Wall clock time and date at job start Tue Mar 31 2020 13:58:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 C 1.50699 * 109.47389 * 239.99836 * 2 1 3 5 5 H 1.08000 * 119.99792 * 240.00038 * 4 2 1 6 6 C 1.37873 * 119.99861 * 60.00216 * 4 2 1 7 7 N 1.31509 * 120.00195 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99968 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.46944 * 59.99325 * 8 6 4 10 10 H 1.48492 * 109.47298 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47000 * 299.99716 * 8 6 4 12 12 C 1.52997 * 109.46978 * 119.99586 * 2 1 3 13 13 N 1.46500 * 109.47204 * 300.00201 * 12 2 1 14 14 C 1.34780 * 120.00188 * 179.97438 * 13 12 2 15 15 O 1.21285 * 119.99712 * 0.02562 * 14 13 12 16 16 C 1.50699 * 120.00249 * 180.02562 * 14 13 12 17 17 C 1.53005 * 109.47155 * 180.02562 * 16 14 13 18 18 N 1.46500 * 109.47094 * 179.97438 * 17 16 14 19 19 C 1.34774 * 119.99881 * 179.97438 * 18 17 16 20 20 O 1.21285 * 120.00019 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99942 * 180.02562 * 19 18 17 22 22 C 1.52997 * 109.47078 * 59.99862 * 21 19 18 23 23 C 1.52999 * 109.47317 * 179.97438 * 22 21 19 24 24 C 1.53005 * 109.47159 * 300.00546 * 23 22 21 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 23 22 26 26 C 1.53000 * 109.47083 * 179.97438 * 21 19 18 27 27 H 1.09001 * 109.47142 * 300.00180 * 1 2 3 28 28 H 1.09004 * 109.47006 * 60.00233 * 1 2 3 29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46866 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.46765 * 299.99413 * 3 2 1 32 32 H 1.09001 * 109.47377 * 59.99963 * 3 2 1 33 33 H 0.97006 * 120.00358 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47497 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47045 * 60.00167 * 12 2 1 36 36 H 0.96998 * 119.99994 * 0.02562 * 13 12 2 37 37 H 1.08992 * 109.47396 * 60.00290 * 16 14 13 38 38 H 1.09002 * 109.46959 * 300.00095 * 16 14 13 39 39 H 1.09000 * 109.47360 * 59.99681 * 17 16 14 40 40 H 1.09002 * 109.46935 * 299.99706 * 17 16 14 41 41 H 0.96998 * 119.99994 * 359.97438 * 18 17 16 42 42 H 1.09002 * 109.46959 * 299.99950 * 21 19 18 43 43 H 1.08996 * 109.47853 * 300.00179 * 22 21 19 44 44 H 1.09002 * 109.47153 * 60.00207 * 22 21 19 45 45 H 1.09000 * 109.47486 * 180.02562 * 23 22 21 46 46 H 1.09002 * 109.46716 * 60.00091 * 23 22 21 47 47 H 1.09002 * 109.46935 * 299.99411 * 24 23 22 48 48 H 1.09001 * 109.46812 * 179.97438 * 24 23 22 49 49 H 1.08993 * 109.47194 * 179.97438 * 25 24 23 50 50 H 1.09002 * 109.46695 * 59.99734 * 25 24 23 51 51 H 1.08992 * 109.47399 * 299.99938 * 26 21 19 52 52 H 1.09004 * 109.46724 * 60.00424 * 26 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8296 -2.6034 8 14 2.3216 -1.1204 -4.0079 9 1 1.8261 -2.5204 -4.0075 10 1 1.8262 -0.4207 -5.2203 11 1 3.8066 -1.1209 -4.0080 12 6 2.0400 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6696 15 8 2.5740 -1.4773 3.7809 16 6 1.3739 0.2189 4.9000 17 6 1.8840 -0.5022 6.1493 18 7 1.3956 0.1885 7.3454 19 6 1.7209 -0.2722 8.5696 20 8 2.4182 -1.2582 8.6809 21 6 1.2181 0.4380 9.8000 22 6 -0.3119 0.4379 9.7994 23 6 -0.8225 1.1583 11.0489 24 6 -0.3127 0.4363 12.2979 25 6 1.2172 0.4365 12.2985 26 6 1.7272 -0.2838 11.0492 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7083 1.1608 -3.4844 34 1 3.1299 -0.7208 1.2496 35 1 1.6766 -1.7488 1.2493 36 1 0.9936 0.7579 2.3563 37 1 0.2840 0.2189 4.8996 38 1 1.7372 1.2466 4.9003 39 1 2.9740 -0.5018 6.1495 40 1 1.5210 -1.5300 6.1492 41 1 0.8382 0.9773 7.2564 42 1 1.5813 1.4657 9.8002 43 1 -0.6751 0.9517 8.9095 44 1 -0.6752 -0.5899 9.7992 45 1 -1.9125 1.1578 11.0488 46 1 -0.4592 2.1860 11.0496 47 1 -0.6760 -0.5914 12.2972 48 1 -0.6761 0.9499 13.1881 49 1 1.5803 -0.0774 13.1885 50 1 1.5804 1.4642 12.2991 51 1 1.3636 -1.3113 11.0488 52 1 2.8172 -0.2840 11.0498 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457992121.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:20 Heat of formation + Delta-G solvation = -137.752423 kcal Electronic energy + Delta-G solvation = -27337.904721 eV Core-core repulsion = 23527.651261 eV Total energy + Delta-G solvation = -3810.253460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29536 -40.71559 -38.58106 -38.15204 -36.25248 -34.99734 -33.03225 -32.51869 -31.61968 -31.09970 -27.54636 -27.54141 -27.00764 -25.22908 -23.76465 -23.29761 -21.73702 -21.24637 -20.61323 -20.51875 -18.50453 -18.10242 -17.66962 -17.08522 -16.90354 -16.62081 -16.31029 -16.24215 -15.72244 -15.22703 -15.06031 -14.98890 -14.77520 -14.63253 -14.54801 -14.11227 -13.95079 -13.58625 -13.24040 -13.17806 -13.09085 -13.04764 -12.89600 -12.68540 -12.62441 -12.45732 -12.23108 -12.20451 -12.13334 -12.01379 -11.55223 -11.47143 -11.32748 -11.28311 -10.98875 -10.92505 -10.70944 -10.61989 -10.39189 -10.15815 -9.92585 -8.02314 -6.17570 1.43253 1.44833 1.51098 1.62287 1.69709 1.95242 2.43175 2.62681 3.21199 3.58119 3.68894 3.79734 3.82092 4.03688 4.08046 4.26333 4.31191 4.35940 4.44260 4.48641 4.51893 4.55362 4.58895 4.62459 4.73352 4.73790 4.85054 4.94075 5.01318 5.02036 5.07783 5.12713 5.15732 5.19710 5.21352 5.27538 5.28390 5.35959 5.38433 5.40633 5.43753 5.58860 5.61036 5.67742 5.69212 6.17788 6.23201 6.44579 6.54736 6.69228 6.86269 7.26504 7.35335 7.49900 8.96090 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.037042 B = 0.001755 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.722229 B =15946.612441 C =16378.745613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.049 3.951 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.041 0.959 6 C 0.030 3.970 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.279 1.279 10 H -0.282 1.282 11 H -0.279 1.279 12 C 0.147 3.853 13 N -0.708 5.708 14 C 0.503 3.497 15 O -0.598 6.598 16 C -0.135 4.135 17 C 0.141 3.859 18 N -0.712 5.712 19 C 0.508 3.492 20 O -0.592 6.592 21 C -0.096 4.096 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.124 4.124 25 C -0.114 4.114 26 C -0.102 4.102 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.260 0.740 34 H 0.035 0.965 35 H 0.035 0.965 36 H 0.412 0.588 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.420 0.580 42 H 0.123 0.877 43 H 0.088 0.912 44 H 0.052 0.948 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.064 0.936 50 H 0.075 0.925 51 H 0.047 0.953 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.156 8.786 27.329 29.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.049 3.951 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.359 5.359 14 C 0.291 3.709 15 O -0.480 6.480 16 C -0.174 4.174 17 C 0.016 3.984 18 N -0.366 5.366 19 C 0.296 3.704 20 O -0.472 6.472 21 C -0.117 4.117 22 C -0.146 4.146 23 C -0.152 4.152 24 C -0.162 4.162 25 C -0.152 4.152 26 C -0.140 4.140 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.053 0.947 35 H 0.053 0.947 36 H 0.250 0.750 37 H 0.153 0.847 38 H 0.153 0.847 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.259 0.741 42 H 0.141 0.859 43 H 0.107 0.893 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.092 0.908 49 H 0.083 0.917 50 H 0.094 0.906 51 H 0.066 0.934 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.268 7.526 27.296 29.000 hybrid contribution 0.325 -0.483 -1.518 1.626 sum -5.943 7.043 25.778 27.376 Atomic orbital electron populations 1.21665 0.96871 0.98617 1.00634 1.18379 0.93447 0.93150 0.90169 1.21664 0.97813 0.97674 1.00630 1.21248 1.31750 1.12148 0.91743 0.94055 1.25413 0.95190 0.95620 1.00825 1.69884 1.36834 1.23170 1.23645 0.85869 0.78583 0.78830 0.79817 1.20435 1.20688 1.20420 1.21236 0.96870 0.95044 0.84557 1.46099 1.52716 1.31989 1.05139 1.21170 0.79755 0.84231 0.85762 1.90709 1.40634 1.29040 1.87606 1.21749 1.05020 1.01703 0.88963 1.20750 0.98604 0.95687 0.83383 1.45825 1.53715 1.32447 1.04575 1.21445 0.79096 0.84008 0.85835 1.90713 1.40113 1.28776 1.87555 1.21387 0.98339 1.01316 0.90652 1.21565 0.91241 1.01465 1.00374 1.21528 1.00994 0.99710 0.92937 1.21598 0.95113 1.00719 0.98755 1.21522 0.96171 1.01064 0.96430 1.21325 1.00061 0.98872 0.93711 0.93891 0.91932 0.96533 0.96530 0.91939 0.93891 0.92999 0.94667 0.94670 0.74979 0.84738 0.84728 0.93318 0.93365 0.74135 0.85918 0.89310 0.92909 0.90708 0.90281 0.92882 0.90777 0.91703 0.90622 0.93412 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.11 8.08 71.98 0.58 -4.52 16 2 C 0.05 2.21 0.50 -52.93 -0.03 2.18 16 3 C -0.12 -5.10 8.08 71.98 0.58 -4.52 16 4 C -0.53 -27.84 8.01 25.60 0.21 -27.64 16 5 H 0.04 2.23 7.74 -2.91 -0.02 2.21 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -46.98 9.35 21.44 0.20 -46.78 16 8 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.11 4.50 86.38 0.39 6.50 16 13 N -0.71 -22.17 4.96 -463.06 -2.30 -24.46 16 14 C 0.50 15.35 7.83 87.66 0.69 16.03 16 15 O -0.60 -24.70 15.98 -3.05 -0.05 -24.75 16 16 C -0.13 -2.34 5.81 29.85 0.17 -2.17 16 17 C 0.14 3.22 4.96 86.38 0.43 3.65 16 18 N -0.71 -11.35 5.45 -463.05 -2.52 -13.88 16 19 C 0.51 10.71 7.15 87.66 0.63 11.34 16 20 O -0.59 -19.22 15.98 -3.05 -0.05 -19.27 16 21 C -0.10 -1.23 2.53 -11.54 -0.03 -1.26 16 22 C -0.11 -0.97 5.10 30.59 0.16 -0.81 16 23 C -0.11 -0.72 5.92 30.60 0.18 -0.54 16 24 C -0.12 -1.04 5.92 30.60 0.18 -0.86 16 25 C -0.11 -1.15 5.92 30.58 0.18 -0.97 16 26 C -0.10 -1.59 4.49 30.58 0.14 -1.46 16 27 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 28 H 0.06 2.98 6.07 -2.38 -0.01 2.97 16 29 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 32 H 0.04 1.46 6.86 -2.39 -0.02 1.45 16 33 H 0.26 13.19 8.31 -92.70 -0.77 12.42 16 34 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.41 10.46 6.16 -92.71 -0.57 9.89 16 37 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 40 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 41 H 0.42 2.98 7.89 -92.71 -0.73 2.25 16 42 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.09 0.43 7.56 -2.39 -0.02 0.41 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 46 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 48 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 52 H 0.05 0.98 8.10 -2.39 -0.02 0.97 16 Total: -1.00 -72.34 402.47 1.80 -70.54 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.40 Total: 17.19 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 4.89 Total: -3.06 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -4.62 Total: -85.12 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -0.10 Total: -44.02 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -72.34 1.80 -70.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457992121.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.209 kcal (2) G-P(sol) polarization free energy of solvation -72.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds