Wall clock time and date at job start Tue Mar 31 2020 13:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.53000 * 109.47155 * 120.00024 * 2 1 3 5 5 H 1.09006 * 109.46958 * 53.19861 * 4 2 1 6 6 N 1.46897 * 109.46965 * 173.19752 * 4 2 1 7 7 C 1.46904 * 111.00078 * 275.00084 * 6 4 2 8 8 C 1.53183 * 109.54135 * 274.82629 * 7 6 4 9 9 C 1.53106 * 109.15148 * 183.24357 * 8 7 6 10 10 O 1.42897 * 109.48924 * 57.47548 * 9 8 7 11 11 C 1.42911 * 114.09601 * 298.88462 * 10 9 8 12 12 C 1.53090 * 109.41402 * 61.16015 * 11 10 9 13 13 C 1.50698 * 109.47181 * 293.20231 * 4 2 1 14 14 O 1.21281 * 119.99921 * 249.25553 * 13 4 2 15 15 N 1.34770 * 120.00447 * 69.52897 * 13 4 2 16 16 C 1.46499 * 120.00367 * 183.69907 * 15 13 4 17 17 C 1.53002 * 109.47152 * 185.12279 * 16 15 13 18 18 C 1.50702 * 115.54620 * 185.35327 * 17 16 15 19 19 H 1.07999 * 119.99741 * 143.59610 * 18 17 16 20 20 C 1.37878 * 120.00406 * 323.58713 * 18 17 16 21 21 N 1.31515 * 120.00021 * 171.88364 * 20 18 17 22 22 Si 1.86803 * 119.99555 * 351.88926 * 20 18 17 23 23 H 1.48491 * 109.47303 * 90.74214 * 22 20 18 24 24 H 1.48506 * 109.46608 * 210.74135 * 22 20 18 25 25 H 1.48498 * 109.47442 * 330.73394 * 22 20 18 26 26 C 1.52995 * 117.49922 * 39.68222 * 17 16 15 27 27 C 1.53000 * 117.50196 * 331.02223 * 17 16 15 28 28 H 1.08999 * 109.47302 * 300.00907 * 1 2 3 29 29 H 1.09007 * 109.47369 * 60.00650 * 1 2 3 30 30 H 1.09002 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47329 * 240.00331 * 2 1 3 32 32 H 1.08998 * 109.47024 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47436 * 300.00362 * 3 2 1 34 34 H 1.09010 * 109.46995 * 60.00077 * 3 2 1 35 35 H 1.00894 * 111.00344 * 38.96094 * 6 4 2 36 36 H 1.08992 * 109.54168 * 35.00295 * 7 6 4 37 37 H 1.09003 * 109.52015 * 303.05540 * 8 7 6 38 38 H 1.08990 * 109.52312 * 63.24908 * 8 7 6 39 39 H 1.08998 * 109.40524 * 297.48948 * 9 8 7 40 40 H 1.09005 * 109.48522 * 177.50671 * 9 8 7 41 41 H 1.09001 * 109.47780 * 301.17783 * 11 10 9 42 42 H 1.09006 * 109.48683 * 181.14882 * 11 10 9 43 43 H 1.08998 * 109.51959 * 182.48205 * 12 11 10 44 44 H 1.09006 * 109.57093 * 62.32582 * 12 11 10 45 45 H 0.97002 * 119.99619 * 3.69824 * 15 13 4 46 46 H 1.08998 * 109.46879 * 305.12164 * 16 15 13 47 47 H 1.08993 * 109.47181 * 65.12013 * 16 15 13 48 48 H 0.97001 * 119.99557 * 180.02562 * 21 20 18 49 49 H 1.08995 * 117.49837 * 0.02562 * 26 17 16 50 50 H 1.09005 * 117.49690 * 145.01662 * 26 17 16 51 51 H 1.08993 * 117.50134 * 214.98175 * 27 17 16 52 52 H 1.09001 * 117.49405 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5807 -1.7078 1.3121 6 7 3.4998 -0.8649 1.1700 7 6 3.8701 -2.0626 0.4042 8 6 3.8710 -3.2829 1.3301 9 6 4.3361 -4.5107 0.5426 10 8 5.6325 -4.2628 -0.0051 11 6 5.6805 -3.1625 -0.9157 12 6 5.2716 -1.8801 -0.1863 13 6 1.6797 0.0796 2.4739 14 8 2.5489 0.6315 3.1149 15 7 0.3923 0.1779 2.8601 16 6 0.0325 1.0218 4.0023 17 6 -1.4578 0.8585 4.3078 18 6 -2.0038 1.7629 5.3824 19 1 -3.0024 2.1648 5.2940 20 6 -1.2288 2.0772 6.4786 21 7 -1.6386 2.9880 7.3343 22 14 0.4033 1.2093 6.7482 23 1 1.4885 1.9806 6.0907 24 1 0.6773 1.1119 8.2045 25 1 0.3412 -0.1545 6.1640 26 6 -2.0513 -0.5474 4.1986 27 6 -2.3838 0.5083 3.1413 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 3.9236 -0.0384 0.7760 36 1 3.1523 -2.2167 -0.4014 37 1 4.5511 -3.1072 2.1636 38 1 2.8637 -3.4524 1.7102 39 1 3.6323 -4.7107 -0.2653 40 1 4.3812 -5.3734 1.2073 41 1 4.9943 -3.3449 -1.7427 42 1 6.6942 -3.0538 -1.3016 43 1 5.2651 -1.0474 -0.8896 44 1 5.9808 -1.6741 0.6155 45 1 -0.2962 -0.3101 2.3818 46 1 0.6167 0.7233 4.8728 47 1 0.2425 2.0645 3.7641 48 1 -1.0931 3.2093 8.1052 49 1 -1.3800 -1.3560 3.9096 50 1 -2.8371 -0.8181 4.9039 51 1 -3.3881 0.9317 3.1513 52 1 -1.9313 0.3947 2.1561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000437831454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:23 Heat of formation + Delta-G solvation = -45.240581 kcal Electronic energy + Delta-G solvation = -29655.325831 eV Core-core repulsion = 25849.083986 eV Total energy + Delta-G solvation = -3806.241845 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.45437 -39.46794 -37.64828 -36.57688 -34.78503 -33.15872 -32.22198 -31.46756 -31.04442 -28.17418 -27.20460 -26.52234 -24.73950 -23.97720 -23.36630 -21.59811 -21.41886 -20.31383 -19.76271 -19.12036 -17.49743 -16.71527 -16.39353 -16.17249 -16.12779 -15.67493 -15.48688 -15.15623 -14.81073 -14.40329 -14.33532 -14.02269 -13.84780 -13.58040 -13.16569 -13.03563 -12.80367 -12.70775 -12.65129 -12.36343 -12.19573 -11.98782 -11.92873 -11.60603 -11.43931 -11.16811 -11.11207 -10.89065 -10.87220 -10.68665 -10.65098 -10.49728 -10.05758 -9.94693 -9.62603 -9.52964 -9.26212 -9.02311 -8.54119 -8.51003 -8.14743 -6.22746 -4.20121 2.99102 3.27849 3.34006 3.41144 3.44511 3.56649 4.02471 4.32483 4.34383 4.49517 4.58557 4.64242 4.66173 4.67232 4.73215 4.87132 4.89356 5.04104 5.10467 5.14604 5.23966 5.28129 5.29650 5.34914 5.41093 5.47597 5.52555 5.59609 5.65749 5.68704 5.71397 5.81049 5.82620 5.85074 5.97060 6.03687 6.04645 6.14735 6.19551 6.38231 6.48441 6.66632 6.74456 6.83553 6.86377 6.98163 7.06351 7.18204 7.61819 7.92659 8.38199 8.64936 8.80615 9.39507 10.88897 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.003391 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.783694 B = 8254.441265 C = 8728.717515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C -0.152 4.152 4 C 0.073 3.927 5 H 0.097 0.903 6 N -0.660 5.660 7 C 0.087 3.913 8 C -0.147 4.147 9 C 0.062 3.938 10 O -0.383 6.383 11 C 0.065 3.935 12 C -0.159 4.159 13 C 0.514 3.486 14 O -0.525 6.525 15 N -0.727 5.727 16 C 0.130 3.870 17 C 0.006 3.994 18 C -0.486 4.486 19 H 0.082 0.918 20 C 0.079 3.921 21 N -0.887 5.887 22 Si 0.887 3.113 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.263 1.263 26 C -0.210 4.210 27 C -0.195 4.195 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.350 0.650 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.048 0.952 40 H 0.096 0.904 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.072 0.928 44 H 0.084 0.916 45 H 0.397 0.603 46 H 0.069 0.931 47 H 0.071 0.929 48 H 0.268 0.732 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.087 0.913 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.763 -11.966 -19.943 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.138 4.138 3 C -0.210 4.210 4 C -0.041 4.041 5 H 0.115 0.885 6 N -0.292 5.292 7 C -0.022 4.022 8 C -0.186 4.186 9 C -0.015 4.015 10 O -0.301 6.301 11 C -0.012 4.012 12 C -0.197 4.197 13 C 0.299 3.701 14 O -0.400 6.400 15 N -0.383 5.383 16 C 0.008 3.992 17 C 0.004 3.996 18 C -0.523 4.523 19 H 0.100 0.900 20 C -0.126 4.126 21 N -0.523 5.523 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.225 1.225 25 H -0.189 1.189 26 C -0.248 4.248 27 C -0.232 4.232 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.172 0.828 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.067 0.933 42 H 0.113 0.887 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.236 0.764 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.078 0.922 49 H 0.086 0.914 50 H 0.107 0.893 51 H 0.106 0.894 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.659 -11.827 -18.617 24.496 hybrid contribution -0.088 -0.177 -0.950 0.970 sum 10.571 -12.003 -19.567 25.272 Atomic orbital electron populations 1.22187 0.94259 1.02340 1.03735 1.21705 0.97278 0.97393 0.97413 1.21893 1.00890 0.95343 1.02836 1.21656 0.89827 0.99519 0.93051 0.88490 1.60163 1.06823 1.05720 1.56524 1.21551 0.95609 0.91207 0.93859 1.22270 1.02798 0.93945 0.99541 1.22614 0.84558 0.97585 0.96783 1.87942 1.30317 1.50078 1.61775 1.22530 1.02068 0.85477 0.91138 1.22390 0.97349 0.98680 1.01246 1.20303 0.82639 0.81517 0.85668 1.90692 1.47971 1.46492 1.54869 1.46618 1.08129 1.49676 1.33919 1.21706 0.95951 0.94122 0.87434 1.19558 0.88615 0.94575 0.96812 1.20290 1.02397 1.27611 1.02017 0.89981 1.25001 0.97931 0.93948 0.95679 1.69883 1.38911 1.29667 1.13791 0.86986 0.84019 0.81216 0.75903 1.19839 1.22470 1.18920 1.23200 1.04737 0.93874 1.03028 1.22881 1.01536 1.05961 0.92825 0.90641 0.91817 0.92301 0.90590 0.92589 0.92098 0.91637 0.82784 0.93606 0.89919 0.90987 0.93389 0.88621 0.93301 0.88681 0.90923 0.89759 0.76428 0.91351 0.91079 0.92166 0.91424 0.89306 0.89434 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 8.38 37.16 0.31 -1.32 16 2 C -0.12 -1.17 2.75 -90.62 -0.25 -1.42 16 3 C -0.15 -1.67 8.67 37.16 0.32 -1.35 16 4 C 0.07 0.90 2.07 -68.87 -0.14 0.76 16 5 H 0.10 1.08 7.16 -51.93 -0.37 0.71 16 6 N -0.66 -7.89 5.57 -100.76 -0.56 -8.45 16 7 C 0.09 0.82 2.36 -67.53 -0.16 0.66 16 8 C -0.15 -1.44 5.62 -26.58 -0.15 -1.59 16 9 C 0.06 0.52 6.84 37.21 0.25 0.78 16 10 O -0.38 -3.80 10.77 -35.23 -0.38 -4.18 16 11 C 0.07 0.49 6.84 37.20 0.25 0.75 16 12 C -0.16 -1.29 5.41 -26.59 -0.14 -1.43 16 13 C 0.51 8.91 5.45 -10.99 -0.06 8.85 16 14 O -0.53 -11.39 16.44 5.56 0.09 -11.30 16 15 N -0.73 -12.81 3.84 -60.30 -0.23 -13.04 16 16 C 0.13 2.88 4.28 -4.04 -0.02 2.86 16 17 C 0.01 0.13 1.89 -155.66 -0.29 -0.17 16 18 C -0.49 -13.29 9.60 -34.44 -0.33 -13.62 16 19 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 20 C 0.08 2.24 5.45 -17.82 -0.10 2.14 16 21 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 22 Si 0.89 22.71 24.07 -169.99 -4.09 18.62 16 23 H -0.27 -7.11 7.10 56.52 0.40 -6.71 16 24 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 25 H -0.26 -6.56 6.40 56.52 0.36 -6.20 16 26 C -0.21 -4.15 9.49 -26.70 -0.25 -4.40 16 27 C -0.19 -3.61 9.45 -26.70 -0.25 -3.86 16 28 H 0.07 0.90 4.15 -51.93 -0.22 0.68 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.63 7.37 -51.93 -0.38 0.25 16 32 H 0.06 0.58 6.51 -51.93 -0.34 0.24 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.92 7.03 -51.92 -0.36 0.55 16 35 H 0.35 4.06 6.30 -39.29 -0.25 3.81 16 36 H 0.05 0.39 7.10 -51.93 -0.37 0.02 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.70 7.49 -51.93 -0.39 0.31 16 39 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.40 5.96 3.69 -40.82 -0.15 5.81 16 46 H 0.07 1.69 2.43 -51.93 -0.13 1.56 16 47 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.07 1.20 7.46 -51.93 -0.39 0.82 16 50 H 0.09 1.80 8.14 -51.93 -0.42 1.37 16 51 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 52 H 0.07 1.11 5.48 -51.93 -0.28 0.82 16 LS Contribution 384.17 15.07 5.79 5.79 Total: -1.00 -32.26 384.17 -8.34 -40.60 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -8.72 Total: 10.15 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -1.01 Total: -12.38 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.02 Total: -47.29 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.29 Total: -15.49 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.09 Total: 18.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.26 -8.34 -40.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437831454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.645 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds