Wall clock time and date at job start Tue Mar 31 2020 13:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 C 1.50699 * 109.47389 * 239.99836 * 2 1 3 5 5 H 1.08000 * 119.99792 * 240.00038 * 4 2 1 6 6 C 1.37873 * 119.99861 * 60.00216 * 4 2 1 7 7 N 1.31509 * 120.00195 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46944 * 59.99325 * 8 6 4 10 10 H 1.48492 * 109.47298 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47000 * 299.99716 * 8 6 4 12 12 C 1.52997 * 109.46978 * 119.99586 * 2 1 3 13 13 N 1.46500 * 109.47204 * 300.00201 * 12 2 1 14 14 C 1.34780 * 120.00188 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00249 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47155 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.47094 * 179.97438 * 17 16 14 19 19 C 1.34774 * 119.99881 * 179.97438 * 18 17 16 20 20 O 1.21285 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99942 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47078 * 59.99862 * 21 19 18 23 23 C 1.52999 * 109.47317 * 179.97438 * 22 21 19 24 24 C 1.53005 * 109.47159 * 300.00546 * 23 22 21 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 23 22 26 26 C 1.53000 * 109.47083 * 179.97438 * 21 19 18 27 27 H 1.09001 * 109.47142 * 300.00180 * 1 2 3 28 28 H 1.09004 * 109.47006 * 60.00233 * 1 2 3 29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.46765 * 299.99413 * 3 2 1 32 32 H 1.09001 * 109.47377 * 59.99963 * 3 2 1 33 33 H 0.97006 * 120.00358 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47497 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47045 * 60.00167 * 12 2 1 36 36 H 0.96998 * 119.99994 * 0.02562 * 13 12 2 37 37 H 1.08992 * 109.47396 * 60.00290 * 16 14 13 38 38 H 1.09002 * 109.46959 * 300.00095 * 16 14 13 39 39 H 1.09000 * 109.47360 * 59.99681 * 17 16 14 40 40 H 1.09002 * 109.46935 * 299.99706 * 17 16 14 41 41 H 0.96998 * 119.99994 * 359.97438 * 18 17 16 42 42 H 1.09002 * 109.46959 * 299.99950 * 21 19 18 43 43 H 1.08996 * 109.47853 * 300.00179 * 22 21 19 44 44 H 1.09002 * 109.47153 * 60.00207 * 22 21 19 45 45 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 47 47 H 1.09002 * 109.46935 * 299.99411 * 24 23 22 48 48 H 1.09001 * 109.46812 * 179.97438 * 24 23 22 49 49 H 1.08993 * 109.47194 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.46695 * 59.99734 * 25 24 23 51 51 H 1.08992 * 109.47399 * 299.99938 * 26 21 19 52 52 H 1.09004 * 109.46724 * 60.00424 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.8261 -2.5204 -4.0075 10 1 1.8262 -0.4207 -5.2203 11 1 3.8066 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6696 15 8 2.5740 -1.4773 3.7809 16 6 1.3739 0.2189 4.9000 17 6 1.8840 -0.5022 6.1493 18 7 1.3956 0.1885 7.3454 19 6 1.7209 -0.2722 8.5696 20 8 2.4182 -1.2582 8.6809 21 6 1.2181 0.4380 9.8000 22 6 -0.3119 0.4379 9.7994 23 6 -0.8225 1.1583 11.0489 24 6 -0.3127 0.4363 12.2979 25 6 1.2172 0.4365 12.2985 26 6 1.7272 -0.2838 11.0492 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1299 -0.7208 1.2496 35 1 1.6766 -1.7488 1.2493 36 1 0.9936 0.7579 2.3563 37 1 0.2840 0.2189 4.8996 38 1 1.7372 1.2466 4.9003 39 1 2.9740 -0.5018 6.1495 40 1 1.5210 -1.5300 6.1492 41 1 0.8382 0.9773 7.2564 42 1 1.5813 1.4657 9.8002 43 1 -0.6751 0.9517 8.9095 44 1 -0.6752 -0.5899 9.7992 45 1 -1.9125 1.1578 11.0488 46 1 -0.4592 2.1860 11.0496 47 1 -0.6760 -0.5914 12.2972 48 1 -0.6761 0.9499 13.1881 49 1 1.5803 -0.0774 13.1885 50 1 1.5804 1.4642 12.2991 51 1 1.3636 -1.3113 11.0488 52 1 2.8172 -0.2840 11.0498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457992121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:21 Heat of formation + Delta-G solvation = -117.873922 kcal Electronic energy + Delta-G solvation = -27337.042724 eV Core-core repulsion = 23527.651261 eV Total energy + Delta-G solvation = -3809.391463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.44945 -39.39463 -37.92467 -36.49519 -35.23561 -33.32688 -32.06273 -31.14996 -31.04091 -30.18110 -25.96723 -25.76785 -25.26403 -24.21220 -23.07934 -22.61826 -20.86243 -20.22358 -19.81808 -18.81633 -17.45893 -17.07118 -16.13161 -15.97741 -15.70021 -15.40428 -15.13450 -14.89927 -14.59557 -14.49017 -14.40339 -14.17565 -13.58333 -13.21828 -12.97043 -12.93961 -12.74198 -12.59942 -12.55371 -12.22234 -11.96875 -11.72483 -11.55705 -11.53090 -11.36535 -11.21694 -11.03723 -10.86884 -10.83361 -10.75219 -10.51956 -10.42185 -10.23285 -9.90144 -9.67381 -9.62202 -9.27930 -9.23370 -8.82877 -8.49190 -8.34937 -6.04606 -4.14697 2.47292 2.87299 2.96660 3.28795 3.33041 3.36781 3.78082 4.22350 4.26449 4.31651 4.38603 4.62227 4.76531 4.78596 4.87004 4.96968 4.98023 5.05409 5.09588 5.10028 5.18658 5.22205 5.39612 5.41613 5.59698 5.64655 5.69610 5.76113 5.79073 5.80862 5.91941 5.94396 6.04922 6.18717 6.24685 6.29412 6.46770 6.74109 6.77542 6.88890 6.97881 6.97917 7.28370 7.31383 7.51767 7.66640 7.97399 7.98907 8.05401 8.11307 8.35386 8.63253 8.85731 9.51236 10.96758 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.001755 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.722229 B =15946.612441 C =16378.745613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.131 3.869 13 N -0.716 5.716 14 C 0.507 3.493 15 O -0.549 6.549 16 C -0.155 4.155 17 C 0.135 3.865 18 N -0.732 5.732 19 C 0.514 3.486 20 O -0.536 6.536 21 C -0.105 4.105 22 C -0.111 4.111 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.120 4.120 26 C -0.100 4.100 27 H 0.006 0.994 28 H 0.086 0.914 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.086 0.914 32 H 0.006 0.994 33 H 0.260 0.740 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.398 0.602 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.399 0.601 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.070 0.930 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.410 6.086 25.962 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.366 5.366 14 C 0.292 3.708 15 O -0.428 6.428 16 C -0.195 4.195 17 C 0.011 3.989 18 N -0.384 5.384 19 C 0.300 3.700 20 O -0.412 6.412 21 C -0.127 4.127 22 C -0.149 4.149 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.138 4.138 27 H 0.025 0.975 28 H 0.104 0.896 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.104 0.896 32 H 0.025 0.975 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.233 0.767 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.233 0.767 42 H 0.115 0.885 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.081 0.919 51 H 0.089 0.911 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.471 4.759 25.925 26.735 hybrid contribution -0.248 0.401 -1.122 1.217 sum -4.719 5.159 24.803 25.770 Atomic orbital electron populations 1.21830 0.97740 0.99179 1.00057 1.18366 0.92818 0.92781 0.90602 1.21829 0.98596 0.98323 1.00055 1.20942 1.31553 1.12126 0.89881 0.92484 1.24875 0.94846 0.94925 0.98859 1.69787 1.36596 1.22755 1.23349 0.86626 0.79251 0.79802 0.82138 1.20277 1.21321 1.20272 1.21733 0.98194 0.95820 0.83375 1.46313 1.52523 1.31772 1.06016 1.20219 0.81016 0.84884 0.84731 1.90716 1.38477 1.26623 1.86936 1.21816 1.03015 1.01248 0.93434 1.21044 1.00176 0.96294 0.81396 1.46058 1.54158 1.32246 1.05965 1.20690 0.80112 0.84662 0.84524 1.90731 1.37514 1.26151 1.86766 1.21364 0.97160 1.00887 0.93256 1.21542 0.92852 1.01856 0.98656 1.21529 1.00475 0.99367 0.94163 1.21575 0.95798 1.00942 0.97714 1.21553 0.95590 1.00776 0.97810 1.21341 1.01088 0.99498 0.91888 0.97539 0.89577 0.95443 0.95442 0.89583 0.97537 0.92941 0.92670 0.92670 0.76683 0.88499 0.88502 0.90531 0.90523 0.76737 0.88545 0.91414 0.91252 0.91590 0.91712 0.91851 0.91965 0.91659 0.91934 0.91135 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 2 C 0.05 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.85 8.08 37.16 0.30 -2.55 16 4 C -0.51 -13.11 8.01 -34.44 -0.28 -13.39 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.27 9.35 55.43 0.52 -22.76 16 8 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 C 0.13 2.72 4.50 -4.04 -0.02 2.71 16 13 N -0.72 -11.95 4.96 -60.29 -0.30 -12.25 16 14 C 0.51 8.13 7.83 -10.98 -0.09 8.04 16 15 O -0.55 -11.17 15.98 5.55 0.09 -11.08 16 16 C -0.15 -1.62 5.81 -27.88 -0.16 -1.78 16 17 C 0.13 1.61 4.96 -4.04 -0.02 1.59 16 18 N -0.73 -6.66 5.45 -60.29 -0.33 -6.98 16 19 C 0.51 5.60 7.15 -10.99 -0.08 5.52 16 20 O -0.54 -8.34 15.98 5.55 0.09 -8.25 16 21 C -0.11 -0.77 2.53 -91.77 -0.23 -1.00 16 22 C -0.11 -0.64 5.10 -26.73 -0.14 -0.78 16 23 C -0.12 -0.57 5.92 -26.73 -0.16 -0.72 16 24 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 25 C -0.12 -0.69 5.92 -26.76 -0.16 -0.85 16 26 C -0.10 -0.79 4.49 -26.76 -0.12 -0.91 16 27 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 28 H 0.09 2.10 6.07 -51.93 -0.32 1.78 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.09 2.09 6.07 -51.93 -0.32 1.78 16 32 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 33 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.40 5.83 6.16 -40.82 -0.25 5.58 16 37 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.08 1.09 8.10 -51.93 -0.42 0.66 16 40 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.40 2.28 7.89 -40.82 -0.32 1.95 16 42 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.31 7.56 -51.93 -0.39 -0.09 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 47 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 50 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 51 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 52 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -31.16 402.47 -9.51 -40.67 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -9.45 Total: 3.70 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -1.17 Total: -4.68 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.11 Total: -41.99 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: 0.18 Total: -19.34 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.16 -9.51 -40.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.203 kcal (2) G-P(sol) polarization free energy of solvation -31.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds