Wall clock time and date at job start Tue Mar 31 2020 14:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50693 * 120.00472 * 2 1 4 4 C 1.53001 * 109.47301 * 244.08233 * 3 2 1 5 5 C 1.53007 * 109.47169 * 4.08102 * 3 2 1 6 6 C 1.52992 * 109.47176 * 184.79348 * 5 3 2 7 7 O 1.42900 * 109.47102 * 185.05696 * 6 5 3 8 8 C 1.42906 * 114.00044 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47585 * 124.08214 * 3 2 1 10 10 O 1.21278 * 120.00442 * 240.00369 * 9 3 2 11 11 N 1.34781 * 119.99678 * 59.99621 * 9 3 2 12 12 C 1.46502 * 120.00051 * 180.02562 * 11 9 3 13 13 C 1.52990 * 109.47314 * 180.02562 * 12 11 9 14 14 C 1.53039 * 109.46448 * 295.03076 * 13 12 11 15 15 C 1.53191 * 109.31477 * 178.59943 * 14 13 12 16 16 N 1.46924 * 108.76625 * 54.65821 * 15 14 13 17 17 C 1.36936 * 120.63371 * 126.40235 * 16 15 14 18 18 H 1.07994 * 120.00299 * 328.66117 * 17 16 15 19 19 C 1.38814 * 119.99853 * 148.65924 * 17 16 15 20 20 N 1.31623 * 119.99851 * 161.86515 * 19 17 16 21 21 Si 1.86795 * 120.00296 * 341.87070 * 19 17 16 22 22 H 1.48504 * 109.47468 * 86.91964 * 21 19 17 23 23 H 1.48498 * 109.47359 * 206.92043 * 21 19 17 24 24 H 1.48504 * 109.46947 * 326.92111 * 21 19 17 25 25 C 1.46934 * 118.73741 * 306.38047 * 16 15 14 26 26 C 1.53043 * 109.46151 * 174.97515 * 13 12 11 27 27 H 1.08000 * 120.00412 * 185.27131 * 1 2 3 28 28 H 1.08000 * 119.99661 * 5.27151 * 1 2 3 29 29 H 1.08002 * 119.99444 * 179.97438 * 2 1 3 30 30 H 1.09001 * 109.47736 * 179.97438 * 4 3 2 31 31 H 1.08997 * 109.47377 * 300.00096 * 4 3 2 32 32 H 1.09008 * 109.47256 * 59.99879 * 4 3 2 33 33 H 1.08998 * 109.47096 * 304.79447 * 5 3 2 34 34 H 1.09001 * 109.46501 * 64.79185 * 5 3 2 35 35 H 1.09008 * 109.47306 * 305.05688 * 6 5 3 36 36 H 1.09004 * 109.47233 * 65.05753 * 6 5 3 37 37 H 1.09003 * 109.46786 * 299.99713 * 8 7 6 38 38 H 1.08996 * 109.47061 * 59.99691 * 8 7 6 39 39 H 1.08995 * 109.46886 * 180.02562 * 8 7 6 40 40 H 0.97003 * 120.00428 * 0.02562 * 11 9 3 41 41 H 1.09000 * 109.47097 * 300.00685 * 12 11 9 42 42 H 1.09004 * 109.46681 * 59.99975 * 12 11 9 43 43 H 1.09002 * 109.46306 * 55.00326 * 13 12 11 44 44 H 1.08999 * 109.49515 * 298.56635 * 14 13 12 45 45 H 1.08999 * 109.49528 * 58.65756 * 14 13 12 46 46 H 1.08993 * 109.59725 * 294.86497 * 15 14 13 47 47 H 1.09008 * 109.69915 * 174.50382 * 15 14 13 48 48 H 0.97000 * 119.99696 * 179.97438 * 20 19 17 49 49 H 1.09000 * 109.58565 * 293.82818 * 25 16 15 50 50 H 1.08996 * 109.70592 * 173.46094 * 25 16 15 51 51 H 1.09009 * 109.49736 * 301.33534 * 26 13 12 52 52 H 1.09001 * 109.50087 * 61.43153 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.8646 1.4314 -1.2974 5 6 1.0725 2.4662 0.1027 6 6 1.8263 3.7921 -0.0174 7 8 0.9201 4.8763 0.1957 8 6 1.5264 6.1671 0.1043 9 6 3.0043 1.3419 1.1767 10 8 2.8931 2.2113 2.0150 11 7 3.9692 0.4087 1.2976 12 6 4.8834 0.4442 2.4418 13 6 5.8748 -0.7164 2.3388 14 6 5.1216 -2.0429 2.4625 15 6 6.1124 -3.2030 2.3238 16 7 7.1881 -3.0261 3.3089 17 6 7.5050 -4.0307 4.1839 18 1 6.7383 -4.7088 4.5282 19 6 8.8119 -4.1773 4.6283 20 7 9.0636 -4.8823 5.7110 21 14 10.2132 -3.3741 3.6901 22 1 10.3989 -1.9822 4.1733 23 1 11.4629 -4.1454 3.9107 24 1 9.8920 -3.3561 2.2403 25 6 7.9176 -1.7510 3.3370 26 6 6.9065 -0.6072 3.4639 27 1 -0.5401 -0.9313 0.0859 28 1 -0.5399 0.9314 -0.0859 29 1 1.8499 -0.9354 0.0004 30 1 3.4093 2.3755 -1.2977 31 1 3.5706 0.6042 -1.3706 32 1 2.1842 1.4047 -2.1486 33 1 0.3399 2.3907 -0.7008 34 1 0.5622 2.4242 1.0649 35 1 2.6188 3.8286 0.7302 36 1 2.2622 3.8734 -1.0132 37 1 2.3128 6.2531 0.8542 38 1 1.9557 6.2973 -0.8890 39 1 0.7731 6.9354 0.2786 40 1 4.0584 -0.2865 0.6270 41 1 5.4284 1.3882 2.4423 42 1 4.3124 0.3540 3.3659 43 1 6.3827 -0.6758 1.3752 44 1 4.6340 -2.0950 3.4359 45 1 4.3709 -2.1097 1.6750 46 1 6.5340 -3.2055 1.3188 47 1 5.6003 -4.1476 2.5077 48 1 9.9768 -4.9850 6.0213 49 1 8.4865 -1.6352 2.4144 50 1 8.5965 -1.7348 4.1895 51 1 7.4265 0.3479 3.3892 52 1 6.4019 -0.6729 4.4279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000438013621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:07 Heat of formation + Delta-G solvation = -73.593851 kcal Electronic energy + Delta-G solvation = -28594.705417 eV Core-core repulsion = 24787.234082 eV Total energy + Delta-G solvation = -3807.471335 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.57555 -39.74914 -38.78223 -37.35997 -36.48143 -34.53489 -32.89616 -32.37488 -31.86558 -30.25274 -28.48812 -27.23388 -26.09371 -25.23287 -24.29040 -23.43562 -22.67761 -21.91466 -20.92669 -19.74670 -18.73108 -17.98999 -17.63455 -17.25640 -16.94315 -16.82560 -16.48096 -15.99263 -15.80931 -15.34628 -15.29489 -15.15727 -15.07872 -14.77760 -14.70277 -14.44688 -14.06393 -13.86659 -13.66315 -13.38811 -13.29103 -13.10549 -12.97777 -12.69303 -12.54282 -12.53409 -12.26414 -12.15874 -12.11011 -11.86880 -11.73688 -11.63861 -11.61529 -11.30466 -11.19932 -10.94578 -10.64809 -10.56084 -10.15441 -10.02995 -8.85373 -8.16711 -5.52288 1.21546 1.30826 1.41024 1.50893 1.71954 2.23704 2.42316 2.77071 3.08156 3.37879 3.60388 3.71135 3.79087 3.87997 3.90935 3.96910 4.11868 4.21509 4.32102 4.39259 4.43614 4.45203 4.49672 4.54309 4.55306 4.55931 4.64477 4.73245 4.77605 4.80186 4.81857 4.84901 4.90660 5.02414 5.04193 5.04632 5.11638 5.13327 5.17506 5.22148 5.28153 5.29400 5.43332 5.60868 5.68594 5.80018 5.90764 6.14431 6.22175 6.55558 6.95416 7.24715 7.64007 8.05452 9.03586 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022869 B = 0.002497 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.083066 B =11211.299858 C =11835.111734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.161 4.161 3 C -0.039 4.039 4 C -0.141 4.141 5 C -0.093 4.093 6 C 0.055 3.945 7 O -0.417 6.417 8 C 0.027 3.973 9 C 0.521 3.479 10 O -0.577 6.577 11 N -0.710 5.710 12 C 0.135 3.865 13 C -0.079 4.079 14 C -0.117 4.117 15 C 0.141 3.859 16 N -0.622 5.622 17 C -0.249 4.249 18 H 0.045 0.955 19 C -0.038 4.038 20 N -0.961 5.961 21 Si 0.953 3.047 22 H -0.270 1.270 23 H -0.313 1.313 24 H -0.260 1.260 25 C 0.119 3.881 26 C -0.120 4.120 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.131 0.869 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.064 0.936 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.413 0.587 41 H 0.065 0.935 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.090 0.910 46 H 0.041 0.959 47 H 0.051 0.949 48 H 0.261 0.739 49 H 0.036 0.964 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.560 17.353 -19.639 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.180 4.180 3 C -0.043 4.043 4 C -0.198 4.198 5 C -0.130 4.130 6 C -0.022 4.022 7 O -0.336 6.336 8 C -0.069 4.069 9 C 0.308 3.692 10 O -0.456 6.456 11 N -0.362 5.362 12 C 0.011 3.989 13 C -0.098 4.098 14 C -0.156 4.156 15 C 0.017 3.983 16 N -0.347 5.347 17 C -0.379 4.379 18 H 0.063 0.937 19 C -0.232 4.232 20 N -0.607 5.607 21 Si 0.781 3.219 22 H -0.196 1.196 23 H -0.242 1.242 24 H -0.185 1.185 25 C -0.005 4.005 26 C -0.160 4.160 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.117 0.883 40 H 0.251 0.749 41 H 0.083 0.917 42 H 0.068 0.932 43 H 0.109 0.891 44 H 0.063 0.937 45 H 0.108 0.892 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -15.713 17.865 -18.913 30.393 hybrid contribution 1.315 -0.394 0.306 1.407 sum -14.398 17.471 -18.607 29.304 Atomic orbital electron populations 1.24249 0.96001 1.03340 0.97868 1.22747 0.96362 0.96104 1.02748 1.19791 0.94625 0.95449 0.94392 1.21956 1.00327 1.03236 0.94318 1.21392 0.97557 0.90991 1.03092 1.22820 0.92566 0.86587 1.00183 1.87783 1.37242 1.15387 1.93220 1.22885 0.99241 0.84128 1.00670 1.20874 0.80897 0.80540 0.86906 1.90681 1.72867 1.37800 1.44281 1.45928 1.32309 1.31049 1.26935 1.21256 0.90742 0.98327 0.88600 1.21176 0.95136 0.93649 0.99824 1.21945 0.97697 0.94255 1.01723 1.21144 0.88664 0.97198 0.91331 1.44494 1.40490 1.11255 1.38497 1.18823 0.92586 1.08401 1.18059 0.93695 1.26067 0.99932 0.99116 0.98095 1.69966 1.20440 1.46408 1.23881 0.85840 0.78273 0.77442 0.80321 1.19590 1.24175 1.18491 1.21420 0.94482 0.85836 0.98804 1.21884 0.97253 0.98289 0.98566 0.86710 0.87599 0.85115 0.91962 0.90189 0.89419 0.88632 0.92408 0.93543 0.91792 0.94506 0.92703 0.88339 0.74906 0.91668 0.93166 0.89061 0.93748 0.89183 0.94082 0.93084 0.93010 0.94579 0.93533 0.90063 0.93140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.19 13.73 67.78 0.93 -1.26 16 2 C -0.16 -2.08 8.54 25.65 0.22 -1.86 16 3 C -0.04 -0.60 0.62 -53.67 -0.03 -0.63 16 4 C -0.14 -1.42 7.87 71.98 0.57 -0.85 16 5 C -0.09 -1.66 3.01 30.59 0.09 -1.57 16 6 C 0.05 1.08 5.06 71.98 0.36 1.45 16 7 O -0.42 -9.24 10.70 -148.98 -1.59 -10.84 16 8 C 0.03 0.42 11.01 113.37 1.25 1.67 16 9 C 0.52 11.30 6.15 87.66 0.54 11.84 16 10 O -0.58 -17.57 13.98 -3.02 -0.04 -17.61 16 11 N -0.71 -13.08 5.06 -463.07 -2.34 -15.42 16 12 C 0.13 3.08 5.06 86.38 0.44 3.52 16 13 C -0.08 -1.93 2.19 -10.77 -0.02 -1.95 16 14 C -0.12 -3.14 5.25 30.67 0.16 -2.98 16 15 C 0.14 4.96 6.52 86.36 0.56 5.52 16 16 N -0.62 -28.25 2.72 -699.08 -1.90 -30.15 16 17 C -0.25 -14.07 10.01 84.03 0.84 -13.23 16 18 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 19 C -0.04 -2.20 5.25 84.86 0.45 -1.75 16 20 N -0.96 -60.83 13.97 21.65 0.30 -60.53 16 21 Si 0.95 46.18 24.37 68.60 1.67 47.86 16 22 H -0.27 -12.22 6.43 99.48 0.64 -11.58 16 23 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 24 H -0.26 -11.94 6.94 99.48 0.69 -11.25 16 25 C 0.12 4.80 4.20 86.36 0.36 5.16 16 26 C -0.12 -3.75 5.36 30.67 0.16 -3.58 16 27 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 28 H 0.11 1.30 5.69 -2.91 -0.02 1.28 16 29 H 0.13 1.32 8.00 -2.91 -0.02 1.30 16 30 H 0.06 0.68 6.46 -2.39 -0.02 0.66 16 31 H 0.08 0.59 7.56 -2.39 -0.02 0.57 16 32 H 0.09 0.64 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.35 6.91 -2.39 -0.02 1.33 16 34 H 0.06 1.32 7.83 -2.39 -0.02 1.30 16 35 H 0.05 1.15 5.86 -2.38 -0.01 1.14 16 36 H 0.06 0.98 6.65 -2.38 -0.02 0.96 16 37 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.41 5.33 6.90 -92.71 -0.64 4.69 16 41 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.09 1.73 7.15 -2.39 -0.02 1.72 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.05 1.88 7.93 -2.38 -0.02 1.87 16 48 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 49 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 50 H 0.05 2.12 4.71 -2.39 -0.01 2.11 16 51 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 52 H 0.05 1.74 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -74.58 393.93 3.14 -71.44 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.16 Total: 15.77 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.88 Total: -0.52 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.94 Total: -106.10 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -1.64 Total: -28.45 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.67 Total: 47.86 kcal Total: -74.58 3.14 -71.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000438013621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.149 kcal (2) G-P(sol) polarization free energy of solvation -74.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds