Wall clock time and date at job start Tue Mar 31 2020 14:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 C 1.52998 * 109.47126 * 2 1
4 4 C 1.53001 * 109.47055 * 239.99763 * 2 1 3
5 5 O 1.45204 * 109.47048 * 119.99947 * 2 1 3
6 6 C 1.34634 * 117.00028 * 60.00423 * 5 2 1
7 7 O 1.21507 * 120.00081 * 359.97438 * 6 5 2
8 8 N 1.34779 * 119.99875 * 179.97438 * 6 5 2
9 9 C 1.46892 * 120.68905 * 359.97438 * 8 6 5
10 10 C 1.53151 * 109.09843 * 124.68440 * 9 8 6
11 11 C 1.53185 * 109.34626 * 56.45568 * 10 9 8
12 12 C 1.52621 * 109.36647 * 300.92274 * 11 10 9
13 13 C 1.53426 * 113.74340 * 188.81817 * 12 11 10
14 14 C 1.54025 * 86.18750 * 137.91950 * 13 12 11
15 15 N 1.47445 * 113.68894 * 285.95492 * 12 11 10
16 16 C 1.46901 * 110.99994 * 108.25069 * 15 12 11
17 17 C 1.52997 * 109.47280 * 169.99882 * 16 15 12
18 18 C 1.50705 * 109.47442 * 180.02562 * 17 16 15
19 19 H 1.07999 * 119.99696 * 0.02562 * 18 17 16
20 20 C 1.37877 * 119.99961 * 180.02562 * 18 17 16
21 21 N 1.31508 * 120.00115 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 119.99867 * 180.02562 * 20 18 17
23 23 H 1.48504 * 109.47001 * 359.97438 * 22 20 18
24 24 H 1.48493 * 109.47487 * 119.99595 * 22 20 18
25 25 H 1.48496 * 109.47318 * 240.00270 * 22 20 18
26 26 C 1.47111 * 120.68772 * 180.02562 * 8 6 5
27 27 H 1.09003 * 109.47030 * 300.00004 * 1 2 3
28 28 H 1.08999 * 109.47282 * 60.00155 * 1 2 3
29 29 H 1.09002 * 109.47101 * 180.02562 * 1 2 3
30 30 H 1.09002 * 109.47336 * 180.02562 * 3 2 1
31 31 H 1.08999 * 109.46913 * 300.00070 * 3 2 1
32 32 H 1.08996 * 109.47480 * 59.99846 * 3 2 1
33 33 H 1.08993 * 109.47075 * 299.99800 * 4 2 1
34 34 H 1.08998 * 109.46735 * 60.00390 * 4 2 1
35 35 H 1.09001 * 109.46938 * 180.02562 * 4 2 1
36 36 H 1.09000 * 109.53256 * 4.79995 * 9 8 6
37 37 H 1.08997 * 109.59719 * 244.60980 * 9 8 6
38 38 H 1.09000 * 109.48798 * 296.49120 * 10 9 8
39 39 H 1.08998 * 109.48960 * 176.41906 * 10 9 8
40 40 H 1.09002 * 109.49400 * 60.89844 * 11 10 9
41 41 H 1.08996 * 109.49099 * 180.95283 * 11 10 9
42 42 H 1.09000 * 113.75781 * 252.24326 * 13 12 11
43 43 H 1.09003 * 113.75580 * 23.49208 * 13 12 11
44 44 H 1.09001 * 113.73981 * 90.98816 * 14 13 12
45 45 H 1.09003 * 113.74771 * 222.19276 * 14 13 12
46 46 H 1.08998 * 109.47385 * 290.00142 * 16 15 12
47 47 H 1.09004 * 109.46958 * 49.99836 * 16 15 12
48 48 H 1.08998 * 109.47124 * 300.00419 * 17 16 15
49 49 H 1.09004 * 109.47162 * 60.00079 * 17 16 15
50 50 H 0.97005 * 120.00195 * 179.97438 * 21 20 18
51 51 H 1.09002 * 109.64081 * 351.04455 * 26 8 6
52 52 H 1.09000 * 109.63948 * 111.45269 * 26 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2492
5 8 2.0139 -0.6845 1.1856
6 6 1.6522 -1.9723 1.3383
7 8 0.9509 -2.5095 0.5040
8 7 2.0681 -2.6657 2.4167
9 6 2.9167 -2.0315 3.4342
10 6 2.2481 -2.1750 4.8046
11 6 1.9927 -3.6579 5.0919
12 6 1.0965 -4.2377 4.0011
13 6 0.6008 -5.6587 4.2994
14 6 -0.7637 -5.1843 3.7652
15 7 -0.3125 -3.8160 4.1057
16 6 -0.6585 -2.8668 3.0393
17 6 -2.1723 -2.6451 3.0252
18 6 -2.5274 -1.6718 1.9308
19 1 -1.7510 -1.2537 1.3072
20 6 -3.8433 -1.3154 1.7255
21 7 -4.7886 -1.8242 2.4851
22 14 -4.2835 -0.1096 0.3684
23 1 -3.0475 0.3142 -0.3373
24 1 -5.2048 -0.7635 -0.5953
25 1 -4.9479 1.0798 0.9593
26 6 1.6824 -4.0737 2.5985
27 1 -0.3633 0.5138 0.8900
28 1 -0.3634 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 3.1299 1.4425 -0.0005
31 1 1.6766 1.9563 -0.8900
32 1 1.6766 1.9564 0.8899
33 1 1.6766 -1.7489 -1.2491
34 1 1.6766 -0.2074 -2.1392
35 1 3.1299 -0.7217 -1.2490
36 1 3.0408 -0.9747 3.1982
37 1 3.8919 -2.5180 3.4518
38 1 1.3007 -1.6359 4.8052
39 1 2.9019 -1.7629 5.5732
40 1 2.9415 -4.1942 5.1064
41 1 1.5015 -3.7615 6.0594
42 1 1.0708 -6.4259 3.6841
43 1 0.5962 -5.9085 5.3604
44 1 -0.8977 -5.3490 2.6960
45 1 -1.6111 -5.5292 4.3577
46 1 -0.1539 -1.9177 3.2197
47 1 -0.3414 -3.2697 2.0773
48 1 -2.6769 -3.5942 2.8448
49 1 -2.4894 -2.2422 3.9872
50 1 -5.7144 -1.5731 2.3409
51 1 0.9343 -4.3476 1.8546
52 1 2.5596 -4.7111 2.4876
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000377785201.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:34:56
Heat of formation + Delta-G solvation = -65.991005 kcal
Electronic energy + Delta-G solvation = -31404.963669 eV
Core-core repulsion = 27597.822018 eV
Total energy + Delta-G solvation = -3807.141651 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-42.53439 -41.25216 -38.41695 -37.18527 -35.58595 -34.96944 -33.58037 -32.77244
-30.31798 -29.08744 -28.35612 -28.28116 -26.84383 -25.67580 -24.66236 -23.37185
-22.54391 -21.71303 -20.30880 -19.49772 -18.95320 -18.49901 -17.61759 -17.04742
-16.64675 -16.59183 -16.49173 -16.13308 -15.63685 -15.43609 -15.25524 -15.07870
-14.61344 -14.41877 -14.30443 -14.22091 -13.75932 -13.49959 -13.32230 -13.18438
-13.09315 -12.98935 -12.88479 -12.84971 -12.74896 -12.55884 -12.48019 -12.37365
-12.19614 -12.03494 -11.91963 -11.80971 -11.71958 -11.38132 -11.21724 -11.16717
-10.96146 -10.84484 -10.60232 -9.80709 -9.37922 -8.21936 -6.30632 1.14499
1.30367 1.31492 1.45392 1.86954 2.36056 2.84344 3.08038 3.11191
3.54375 3.64628 3.78044 3.81790 3.92358 3.96362 4.09442 4.11088
4.16226 4.32524 4.41868 4.48407 4.51983 4.54888 4.60925 4.66803
4.71322 4.75130 4.77368 4.81388 4.83482 4.86639 4.87731 4.90387
4.98149 5.02416 5.10111 5.12714 5.20562 5.30498 5.34297 5.38945
5.42978 5.45771 5.53532 5.56790 5.59385 5.76820 5.81032 6.17770
6.32205 6.40695 6.85935 7.35839 7.37200 8.91066
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.009136 B = 0.007022 C = 0.004470
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3063.971539 B = 3986.563689 C = 6262.815123
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.181 4.181
2 C 0.130 3.870
3 C -0.132 4.132
4 C -0.173 4.173
5 O -0.365 6.365
6 C 0.646 3.354
7 O -0.588 6.588
8 N -0.593 5.593
9 C 0.112 3.888
10 C -0.132 4.132
11 C -0.083 4.083
12 C 0.037 3.963
13 C -0.104 4.104
14 C -0.008 4.008
15 N -0.488 5.488
16 C 0.057 3.943
17 C 0.040 3.960
18 C -0.530 4.530
19 H 0.068 0.932
20 C 0.001 3.999
21 N -0.935 5.935
22 Si 0.950 3.050
23 H -0.253 1.253
24 H -0.280 1.280
25 H -0.277 1.277
26 C 0.127 3.873
27 H 0.042 0.958
28 H 0.078 0.922
29 H 0.061 0.939
30 H 0.083 0.917
31 H 0.098 0.902
32 H 0.061 0.939
33 H 0.058 0.942
34 H 0.086 0.914
35 H 0.074 0.926
36 H 0.084 0.916
37 H 0.104 0.896
38 H 0.031 0.969
39 H 0.104 0.896
40 H 0.104 0.896
41 H 0.071 0.929
42 H 0.097 0.903
43 H 0.110 0.890
44 H 0.049 0.951
45 H 0.074 0.926
46 H 0.037 0.963
47 H 0.046 0.954
48 H -0.017 1.017
49 H -0.021 1.021
50 H 0.261 0.739
51 H 0.068 0.932
52 H 0.111 0.889
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.440 -1.254 0.517 22.481
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.094 3.906
3 C -0.189 4.189
4 C -0.230 4.230
5 O -0.280 6.280
6 C 0.402 3.598
7 O -0.478 6.478
8 N -0.333 5.333
9 C -0.010 4.010
10 C -0.170 4.170
11 C -0.121 4.121
12 C -0.054 4.054
13 C -0.142 4.142
14 C -0.137 4.137
15 N -0.210 5.210
16 C -0.071 4.071
17 C 0.003 3.997
18 C -0.569 4.569
19 H 0.086 0.914
20 C -0.196 4.196
21 N -0.576 5.576
22 Si 0.774 3.226
23 H -0.177 1.177
24 H -0.205 1.205
25 H -0.202 1.202
26 C 0.004 3.996
27 H 0.062 0.938
28 H 0.096 0.904
29 H 0.080 0.920
30 H 0.102 0.898
31 H 0.117 0.883
32 H 0.080 0.920
33 H 0.077 0.923
34 H 0.105 0.895
35 H 0.093 0.907
36 H 0.102 0.898
37 H 0.122 0.878
38 H 0.050 0.950
39 H 0.123 0.877
40 H 0.122 0.878
41 H 0.090 0.910
42 H 0.116 0.884
43 H 0.129 0.871
44 H 0.067 0.933
45 H 0.092 0.908
46 H 0.055 0.945
47 H 0.064 0.936
48 H 0.001 0.999
49 H -0.003 1.003
50 H 0.070 0.930
51 H 0.086 0.914
52 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 21.817 -0.976 0.815 21.854
hybrid contribution -1.473 0.393 -1.445 2.101
sum 20.343 -0.582 -0.630 20.362
Atomic orbital electron populations
1.22557 0.95606 1.03654 1.02042 1.22318 0.92965 0.93221 0.82110
1.21852 1.02814 0.90284 1.03913 1.22410 1.01881 1.01961 0.96740
1.86237 1.71297 1.23181 1.47256 1.18148 0.78308 0.80866 0.82507
1.90907 1.41357 1.70924 1.44655 1.47004 1.53125 1.12002 1.21167
1.21899 0.93566 0.98964 0.86530 1.21895 1.00471 0.97668 0.97014
1.21297 0.99173 0.94932 0.96655 1.22973 0.90645 0.96642 0.95161
1.23267 0.92809 0.94624 1.03518 1.23797 0.99825 0.90953 0.99115
1.68529 1.06351 1.05328 1.40807 1.22453 0.96445 0.95171 0.93054
1.18837 0.91648 0.94588 0.94658 1.21789 0.93142 1.25614 1.16328
0.91378 1.25904 0.96504 0.98419 0.98792 1.70131 1.00625 1.45809
1.41070 0.85611 0.78854 0.78830 0.79272 1.17670 1.20533 1.20216
1.21814 1.01174 0.80032 0.96562 0.93837 0.90361 0.91974 0.89812
0.88335 0.91984 0.92309 0.89549 0.90726 0.89754 0.87840 0.95023
0.87747 0.87775 0.91010 0.88418 0.87147 0.93286 0.90758 0.94456
0.93616 0.99905 1.00281 0.93042 0.91358 0.87097
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -6.87 7.50 71.98 0.54 -6.33 16
2 C 0.13 3.90 1.13 -10.80 -0.01 3.89 16
3 C -0.13 -2.81 8.85 71.98 0.64 -2.18 16
4 C -0.17 -4.63 8.37 71.98 0.60 -4.02 16
5 O -0.36 -12.03 8.52 -55.44 -0.47 -12.50 16
6 C 0.65 23.35 6.11 129.79 0.79 24.15 16
7 O -0.59 -25.14 9.90 19.82 0.20 -24.94 16
8 N -0.59 -17.47 2.01 -949.53 -1.91 -19.38 16
9 C 0.11 2.41 6.39 86.36 0.55 2.97 16
10 C -0.13 -2.91 6.09 30.71 0.19 -2.73 16
11 C -0.08 -1.68 5.32 30.53 0.16 -1.52 16
12 C 0.04 0.99 0.88 3.37 0.00 0.99 16
13 C -0.10 -2.36 7.44 31.09 0.23 -2.13 16
14 C -0.01 -0.27 6.79 86.39 0.59 0.32 16
15 N -0.49 -18.64 6.06 -859.62 -5.21 -23.85 16
16 C 0.06 2.69 3.15 86.30 0.27 2.96 16
17 C 0.04 2.37 5.04 29.85 0.15 2.53 16
18 C -0.53 -32.81 9.11 25.60 0.23 -32.57 16
19 H 0.07 4.10 5.19 -2.91 -0.02 4.09 16
20 C 0.00 0.05 5.46 84.66 0.46 0.51 16
21 N -0.94 -60.82 13.29 21.45 0.28 -60.53 16
22 Si 0.95 47.22 29.54 68.60 2.03 49.25 16
23 H -0.25 -11.84 7.11 99.48 0.71 -11.13 16
24 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16
25 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
26 C 0.13 3.49 4.86 86.23 0.42 3.91 16
27 H 0.04 1.78 8.03 -2.39 -0.02 1.76 16
28 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16
29 H 0.06 2.88 4.54 -2.39 -0.01 2.87 16
30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16
31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16
32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.06 1.96 5.88 -2.39 -0.01 1.94 16
34 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16
36 H 0.08 1.91 6.91 -2.39 -0.02 1.89 16
37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16
38 H 0.03 0.99 7.28 -2.39 -0.02 0.97 16
39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16
40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16
41 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
42 H 0.10 1.70 8.09 -2.39 -0.02 1.68 16
43 H 0.11 2.13 8.09 -2.39 -0.02 2.11 16
44 H 0.05 1.86 7.40 -2.39 -0.02 1.84 16
45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16
46 H 0.04 1.86 6.20 -2.39 -0.01 1.85 16
47 H 0.05 2.25 3.43 -2.38 -0.01 2.24 16
48 H -0.02 -1.11 7.55 -2.39 -0.02 -1.13 16
49 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16
50 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16
51 H 0.07 2.40 4.96 -2.39 -0.01 2.39 16
52 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16
Total: -1.00 -79.81 380.86 1.63 -78.18
By element:
Atomic # 1 Polarization: 22.15 SS G_CDS: 0.90 Total: 23.04 kcal
Atomic # 6 Polarization: -15.08 SS G_CDS: 5.82 Total: -9.26 kcal
Atomic # 7 Polarization: -96.93 SS G_CDS: -6.84 Total: -103.76 kcal
Atomic # 8 Polarization: -37.17 SS G_CDS: -0.28 Total: -37.44 kcal
Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal
Total: -79.81 1.63 -78.18 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000377785201.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 12.192 kcal
(2) G-P(sol) polarization free energy of solvation -79.808 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.617 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.183 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.991 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds