Wall clock time and date at job start Tue Mar 31 2020 14:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52998 * 109.47126 * 2 1
4 4 C 1.53001 * 109.47055 * 239.99763 * 2 1 3
5 5 O 1.45204 * 109.47048 * 119.99947 * 2 1 3
6 6 C 1.34634 * 117.00028 * 60.00423 * 5 2 1
7 7 O 1.21507 * 120.00081 * 359.97438 * 6 5 2
8 8 N 1.34779 * 119.99875 * 179.97438 * 6 5 2
9 9 C 1.46892 * 120.68905 * 359.97438 * 8 6 5
10 10 C 1.53151 * 109.09843 * 124.68440 * 9 8 6
11 11 C 1.53185 * 109.34626 * 56.45568 * 10 9 8
12 12 C 1.52621 * 109.36647 * 300.92274 * 11 10 9
13 13 C 1.53426 * 113.74340 * 188.81817 * 12 11 10
14 14 C 1.54025 * 86.18750 * 137.91950 * 13 12 11
15 15 N 1.47445 * 113.68894 * 285.95492 * 12 11 10
16 16 C 1.46901 * 110.99994 * 108.25069 * 15 12 11
17 17 C 1.52997 * 109.47280 * 169.99882 * 16 15 12
18 18 C 1.50705 * 109.47442 * 180.02562 * 17 16 15
19 19 H 1.07999 * 119.99696 * 0.02562 * 18 17 16
20 20 C 1.37877 * 119.99961 * 180.02562 * 18 17 16
21 21 N 1.31508 * 120.00115 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99867 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47001 * 359.97438 * 22 20 18
24 24 H 1.48493 * 109.47487 * 119.99595 * 22 20 18
25 25 H 1.48496 * 109.47318 * 240.00270 * 22 20 18
26 26 C 1.47111 * 120.68772 * 180.02562 * 8 6 5
27 27 H 1.09003 * 109.47030 * 300.00004 * 1 2 3
28 28 H 1.08999 * 109.47282 * 60.00155 * 1 2 3
29 29 H 1.09002 * 109.47101 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47336 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46913 * 300.00070 * 3 2 1
32 32 H 1.08996 * 109.47480 * 59.99846 * 3 2 1
33 33 H 1.08993 * 109.47075 * 299.99800 * 4 2 1
34 34 H 1.08998 * 109.46735 * 60.00390 * 4 2 1
35 35 H 1.09001 * 109.46938 * 180.02562 * 4 2 1
36 36 H 1.09000 * 109.53256 * 4.79995 * 9 8 6
37 37 H 1.08997 * 109.59719 * 244.60980 * 9 8 6
38 38 H 1.09000 * 109.48798 * 296.49120 * 10 9 8
39 39 H 1.08998 * 109.48960 * 176.41906 * 10 9 8
40 40 H 1.09002 * 109.49400 * 60.89844 * 11 10 9
41 41 H 1.08996 * 109.49099 * 180.95283 * 11 10 9
42 42 H 1.09000 * 113.75781 * 252.24326 * 13 12 11
43 43 H 1.09003 * 113.75580 * 23.49208 * 13 12 11
44 44 H 1.09001 * 113.73981 * 90.98816 * 14 13 12
45 45 H 1.09003 * 113.74771 * 222.19276 * 14 13 12
46 46 H 1.08998 * 109.47385 * 290.00142 * 16 15 12
47 47 H 1.09004 * 109.46958 * 49.99836 * 16 15 12
48 48 H 1.08998 * 109.47124 * 300.00419 * 17 16 15
49 49 H 1.09004 * 109.47162 * 60.00079 * 17 16 15
50 50 H 0.97005 * 120.00195 * 179.97438 * 21 20 18
51 51 H 1.09002 * 109.64081 * 351.04455 * 26 8 6
52 52 H 1.09000 * 109.63948 * 111.45269 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2492
5 8 2.0139 -0.6845 1.1856
6 6 1.6522 -1.9723 1.3383
7 8 0.9509 -2.5095 0.5040
8 7 2.0681 -2.6657 2.4167
9 6 2.9167 -2.0315 3.4342
10 6 2.2481 -2.1750 4.8046
11 6 1.9927 -3.6579 5.0919
12 6 1.0965 -4.2377 4.0011
13 6 0.6008 -5.6587 4.2994
14 6 -0.7637 -5.1843 3.7652
15 7 -0.3125 -3.8160 4.1057
16 6 -0.6585 -2.8668 3.0393
17 6 -2.1723 -2.6451 3.0252
18 6 -2.5274 -1.6718 1.9308
19 1 -1.7510 -1.2537 1.3072
20 6 -3.8433 -1.3154 1.7255
21 7 -4.7886 -1.8242 2.4851
22 14 -4.2835 -0.1096 0.3684
23 1 -3.0475 0.3142 -0.3373
24 1 -5.2048 -0.7635 -0.5953
25 1 -4.9479 1.0798 0.9593
26 6 1.6824 -4.0737 2.5985
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 3.1299 1.4425 -0.0005
31 1 1.6766 1.9563 -0.8900
32 1 1.6766 1.9564 0.8899
33 1 1.6766 -1.7489 -1.2491
34 1 1.6766 -0.2074 -2.1392
35 1 3.1299 -0.7217 -1.2490
36 1 3.0408 -0.9747 3.1982
37 1 3.8919 -2.5180 3.4518
38 1 1.3007 -1.6359 4.8052
39 1 2.9019 -1.7629 5.5732
40 1 2.9415 -4.1942 5.1064
41 1 1.5015 -3.7615 6.0594
42 1 1.0708 -6.4259 3.6841
43 1 0.5962 -5.9085 5.3604
44 1 -0.8977 -5.3490 2.6960
45 1 -1.6111 -5.5292 4.3577
46 1 -0.1539 -1.9177 3.2197
47 1 -0.3414 -3.2697 2.0773
48 1 -2.6769 -3.5942 2.8448
49 1 -2.4894 -2.2422 3.9872
50 1 -5.7144 -1.5731 2.3409
51 1 0.9343 -4.3476 1.8546
52 1 2.5596 -4.7111 2.4876
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000377785201.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:34:56
Heat of formation + Delta-G solvation = -43.852897 kcal
Electronic energy + Delta-G solvation = -31404.003689 eV
Core-core repulsion = 27597.822018 eV
Total energy + Delta-G solvation = -3806.181671 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-41.26480 -39.96315 -37.18610 -35.91086 -33.75347 -33.44290 -32.27718 -30.99480
-29.11924 -27.32594 -27.26280 -26.94202 -25.72281 -23.78875 -23.36804 -22.12233
-21.17774 -20.07145 -19.06191 -18.21986 -17.73778 -16.58156 -16.10995 -15.73128
-15.36936 -15.03264 -14.99151 -14.61180 -14.23159 -14.10972 -14.04073 -13.59555
-13.37590 -13.19174 -13.05994 -12.60989 -12.38062 -12.21056 -12.05113 -11.93325
-11.75604 -11.66748 -11.47512 -11.34613 -11.15783 -11.09645 -11.02266 -10.93337
-10.83446 -10.68718 -10.50469 -10.29222 -10.14872 -9.96592 -9.79549 -9.61561
-9.11891 -8.89900 -8.55676 -8.23463 -7.95373 -5.89166 -3.89009 2.33551
3.18752 3.35505 3.42869 3.46779 3.97370 4.32250 4.55168 4.71260
4.76609 4.93148 4.96714 5.00425 5.08708 5.13017 5.15139 5.33150
5.45589 5.47290 5.58265 5.60345 5.61472 5.69474 5.71805 5.79239
5.83146 5.84937 5.86829 5.96475 5.99880 6.06080 6.07637 6.17130
6.20570 6.28612 6.30047 6.38907 6.47890 6.49446 6.58445 6.68697
6.73905 6.94972 7.03927 7.30297 7.55206 7.63615 7.87369 7.99693
8.17720 8.58174 8.65682 9.19149 9.73520 11.22857
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.009136 B = 0.007022 C = 0.004470
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3063.971539 B = 3986.563689 C = 6262.815123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.137 3.863
3 C -0.138 4.138
4 C -0.180 4.180
5 O -0.365 6.365
6 C 0.657 3.343
7 O -0.553 6.553
8 N -0.593 5.593
9 C 0.115 3.885
10 C -0.136 4.136
11 C -0.087 4.087
12 C 0.036 3.964
13 C -0.134 4.134
14 C 0.006 3.994
15 N -0.464 5.464
16 C 0.021 3.979
17 C 0.031 3.969
18 C -0.511 4.511
19 H 0.064 0.936
20 C 0.056 3.944
21 N -0.897 5.897
22 Si 0.882 3.118
23 H -0.268 1.268
24 H -0.286 1.286
25 H -0.286 1.286
26 C 0.128 3.872
27 H 0.065 0.935
28 H 0.062 0.938
29 H 0.101 0.899
30 H 0.061 0.939
31 H 0.077 0.923
32 H 0.067 0.933
33 H 0.088 0.912
34 H 0.067 0.933
35 H 0.053 0.947
36 H 0.088 0.912
37 H 0.064 0.936
38 H 0.077 0.923
39 H 0.071 0.929
40 H 0.062 0.938
41 H 0.073 0.927
42 H 0.066 0.934
43 H 0.090 0.910
44 H 0.068 0.932
45 H 0.084 0.916
46 H 0.054 0.946
47 H 0.053 0.947
48 H 0.011 0.989
49 H 0.016 0.984
50 H 0.257 0.743
51 H 0.103 0.897
52 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.888 -1.553 0.638 18.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.242 4.242
2 C 0.100 3.900
3 C -0.196 4.196
4 C -0.238 4.238
5 O -0.280 6.280
6 C 0.412 3.588
7 O -0.441 6.441
8 N -0.333 5.333
9 C -0.008 4.008
10 C -0.174 4.174
11 C -0.125 4.125
12 C -0.056 4.056
13 C -0.172 4.172
14 C -0.123 4.123
15 N -0.187 5.187
16 C -0.106 4.106
17 C -0.007 4.007
18 C -0.550 4.550
19 H 0.082 0.918
20 C -0.144 4.144
21 N -0.537 5.537
22 Si 0.710 3.290
23 H -0.193 1.193
24 H -0.212 1.212
25 H -0.213 1.213
26 C 0.005 3.995
27 H 0.084 0.916
28 H 0.081 0.919
29 H 0.120 0.880
30 H 0.080 0.920
31 H 0.096 0.904
32 H 0.086 0.914
33 H 0.107 0.893
34 H 0.086 0.914
35 H 0.072 0.928
36 H 0.107 0.893
37 H 0.082 0.918
38 H 0.095 0.905
39 H 0.090 0.910
40 H 0.081 0.919
41 H 0.092 0.908
42 H 0.085 0.915
43 H 0.108 0.892
44 H 0.086 0.914
45 H 0.103 0.897
46 H 0.072 0.928
47 H 0.071 0.929
48 H 0.030 0.970
49 H 0.035 0.965
50 H 0.067 0.933
51 H 0.121 0.879
52 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 18.231 -1.275 0.907 18.298
hybrid contribution -0.326 0.523 -1.535 1.654
sum 17.905 -0.752 -0.628 17.932
Atomic orbital electron populations
1.22651 0.92583 1.06511 1.02479 1.22073 0.95188 0.90985 0.81745
1.21837 1.01485 0.93097 1.03139 1.22494 1.00741 1.03769 0.96760
1.86226 1.71498 1.23692 1.46546 1.17820 0.78426 0.80547 0.82007
1.90922 1.39820 1.70231 1.43119 1.46782 1.53384 1.11779 1.21392
1.21641 0.92627 0.98787 0.87751 1.21921 1.02015 0.97618 0.95883
1.21235 0.98050 0.95062 0.98132 1.22759 0.92903 0.95742 0.94175
1.23358 0.96857 0.94920 1.02065 1.23756 0.97190 0.91266 1.00049
1.68571 1.02450 1.05199 1.42472 1.23051 1.00846 0.94782 0.91904
1.19004 0.87932 0.96649 0.97070 1.21406 0.92547 1.25183 1.15836
0.91754 1.24968 0.96690 0.96505 0.96209 1.69992 1.00142 1.44349
1.39250 0.86688 0.78621 0.81269 0.82449 1.19264 1.21223 1.21268
1.21731 1.00422 0.79694 0.97634 0.91557 0.91922 0.88011 0.91974
0.90401 0.91434 0.89335 0.91408 0.92751 0.89322 0.91754 0.90465
0.91010 0.91916 0.90782 0.91496 0.89186 0.91421 0.89709 0.92765
0.92936 0.97022 0.96529 0.93350 0.87896 0.91134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.42 7.50 37.15 0.28 -3.14 16
2 C 0.14 2.09 1.13 -90.62 -0.10 1.98 16
3 C -0.14 -1.63 8.85 37.16 0.33 -1.30 16
4 C -0.18 -2.51 8.37 37.16 0.31 -2.20 16
5 O -0.36 -6.02 8.52 -40.31 -0.34 -6.36 16
6 C 0.66 11.64 6.11 54.06 0.33 11.97 16
7 O -0.55 -11.25 9.90 -19.28 -0.19 -11.44 16
8 N -0.59 -8.97 2.01 -178.65 -0.36 -9.33 16
9 C 0.11 1.39 6.39 -3.75 -0.02 1.36 16
10 C -0.14 -1.65 6.09 -26.56 -0.16 -1.81 16
11 C -0.09 -1.03 5.32 -26.83 -0.14 -1.17 16
12 C 0.04 0.51 0.88 -131.39 -0.12 0.40 16
13 C -0.13 -1.68 7.44 -26.01 -0.19 -1.87 16
14 C 0.01 0.10 6.79 -2.71 -0.02 0.09 16
15 N -0.46 -8.57 6.06 -223.06 -1.35 -9.92 16
16 C 0.02 0.47 3.15 -3.83 -0.01 0.46 16
17 C 0.03 0.84 5.04 -27.88 -0.14 0.70 16
18 C -0.51 -14.89 9.11 -34.44 -0.31 -15.20 16
19 H 0.06 1.82 5.19 -52.49 -0.27 1.55 16
20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
21 N -0.90 -27.91 13.29 55.43 0.74 -27.18 16
22 Si 0.88 22.33 29.54 -169.99 -5.02 17.31 16
23 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16
24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16
25 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16
26 C 0.13 1.85 4.86 -3.76 -0.02 1.83 16
27 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16
28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16
29 H 0.10 2.24 4.54 -51.93 -0.24 2.00 16
30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16
31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
33 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16
34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16
35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
36 H 0.09 1.08 6.91 -51.93 -0.36 0.72 16
37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.08 1.20 7.28 -51.93 -0.38 0.82 16
39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
42 H 0.07 0.71 8.09 -51.93 -0.42 0.29 16
43 H 0.09 1.03 8.09 -51.93 -0.42 0.61 16
44 H 0.07 1.19 7.40 -51.93 -0.38 0.81 16
45 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16
46 H 0.05 1.26 6.20 -51.93 -0.32 0.94 16
47 H 0.05 1.20 3.43 -51.93 -0.18 1.02 16
48 H 0.01 0.33 7.55 -51.93 -0.39 -0.06 16
49 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
50 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16
51 H 0.10 1.77 4.96 -51.93 -0.26 1.51 16
52 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16
LS Contribution 380.86 15.07 5.74 5.74
Total: -1.00 -33.00 380.86 -9.86 -42.85
By element:
Atomic # 1 Polarization: 13.63 SS G_CDS: -8.97 Total: 4.66 kcal
Atomic # 6 Polarization: -6.24 SS G_CDS: -0.09 Total: -6.33 kcal
Atomic # 7 Polarization: -45.45 SS G_CDS: -0.98 Total: -46.43 kcal
Atomic # 8 Polarization: -17.26 SS G_CDS: -0.53 Total: -17.80 kcal
Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal
Total LS contribution 5.74 Total: 5.74 kcal
Total: -33.00 -9.86 -42.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000377785201.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -1.002 kcal
(2) G-P(sol) polarization free energy of solvation -32.996 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.997 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.856 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.853 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds