Wall clock time and date at job start Tue Mar 31 2020 13:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47084 * 2 1 4 4 C 1.53000 * 109.47155 * 120.00024 * 2 1 3 5 5 H 1.09006 * 109.46958 * 53.19861 * 4 2 1 6 6 N 1.46897 * 109.46965 * 173.19752 * 4 2 1 7 7 C 1.46904 * 111.00078 * 275.00084 * 6 4 2 8 8 C 1.53183 * 109.54135 * 274.82629 * 7 6 4 9 9 C 1.53106 * 109.15148 * 183.24357 * 8 7 6 10 10 O 1.42897 * 109.48924 * 57.47548 * 9 8 7 11 11 C 1.42911 * 114.09601 * 298.88462 * 10 9 8 12 12 C 1.53090 * 109.41402 * 61.16015 * 11 10 9 13 13 C 1.50698 * 109.47181 * 293.20231 * 4 2 1 14 14 O 1.21281 * 119.99921 * 249.25553 * 13 4 2 15 15 N 1.34770 * 120.00447 * 69.52897 * 13 4 2 16 16 C 1.46499 * 120.00367 * 183.69907 * 15 13 4 17 17 C 1.53002 * 109.47152 * 185.12279 * 16 15 13 18 18 C 1.50702 * 115.54620 * 185.35327 * 17 16 15 19 19 H 1.07999 * 119.99741 * 143.59610 * 18 17 16 20 20 C 1.37878 * 120.00406 * 323.58713 * 18 17 16 21 21 N 1.31515 * 120.00021 * 171.88364 * 20 18 17 22 22 Si 1.86803 * 119.99555 * 351.88926 * 20 18 17 23 23 H 1.48491 * 109.47303 * 90.74214 * 22 20 18 24 24 H 1.48506 * 109.46608 * 210.74135 * 22 20 18 25 25 H 1.48498 * 109.47442 * 330.73394 * 22 20 18 26 26 C 1.52995 * 117.49922 * 39.68222 * 17 16 15 27 27 C 1.53000 * 117.50196 * 331.02223 * 17 16 15 28 28 H 1.08999 * 109.47302 * 300.00907 * 1 2 3 29 29 H 1.09007 * 109.47369 * 60.00650 * 1 2 3 30 30 H 1.09002 * 109.47197 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47329 * 240.00331 * 2 1 3 32 32 H 1.08998 * 109.47024 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47436 * 300.00362 * 3 2 1 34 34 H 1.09010 * 109.46995 * 60.00077 * 3 2 1 35 35 H 1.00894 * 111.00344 * 38.96094 * 6 4 2 36 36 H 1.08992 * 109.54168 * 35.00295 * 7 6 4 37 37 H 1.09003 * 109.52015 * 303.05540 * 8 7 6 38 38 H 1.08990 * 109.52312 * 63.24908 * 8 7 6 39 39 H 1.08998 * 109.40524 * 297.48948 * 9 8 7 40 40 H 1.09005 * 109.48522 * 177.50671 * 9 8 7 41 41 H 1.09001 * 109.47780 * 301.17783 * 11 10 9 42 42 H 1.09006 * 109.48683 * 181.14882 * 11 10 9 43 43 H 1.08998 * 109.51959 * 182.48205 * 12 11 10 44 44 H 1.09006 * 109.57093 * 62.32582 * 12 11 10 45 45 H 0.97002 * 119.99619 * 3.69824 * 15 13 4 46 46 H 1.08998 * 109.46879 * 305.12164 * 16 15 13 47 47 H 1.08993 * 109.47181 * 65.12013 * 16 15 13 48 48 H 0.97001 * 119.99557 * 180.02562 * 21 20 18 49 49 H 1.08995 * 117.49837 * 0.02562 * 26 17 16 50 50 H 1.09005 * 117.49690 * 145.01662 * 26 17 16 51 51 H 1.08993 * 117.50134 * 214.98175 * 27 17 16 52 52 H 1.09001 * 117.49405 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.5807 -1.7078 1.3121 6 7 3.4998 -0.8649 1.1700 7 6 3.8701 -2.0626 0.4042 8 6 3.8710 -3.2829 1.3301 9 6 4.3361 -4.5107 0.5426 10 8 5.6325 -4.2628 -0.0051 11 6 5.6805 -3.1625 -0.9157 12 6 5.2716 -1.8801 -0.1863 13 6 1.6797 0.0796 2.4739 14 8 2.5489 0.6315 3.1149 15 7 0.3923 0.1779 2.8601 16 6 0.0325 1.0218 4.0023 17 6 -1.4578 0.8585 4.3078 18 6 -2.0038 1.7629 5.3824 19 1 -3.0024 2.1648 5.2940 20 6 -1.2288 2.0772 6.4786 21 7 -1.6386 2.9880 7.3343 22 14 0.4033 1.2093 6.7482 23 1 1.4885 1.9806 6.0907 24 1 0.6773 1.1119 8.2045 25 1 0.3412 -0.1545 6.1640 26 6 -2.0513 -0.5474 4.1986 27 6 -2.3838 0.5083 3.1413 28 1 -0.3634 0.5140 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9564 0.8901 35 1 3.9236 -0.0384 0.7760 36 1 3.1523 -2.2167 -0.4014 37 1 4.5511 -3.1072 2.1636 38 1 2.8637 -3.4524 1.7102 39 1 3.6323 -4.7107 -0.2653 40 1 4.3812 -5.3734 1.2073 41 1 4.9943 -3.3449 -1.7427 42 1 6.6942 -3.0538 -1.3016 43 1 5.2651 -1.0474 -0.8896 44 1 5.9808 -1.6741 0.6155 45 1 -0.2962 -0.3101 2.3818 46 1 0.6167 0.7233 4.8728 47 1 0.2425 2.0645 3.7641 48 1 -1.0931 3.2093 8.1052 49 1 -1.3800 -1.3560 3.9096 50 1 -2.8371 -0.8181 4.9039 51 1 -3.3881 0.9317 3.1513 52 1 -1.9313 0.3947 2.1561 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000437831454.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:22 Heat of formation + Delta-G solvation = -68.700195 kcal Electronic energy + Delta-G solvation = -29656.343117 eV Core-core repulsion = 25849.083986 eV Total energy + Delta-G solvation = -3807.259131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61241 -40.32583 -39.08954 -37.76930 -35.66895 -34.74256 -34.19805 -32.08473 -31.84419 -29.70266 -28.21441 -27.80109 -26.30715 -24.63275 -24.12554 -23.16064 -22.48674 -21.21903 -21.04399 -20.81156 -18.79915 -18.14597 -17.69240 -17.13920 -17.03107 -16.90778 -16.52515 -16.12300 -15.91179 -15.67577 -15.56439 -15.35352 -14.94029 -14.69797 -14.61624 -14.33734 -14.20738 -13.77426 -13.67442 -13.39192 -13.26809 -13.04945 -12.89858 -12.73982 -12.61556 -12.28344 -12.24648 -12.18560 -11.95094 -11.90416 -11.85358 -11.55015 -11.53604 -11.33103 -11.29724 -10.81257 -10.74874 -10.56181 -10.51190 -9.83539 -9.38095 -8.43903 -6.40614 1.24078 1.31153 1.32728 1.66903 2.06785 2.19752 2.76951 2.96096 3.13232 3.36331 3.62870 3.65337 3.73389 3.90018 3.90571 3.94659 4.05210 4.08194 4.15419 4.20997 4.25682 4.30805 4.32952 4.45113 4.53465 4.57612 4.61029 4.69363 4.71817 4.75842 4.79344 4.83740 4.85325 4.88266 4.95844 4.98322 5.07614 5.10591 5.14448 5.24058 5.26548 5.30515 5.35571 5.40417 5.48527 5.62025 5.94240 6.20311 6.27712 6.34124 6.55777 6.65404 7.20352 7.30234 8.72339 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.003391 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.783694 B = 8254.441265 C = 8728.717515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C -0.153 4.153 4 C 0.084 3.916 5 H 0.119 0.881 6 N -0.681 5.681 7 C 0.090 3.910 8 C -0.147 4.147 9 C 0.063 3.937 10 O -0.406 6.406 11 C 0.063 3.937 12 C -0.154 4.154 13 C 0.510 3.490 14 O -0.576 6.576 15 N -0.716 5.716 16 C 0.142 3.858 17 C -0.038 4.038 18 C -0.483 4.483 19 H 0.050 0.950 20 C 0.031 3.969 21 N -0.934 5.934 22 Si 0.945 3.055 23 H -0.290 1.290 24 H -0.298 1.298 25 H -0.251 1.251 26 C -0.192 4.192 27 C -0.163 4.163 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.350 0.650 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.099 0.901 41 H 0.068 0.932 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.061 0.939 45 H 0.413 0.587 46 H 0.043 0.957 47 H 0.046 0.954 48 H 0.269 0.731 49 H 0.095 0.905 50 H 0.082 0.918 51 H 0.086 0.914 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.782 -14.826 -23.887 29.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.127 4.127 3 C -0.210 4.210 4 C -0.029 4.029 5 H 0.136 0.864 6 N -0.314 5.314 7 C -0.019 4.019 8 C -0.186 4.186 9 C -0.013 4.013 10 O -0.325 6.325 11 C -0.014 4.014 12 C -0.193 4.193 13 C 0.297 3.703 14 O -0.454 6.454 15 N -0.373 5.373 16 C 0.018 3.982 17 C -0.039 4.039 18 C -0.521 4.521 19 H 0.068 0.932 20 C -0.168 4.168 21 N -0.573 5.573 22 Si 0.776 3.224 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.177 1.177 26 C -0.230 4.230 27 C -0.200 4.200 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.172 0.828 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.117 0.883 41 H 0.087 0.913 42 H 0.123 0.877 43 H 0.109 0.891 44 H 0.080 0.920 45 H 0.254 0.746 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.114 0.886 50 H 0.101 0.899 51 H 0.104 0.896 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.654 -14.734 -22.603 29.008 hybrid contribution -0.119 0.754 0.204 0.790 sum 10.535 -13.979 -22.399 28.428 Atomic orbital electron populations 1.22212 0.93721 1.03651 1.03143 1.21699 0.97648 0.96326 0.97073 1.21898 1.01086 0.96235 1.01788 1.21621 0.90475 0.99629 0.91192 0.86356 1.60072 1.06673 1.06705 1.57954 1.21619 0.96736 0.89608 0.93946 1.22264 1.02109 0.95135 0.99069 1.22665 0.84464 0.96900 0.97318 1.87918 1.31261 1.50937 1.62412 1.22687 1.03334 0.84323 0.91050 1.22358 0.96108 0.99837 1.00952 1.21361 0.81579 0.80824 0.86504 1.90671 1.49300 1.48674 1.56794 1.46436 1.09084 1.49109 1.32650 1.21155 0.95196 0.93643 0.88156 1.19410 0.89586 0.96427 0.98468 1.20553 1.01013 1.27496 1.03036 0.93161 1.25593 1.00585 0.94735 0.95882 1.69984 1.40469 1.31888 1.14932 0.86058 0.80403 0.80687 0.75207 1.21723 1.22585 1.17678 1.23180 1.04045 0.92821 1.02922 1.22972 1.00397 1.03266 0.93391 0.93163 0.90388 0.90020 0.87319 0.92414 0.90293 0.95428 0.82799 0.91211 0.92887 0.90829 0.91315 0.88251 0.91346 0.87657 0.89140 0.92038 0.74595 0.93974 0.93592 0.92166 0.88644 0.89914 0.89568 0.87199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 8.38 71.98 0.60 -1.89 16 2 C -0.11 -1.70 2.75 -10.79 -0.03 -1.73 16 3 C -0.15 -3.02 8.67 71.98 0.62 -2.40 16 4 C 0.08 1.82 2.07 44.17 0.09 1.91 16 5 H 0.12 2.08 7.16 -2.38 -0.02 2.07 16 6 N -0.68 -14.84 5.57 -472.70 -2.63 -17.47 16 7 C 0.09 1.40 2.36 45.03 0.11 1.50 16 8 C -0.15 -2.58 5.62 30.69 0.17 -2.40 16 9 C 0.06 0.90 6.84 72.02 0.49 1.39 16 10 O -0.41 -7.17 10.77 -148.98 -1.60 -8.77 16 11 C 0.06 0.76 6.84 72.01 0.49 1.25 16 12 C -0.15 -2.12 5.41 30.68 0.17 -1.95 16 13 C 0.51 17.06 5.45 87.66 0.48 17.54 16 14 O -0.58 -25.35 16.44 -3.03 -0.05 -25.40 16 15 N -0.72 -23.95 3.84 -463.08 -1.78 -25.73 16 16 C 0.14 6.30 4.28 86.38 0.37 6.67 16 17 C -0.04 -1.68 1.89 -52.93 -0.10 -1.78 16 18 C -0.48 -27.13 9.60 25.60 0.25 -26.88 16 19 H 0.05 3.07 8.06 -2.91 -0.02 3.04 16 20 C 0.03 1.85 5.45 84.65 0.46 2.31 16 21 N -0.93 -58.39 13.96 21.45 0.30 -58.09 16 22 Si 0.95 49.08 24.07 68.60 1.65 50.73 16 23 H -0.29 -15.66 7.10 99.48 0.71 -14.95 16 24 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 25 H -0.25 -12.34 6.40 99.48 0.64 -11.71 16 26 C -0.19 -7.02 9.49 30.62 0.29 -6.73 16 27 C -0.16 -5.58 9.45 30.62 0.29 -5.29 16 28 H 0.05 1.00 4.15 -2.39 -0.01 0.99 16 29 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.11 1.14 7.37 -2.39 -0.02 1.12 16 32 H 0.06 1.10 6.51 -2.39 -0.02 1.09 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 0.75 7.03 -2.38 -0.02 0.73 16 35 H 0.35 7.52 6.30 -89.70 -0.57 6.96 16 36 H 0.07 0.79 7.10 -2.39 -0.02 0.77 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.07 1.23 7.49 -2.39 -0.02 1.22 16 39 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.41 10.91 3.69 -92.71 -0.34 10.56 16 46 H 0.04 2.11 2.43 -2.39 -0.01 2.10 16 47 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 48 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 49 H 0.10 2.98 7.46 -2.39 -0.02 2.97 16 50 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 51 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 52 H 0.11 2.92 5.48 -2.39 -0.01 2.90 16 Total: -1.00 -75.30 384.17 0.59 -74.71 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.05 Total: 28.50 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.75 Total: -18.47 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -4.11 Total: -101.29 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.65 Total: -34.17 kcal Atomic # 14 Polarization: 49.08 SS G_CDS: 1.65 Total: 50.73 kcal Total: -75.30 0.59 -74.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000437831454.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.009 kcal (2) G-P(sol) polarization free energy of solvation -75.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds