Wall clock time and date at job start Tue Mar 31 2020 13:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.46463 * 305.00112 * 4 3 2 6 6 C 1.52998 * 109.46967 * 185.00386 * 4 3 2 7 7 N 1.46492 * 109.46717 * 64.99991 * 4 3 2 8 8 C 1.34784 * 119.99993 * 205.00201 * 7 4 3 9 9 O 1.21283 * 119.99808 * 0.02562 * 8 7 4 10 10 C 1.50701 * 120.00116 * 180.02562 * 8 7 4 11 11 H 1.08998 * 109.49673 * 59.93649 * 10 8 7 12 12 C 1.53040 * 109.49288 * 179.97438 * 10 8 7 13 13 C 1.53042 * 109.53532 * 181.31603 * 12 10 8 14 14 C 1.53188 * 109.31400 * 298.63487 * 13 12 10 15 15 N 1.46932 * 108.77594 * 54.63518 * 14 13 12 16 16 C 1.34770 * 120.63077 * 126.37430 * 15 14 13 17 17 O 1.21282 * 119.99823 * 180.02562 * 16 15 14 18 18 C 1.50699 * 120.00284 * 359.97438 * 16 15 14 19 19 C 1.52997 * 109.47147 * 180.02562 * 18 16 15 20 20 C 1.50699 * 109.47147 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00147 * 179.97438 * 20 19 18 23 23 N 1.31520 * 120.00135 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00023 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47435 * 59.99913 * 24 22 20 26 26 H 1.48503 * 109.47140 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47252 * 299.99859 * 24 22 20 28 28 C 1.46932 * 118.73437 * 306.39286 * 15 14 13 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09004 * 109.46546 * 180.02562 * 6 4 3 37 37 H 1.09001 * 109.47305 * 299.99210 * 6 4 3 38 38 H 1.08993 * 109.47729 * 60.00346 * 6 4 3 39 39 H 0.96999 * 120.00724 * 25.00859 * 7 4 3 40 40 H 1.08998 * 109.46349 * 301.33419 * 12 10 8 41 41 H 1.08999 * 109.46542 * 61.29955 * 12 10 8 42 42 H 1.09001 * 109.50126 * 58.58673 * 13 12 10 43 43 H 1.08996 * 109.50123 * 178.64869 * 13 12 10 44 44 H 1.09003 * 109.59351 * 174.41976 * 14 13 12 45 45 H 1.08999 * 109.58803 * 294.70522 * 14 13 12 46 46 H 1.08995 * 109.46976 * 300.00434 * 18 16 15 47 47 H 1.08995 * 109.46869 * 60.00538 * 18 16 15 48 48 H 1.09002 * 109.47442 * 300.00609 * 19 18 16 49 49 H 1.09000 * 109.47459 * 60.00182 * 19 18 16 50 50 H 0.96993 * 119.99834 * 179.97438 * 23 22 20 51 51 H 1.08999 * 109.58783 * 293.81568 * 28 15 14 52 52 H 1.09005 * 109.58312 * 173.39492 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 1 3.9336 0.8530 0.8410 6 6 4.0800 2.8796 0.1252 7 7 4.0578 0.8591 -1.2527 8 6 5.2798 0.2925 -1.3011 9 8 5.9754 0.2653 -0.3080 10 6 5.7817 -0.3073 -2.5893 11 1 5.8173 0.4630 -3.3597 12 6 7.1850 -0.8787 -2.3739 13 6 7.7089 -1.4588 -3.6896 14 6 6.7884 -2.5957 -4.1442 15 7 5.4108 -2.0897 -4.2140 16 6 4.6853 -2.2266 -5.3415 17 8 3.5493 -1.8041 -5.3866 18 6 5.2859 -2.9035 -6.5465 19 6 4.2607 -2.9271 -7.6820 20 6 4.8615 -3.6034 -8.8873 21 1 5.8733 -3.9793 -8.8472 22 6 4.1193 -3.7433 -10.0408 23 7 2.8871 -3.2861 -10.0894 24 14 4.8638 -4.5823 -11.5344 25 1 5.2449 -5.9737 -11.1821 26 1 3.8688 -4.6051 -12.6366 27 1 6.0698 -3.8346 -11.9724 28 6 4.8394 -1.4312 -3.0313 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 5.1700 2.8796 0.1242 37 1 3.7164 3.4692 -0.7164 38 1 3.7171 3.3137 1.0567 39 1 3.5014 0.8805 -2.0470 40 1 7.8520 -0.0858 -2.0355 41 1 7.1451 -1.6655 -1.6206 42 1 7.7259 -0.6782 -4.4502 43 1 8.7177 -1.8440 -3.5413 44 1 7.0992 -2.9463 -5.1285 45 1 6.8424 -3.4174 -3.4300 46 1 6.1711 -2.3547 -6.8680 47 1 5.5655 -3.9247 -6.2878 48 1 3.3752 -3.4755 -7.3608 49 1 3.9814 -1.9057 -7.9407 50 1 2.3651 -3.3842 -10.9010 51 1 4.7324 -2.1568 -2.2250 52 1 3.8642 -1.0132 -3.2813 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360162040.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:48 Heat of formation + Delta-G solvation = -133.772438 kcal Electronic energy + Delta-G solvation = -28313.370148 eV Core-core repulsion = 24503.289274 eV Total energy + Delta-G solvation = -3810.080875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65709 -40.64850 -38.41114 -37.53532 -35.58993 -34.53861 -34.07521 -32.99596 -32.57030 -31.16306 -28.09107 -27.62808 -26.17813 -25.42140 -23.38693 -23.09424 -22.31027 -21.62425 -21.02471 -19.84411 -18.89664 -18.12498 -17.65249 -17.27744 -16.97713 -16.58546 -16.39976 -16.04022 -15.70512 -15.34022 -15.19830 -14.96396 -14.76435 -14.62019 -14.37827 -14.17113 -14.12061 -13.72232 -13.63525 -13.50856 -13.26464 -13.15355 -12.95248 -12.77100 -12.54943 -12.50903 -12.41363 -12.02146 -11.96055 -11.89837 -11.88768 -11.67800 -11.61890 -11.55159 -11.49505 -11.29634 -10.95335 -10.59837 -10.54052 -10.11541 -9.66872 -8.16262 -6.29958 1.43438 1.47571 1.47920 1.55237 1.70059 1.97551 2.22859 2.44696 3.16848 3.54281 3.58114 3.72719 3.78818 3.92520 4.00237 4.05658 4.06145 4.19337 4.22267 4.35695 4.44997 4.46020 4.51739 4.54089 4.58201 4.61669 4.72891 4.73309 4.78311 4.80764 4.88378 4.92352 4.96874 5.01845 5.03550 5.13302 5.18013 5.24811 5.25836 5.28521 5.39245 5.43147 5.49505 5.55665 5.57999 5.65284 5.87124 6.19502 6.37870 6.46810 6.88371 7.17149 7.24577 7.40239 8.96140 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014641 B = 0.002615 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.945562 B =10703.420119 C =12097.522097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.119 4.119 4 C 0.139 3.861 5 H 0.072 0.928 6 C -0.158 4.158 7 N -0.717 5.717 8 C 0.526 3.474 9 O -0.570 6.570 10 C -0.115 4.115 11 H 0.103 0.897 12 C -0.093 4.093 13 C -0.127 4.127 14 C 0.096 3.904 15 N -0.610 5.610 16 C 0.513 3.487 17 O -0.584 6.584 18 C -0.116 4.116 19 C 0.044 3.956 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.006 4.006 23 N -0.937 5.937 24 Si 0.972 3.028 25 H -0.263 1.263 26 H -0.289 1.289 27 H -0.262 1.262 28 C 0.125 3.875 29 H 0.064 0.936 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.408 0.592 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.100 0.900 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.102 0.898 48 H -0.019 1.019 49 H -0.017 1.017 50 H 0.262 0.738 51 H 0.075 0.925 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.024 8.679 22.406 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.157 4.157 4 C 0.035 3.965 5 H 0.091 0.909 6 C -0.217 4.217 7 N -0.369 5.369 8 C 0.313 3.687 9 O -0.449 6.449 10 C -0.137 4.137 11 H 0.121 0.879 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.025 4.025 15 N -0.344 5.344 16 C 0.304 3.696 17 O -0.464 6.464 18 C -0.156 4.156 19 C 0.006 3.994 20 C -0.580 4.580 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.577 5.577 24 Si 0.795 3.205 25 H -0.187 1.187 26 H -0.215 1.215 27 H -0.187 1.187 28 C 0.002 3.998 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.244 0.756 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.124 0.876 44 H 0.118 0.882 45 H 0.104 0.896 46 H 0.122 0.878 47 H 0.120 0.880 48 H 0.000 1.000 49 H 0.001 0.999 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.762 8.899 23.002 25.327 hybrid contribution -0.543 -0.233 -1.242 1.376 sum 5.220 8.666 21.759 23.996 Atomic orbital electron populations 1.21764 0.95238 1.01734 1.02222 1.21524 0.96356 0.96829 1.01669 1.21894 0.92220 0.97327 1.04245 1.21071 0.94666 0.94408 0.86385 0.90945 1.22128 1.00695 0.95612 1.03224 1.46226 1.17315 1.58856 1.14474 1.20573 0.81343 0.77103 0.89727 1.90670 1.57048 1.59671 1.37502 1.21696 0.98093 0.98683 0.95265 0.87894 1.21299 0.92979 1.00964 0.97895 1.21930 0.99942 0.98051 0.96622 1.22100 0.79013 0.97152 1.04278 1.48195 1.15639 1.58668 1.11891 1.21371 0.85336 0.78217 0.84684 1.90635 1.20710 1.51249 1.83821 1.21640 1.00462 1.01581 0.91870 1.18679 0.93374 0.94892 0.92428 1.21686 1.00527 1.37960 0.97858 0.90588 1.26112 0.95184 0.96394 1.02665 1.70167 1.10783 1.47711 1.29085 0.85408 0.78097 0.79331 0.77628 1.18726 1.21465 1.18670 1.21385 0.96734 0.94225 0.87501 0.91705 0.93165 0.92734 0.92286 0.93052 0.90624 0.88770 0.94071 0.91737 0.90022 0.75619 0.90962 0.91261 0.91521 0.87588 0.88183 0.89570 0.87789 0.87982 1.00022 0.99878 0.92896 0.90725 0.90085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.40 16 2 C -0.13 -1.86 5.82 30.59 0.18 -1.69 16 3 C -0.12 -1.44 4.75 30.59 0.15 -1.30 16 4 C 0.14 2.18 2.57 44.99 0.12 2.30 16 5 H 0.07 1.39 7.58 -2.39 -0.02 1.38 16 6 C -0.16 -2.28 9.48 71.98 0.68 -1.60 16 7 N -0.72 -12.75 4.44 -442.53 -1.96 -14.72 16 8 C 0.53 11.51 7.12 87.66 0.62 12.13 16 9 O -0.57 -15.86 15.64 -3.04 -0.05 -15.91 16 10 C -0.12 -2.33 2.68 -11.46 -0.03 -2.36 16 11 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 12 C -0.09 -1.69 4.46 30.62 0.14 -1.55 16 13 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 14 C 0.10 1.83 6.34 86.36 0.55 2.38 16 15 N -0.61 -16.45 2.97 -818.90 -2.43 -18.88 16 16 C 0.51 19.35 7.70 87.66 0.67 20.03 16 17 O -0.58 -27.50 15.39 -3.04 -0.05 -27.55 16 18 C -0.12 -4.53 3.99 29.85 0.12 -4.42 16 19 C 0.04 2.40 4.26 29.85 0.13 2.53 16 20 C -0.54 -30.38 9.11 25.60 0.23 -30.15 16 21 H 0.08 3.85 7.74 -2.91 -0.02 3.82 16 22 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 23 N -0.94 -58.95 13.29 21.45 0.28 -58.67 16 24 Si 0.97 43.74 29.54 68.60 2.03 45.76 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 28 C 0.12 2.97 5.57 86.36 0.48 3.45 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.05 0.90 7.75 -2.39 -0.02 0.88 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.41 6.53 8.15 -92.71 -0.76 5.77 16 40 H 0.07 1.34 8.07 -2.39 -0.02 1.32 16 41 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.10 1.84 5.93 -2.39 -0.01 1.83 16 45 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.10 3.55 7.69 -2.39 -0.02 3.54 16 47 H 0.10 3.53 7.94 -2.39 -0.02 3.51 16 48 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 49 H -0.02 -1.07 8.10 -2.39 -0.02 -1.09 16 50 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 51 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.08 2.17 6.61 -2.38 -0.02 2.16 16 Total: -1.00 -77.26 411.99 3.34 -73.93 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.12 Total: 19.36 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: 5.40 Total: -3.33 kcal Atomic # 7 Polarization: -88.16 SS G_CDS: -4.11 Total: -92.27 kcal Atomic # 8 Polarization: -43.36 SS G_CDS: -0.09 Total: -43.46 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -77.26 3.34 -73.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360162040.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.845 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds