096 4.096 13 C -0.136 4.136 14 C 0.106 3.894 15 N -0.623 5.623 16 C 0.514 3.486 17 O -0.534 6.534 18 C -0.128 4.128 19 C 0.038 3.962 20 C -0.528 4.528 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.124 3.876 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.403 0.597 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.080 0.920 48 H 0.023 0.977 49 H 0.023 0.977 50 H 0.261 0.739 51 H 0.066 0.934 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.898 8.992 21.976 24.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.166 4.166 4 C 0.035 3.965 5 H 0.105 0.895 6 C -0.222 4.222 7 N -0.377 5.377 8 C 0.311 3.689 9 O -0.417 6.417 10 C -0.146 4.146 11 H 0.119 0.881 12 C -0.134 4.134 13 C -0.175 4.175 14 C -0.017 4.017 15 N -0.359 5.359 16 C 0.305 3.695 17 O -0.409 6.409 18 C -0.168 4.168 19 C 0.000 4.000 20 C -0.566 4.566 21 H 0.073 0.927 22 C -0.143 4.143 23 N -0.528 5.528 24 Si 0.720 3.280 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.202 1.202 28 C 0.000 4.000 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.238 0.762 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.098 0.902 48 H 0.041 0.959 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.593 9.211 22.533 24.607 hybrid contribution 0.142 -0.352 -1.201 1.260 sum 3.735 8.859 21.332 23.398 Atomic orbital electron populations 1.21772 0.95636 1.01905 1.01726 1.21541 0.96017 0.96300 1.02521 1.21945 0.93628 0.97822 1.03170 1.20995 0.93633 0.94373 0.87457 0.89455 1.22177 1.02054 0.95966 1.01996 1.46201 1.17929 1.59783 1.13829 1.20531 0.81085 0.77213 0.90079 1.90682 1.56123 1.58243 1.36603 1.21776 0.97956 0.99337 0.95553 0.88069 1.21311 0.93681 1.01012 0.97442 1.21965 0.99163 0.98851 0.97472 1.21751 0.80911 0.95880 1.03174 1.48270 1.14718 1.59951 1.12986 1.21628 0.85807 0.78398 0.83674 1.90651 1.18557 1.48897 1.82804 1.21887 1.01910 0.99576 0.93420 1.18899 0.92966 0.98155 0.89963 1.21178 0.99646 1.38356 0.97420 0.92664 1.25020 0.94854 0.95693 0.98771 1.69984 1.08857 1.45974 1.28033 0.86656 0.78854 0.80041 0.82402 1.20235 1.21290 1.20245 1.21324 0.96886 0.93576 0.88233 0.92900 0.92604 0.92563 0.92010 0.91593 0.91193 0.90432 0.92092 0.92401 0.91709 0.76235 0.91051 0.91076 0.91186 0.90258 0.88727 0.91551 0.90179 0.90203 0.95855 0.95868 0.92886 0.91620 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.91 37.16 0.37 -0.74 16 2 C -0.13 -0.95 5.82 -26.73 -0.16 -1.11 16 3 C -0.13 -0.85 4.75 -26.73 -0.13 -0.97 16 4 C 0.14 1.14 2.57 -67.93 -0.17 0.97 16 5 H 0.09 0.85 7.58 -51.93 -0.39 0.45 16 6 C -0.16 -1.26 9.48 37.16 0.35 -0.91 16 7 N -0.73 -6.53 4.44 -53.81 -0.24 -6.77 16 8 C 0.53 5.85 7.12 -10.98 -0.08 5.77 16 9 O -0.54 -7.61 15.64 5.55 0.09 -7.52 16 10 C -0.12 -1.31 2.68 -91.66 -0.25 -1.56 16 11 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 12 C -0.10 -0.97 4.46 -26.69 -0.12 -1.09 16 13 C -0.14 -1.26 6.08 -26.61 -0.16 -1.43 16 14 C 0.11 1.16 6.34 -3.71 -0.02 1.13 16 15 N -0.62 -8.75 2.97 -172.77 -0.51 -9.26 16 16 C 0.51 9.64 7.70 -10.99 -0.08 9.55 16 17 O -0.53 -12.02 15.39 5.56 0.09 -11.94 16 18 C -0.13 -2.54 3.99 -27.88 -0.11 -2.65 16 19 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 20 C -0.53 -14.76 9.11 -34.44 -0.31 -15.07 16 21 H 0.06 1.45 7.74 -52.48 -0.41 1.04 16 22 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 23 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 24 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.12 1.50 5.57 -3.71 -0.02 1.48 16 29 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.57 7.75 -51.93 -0.40 0.16 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.40 3.24 8.15 -40.82 -0.33 2.90 16 40 H 0.07 0.73 8.07 -51.93 -0.42 0.31 16 41 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.44 7.69 -51.93 -0.40 1.05 16 47 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 48 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 49 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.09 1.23 6.61 -51.93 -0.34 0.89 16 LS Contribution 411.99 15.07 6.21 6.21 Total: -1.00 -34.23 411.99 -9.50 -43.73 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -9.73 Total: -0.30 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.11 Total: -4.16 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: -0.02 Total: -42.46 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: 0.17 Total: -19.46 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.23 -9.50 -43.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360162040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.026 kcal (2) G-P(sol) polarization free energy of solvation -34.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds