Wall clock time and date at job start Tue Mar 31 2020 14:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99736 * 2 1 4 4 H 1.08994 * 112.88687 * 338.15999 * 3 2 1 5 5 C 1.53953 * 113.66183 * 109.50687 * 3 2 1 6 6 C 1.53944 * 87.29605 * 89.73288 * 5 3 2 7 7 H 1.09001 * 113.66323 * 139.29530 * 6 5 3 8 8 N 1.46502 * 113.66666 * 270.26401 * 6 5 3 9 9 C 1.46499 * 119.99703 * 2.62488 * 8 6 5 10 10 C 1.34774 * 120.00032 * 182.62816 * 8 6 5 11 11 O 1.21582 * 120.00061 * 359.97438 * 10 8 6 12 12 N 1.34777 * 120.00076 * 179.97438 * 10 8 6 13 13 C 1.46493 * 120.00353 * 179.72335 * 12 10 8 14 14 C 1.53001 * 109.47562 * 180.27130 * 13 12 10 15 15 C 1.52993 * 109.47085 * 300.00620 * 14 13 12 16 16 C 1.53009 * 109.46500 * 59.99907 * 14 13 12 17 17 C 1.50697 * 109.47248 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99973 * 3.11131 * 17 14 13 19 19 C 1.37878 * 119.99909 * 183.10661 * 17 14 13 20 20 N 1.31511 * 120.00256 * 193.03423 * 19 17 14 21 21 Si 1.86805 * 119.99816 * 13.03950 * 19 17 14 22 22 H 1.48499 * 109.47287 * 83.80839 * 21 19 17 23 23 H 1.48501 * 109.46919 * 203.80540 * 21 19 17 24 24 H 1.48498 * 109.47256 * 323.80384 * 21 19 17 25 25 C 1.52904 * 113.66122 * 206.69241 * 3 2 1 26 26 C 1.52903 * 121.13806 * 36.15078 * 25 3 2 27 27 C 1.53952 * 86.78141 * 100.81722 * 26 25 3 28 28 C 1.52910 * 121.13838 * 144.71161 * 25 3 2 29 29 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 299.99512 * 1 2 3 31 31 H 1.08991 * 109.47331 * 60.00155 * 1 2 3 32 32 H 1.09003 * 113.57968 * 335.13149 * 5 3 2 33 33 H 1.09002 * 113.65114 * 204.35031 * 5 3 2 34 34 H 1.08997 * 109.47188 * 264.19552 * 9 8 6 35 35 H 1.09000 * 109.47087 * 24.20153 * 9 8 6 36 36 H 1.09002 * 109.46951 * 144.20030 * 9 8 6 37 37 H 0.97009 * 119.99744 * 359.97438 * 12 10 8 38 38 H 1.08997 * 109.47046 * 300.27679 * 13 12 10 39 39 H 1.09006 * 109.46960 * 60.27566 * 13 12 10 40 40 H 1.08994 * 109.47675 * 64.34377 * 15 14 13 41 41 H 1.09008 * 109.47145 * 184.34738 * 15 14 13 42 42 H 1.09000 * 109.47385 * 304.33799 * 15 14 13 43 43 H 1.09007 * 109.46942 * 60.00705 * 16 14 13 44 44 H 1.09002 * 109.46846 * 179.97438 * 16 14 13 45 45 H 1.08994 * 109.47489 * 300.00250 * 16 14 13 46 46 H 0.96995 * 120.00054 * 179.97438 * 20 19 17 47 47 H 1.09007 * 113.66511 * 215.28515 * 26 25 3 48 48 H 1.09001 * 113.66565 * 346.34602 * 26 25 3 49 49 H 1.09002 * 113.57888 * 270.13158 * 27 26 25 50 50 H 1.09000 * 113.58254 * 139.34183 * 27 26 25 51 51 H 1.09001 * 113.65686 * 13.65235 * 28 25 3 52 52 H 1.08999 * 113.66631 * 144.61841 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3311 2.0718 -0.3736 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0650 0.7557 7 1 4.8793 1.6391 0.9863 8 7 4.1308 -0.3642 1.0411 9 6 3.0740 -1.0820 1.7582 10 6 5.2401 -1.0187 0.6440 11 8 6.1169 -0.4230 0.0486 12 7 5.3774 -2.3334 0.9070 13 6 6.5803 -3.0461 0.4701 14 6 6.4819 -4.5154 0.8855 15 6 6.3588 -4.6079 2.4076 16 6 5.2498 -5.1477 0.2349 17 6 7.7191 -5.2486 0.4355 18 1 8.5199 -4.7098 -0.0492 19 6 7.8289 -6.6074 0.6426 20 7 8.9910 -7.2039 0.4910 21 14 6.3266 -7.6009 1.1383 22 1 5.5526 -7.9668 -0.0751 23 1 6.7595 -8.8358 1.8403 24 1 5.4736 -6.7900 2.0438 25 6 3.4029 1.3572 -0.6291 26 6 3.7587 0.4866 -1.8347 27 6 3.5447 1.7443 -2.6964 28 6 3.8608 2.5718 -1.4373 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2962 1.1373 2.1888 33 1 2.7582 2.7529 1.5000 34 1 3.3184 -1.1230 2.8196 35 1 2.1257 -0.5618 1.6234 36 1 2.9917 -2.0952 1.3649 37 1 4.6779 -2.8085 1.3824 38 1 6.6680 -2.9802 -0.6143 39 1 7.4581 -2.5956 0.9337 40 1 5.4247 -4.1447 2.7255 41 1 6.3663 -5.6552 2.7098 42 1 7.1978 -4.0898 2.8722 43 1 5.3375 -5.0818 -0.8497 44 1 5.1799 -6.1946 0.5304 45 1 4.3547 -4.6174 0.5599 46 1 9.0683 -8.1597 0.6370 47 1 4.7890 0.1307 -1.8285 48 1 3.0364 -0.3059 -2.0305 49 1 2.5202 1.8617 -3.0496 50 1 4.2825 1.8596 -3.4905 51 1 3.2199 3.4451 -1.3156 52 1 4.9193 2.8028 -1.3182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459238443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:34 Heat of formation + Delta-G solvation = 9.583463 kcal Electronic energy + Delta-G solvation = -30148.511554 eV Core-core repulsion = 26344.647058 eV Total energy + Delta-G solvation = -3803.864496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.40419 -39.21084 -37.33676 -36.73491 -35.44359 -33.52263 -32.56084 -31.24194 -27.41404 -26.96706 -26.37190 -26.05133 -25.49015 -24.93572 -24.54537 -23.92218 -21.17875 -19.64617 -19.18161 -18.21320 -17.66933 -16.94400 -16.25925 -16.07317 -15.95178 -15.78705 -15.20857 -15.06879 -14.74265 -14.13239 -14.06004 -13.56760 -13.51462 -12.99627 -12.86637 -12.74846 -12.63105 -12.42713 -12.39660 -12.27428 -12.20428 -12.12361 -11.98959 -11.66142 -11.31602 -11.25163 -11.01447 -10.45318 -10.36123 -10.32507 -10.25387 -10.17593 -10.11460 -9.99294 -9.65674 -9.46219 -9.06190 -8.60852 -8.51142 -8.42428 -8.05442 -6.10012 -4.07191 2.91575 3.27166 3.31171 3.33965 3.41841 3.66307 4.26638 4.29847 4.39409 4.39849 4.58125 4.66226 4.70664 4.82359 4.98080 5.03369 5.11585 5.21242 5.30072 5.32757 5.37091 5.39789 5.50208 5.55064 5.60829 5.72872 5.81129 5.85559 5.86653 5.90485 6.00419 6.12158 6.15291 6.18213 6.33770 6.41127 6.49086 6.53255 6.60566 6.67516 6.77708 6.79311 6.91853 6.94322 7.11454 7.28976 7.37385 7.50452 7.78391 8.41593 8.53721 8.95411 9.10481 9.53947 11.03249 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003382 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.585529 B = 8276.045909 C = 8739.513272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.088 3.912 4 H 0.073 0.927 5 C -0.168 4.168 6 C 0.168 3.832 7 H 0.088 0.912 8 N -0.610 5.610 9 C 0.068 3.932 10 C 0.705 3.295 11 O -0.594 6.594 12 N -0.738 5.738 13 C 0.161 3.839 14 C 0.028 3.972 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.510 4.510 18 H 0.077 0.923 19 C 0.075 3.925 20 N -0.893 5.893 21 Si 0.888 3.112 22 H -0.287 1.287 23 H -0.307 1.307 24 H -0.250 1.250 25 C -0.119 4.119 26 C -0.112 4.112 27 C -0.142 4.142 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.041 0.959 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.392 0.608 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.020 0.980 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.040 0.960 45 H 0.028 0.972 46 H 0.264 0.736 47 H 0.096 0.904 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.066 0.934 51 H 0.065 0.935 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.877 18.741 1.074 27.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.269 6.269 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.206 4.206 6 C 0.063 3.937 7 H 0.106 0.894 8 N -0.347 5.347 9 C -0.075 4.075 10 C 0.406 3.594 11 O -0.473 6.473 12 N -0.394 5.394 13 C 0.038 3.962 14 C 0.027 3.973 15 C -0.199 4.199 16 C -0.203 4.203 17 C -0.548 4.548 18 H 0.095 0.905 19 C -0.128 4.128 20 N -0.530 5.530 21 Si 0.721 3.279 22 H -0.214 1.214 23 H -0.236 1.236 24 H -0.176 1.176 25 C -0.121 4.121 26 C -0.149 4.149 27 C -0.179 4.179 28 C -0.141 4.141 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.077 0.923 37 H 0.227 0.773 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.039 0.961 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.047 0.953 46 H 0.074 0.926 47 H 0.114 0.886 48 H 0.084 0.916 49 H 0.091 0.909 50 H 0.085 0.915 51 H 0.084 0.916 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.976 18.794 0.651 26.716 hybrid contribution -1.410 -0.854 0.475 1.715 sum -20.386 17.940 1.126 27.179 Atomic orbital electron populations 1.22840 0.81348 1.02937 0.99924 1.88004 1.19177 1.26040 1.93697 1.22773 0.93471 0.85103 0.95680 0.90890 1.23883 0.96805 1.01673 0.98228 1.21302 0.97140 0.81257 0.94032 0.89435 1.46461 1.18849 1.08354 1.61013 1.22050 0.93133 0.97452 0.94879 1.15867 0.81792 0.82008 0.79697 1.90862 1.41926 1.67294 1.47256 1.45605 1.24089 1.07613 1.62064 1.21320 0.84474 0.91548 0.98862 1.18728 0.95106 0.91132 0.92326 1.22286 0.98271 1.01288 0.98090 1.22337 0.97518 0.99209 1.01186 1.20736 1.01191 0.93000 1.39863 0.90511 1.24971 0.95527 0.97813 0.94450 1.69942 1.23167 1.10656 1.49239 0.87255 0.83484 0.78347 0.78788 1.21447 1.23583 1.17607 1.23162 0.94684 0.99216 0.95001 1.22530 1.03043 0.95915 0.93450 1.22849 1.01071 0.97380 0.96643 1.22521 1.01744 0.94752 0.95042 0.89435 0.94030 0.94031 0.89779 0.88136 0.94081 0.87990 0.92266 0.77263 0.92353 0.92278 0.96105 0.92584 0.93317 0.92796 0.94223 0.95256 0.92613 0.88567 0.91620 0.90896 0.91494 0.91650 0.89070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.86 101.05 1.10 1.27 16 2 O -0.35 -3.40 6.63 -35.23 -0.23 -3.64 16 3 C 0.09 0.78 4.15 -26.28 -0.11 0.68 16 4 H 0.07 0.54 7.90 -51.93 -0.41 0.13 16 5 C -0.17 -1.42 7.19 -25.75 -0.19 -1.60 16 6 C 0.17 2.04 3.80 -67.48 -0.26 1.79 16 7 H 0.09 1.18 8.05 -51.93 -0.42 0.76 16 8 N -0.61 -8.59 2.79 -179.15 -0.50 -9.09 16 9 C 0.07 0.77 8.35 59.85 0.50 1.27 16 10 C 0.70 12.73 7.63 -86.92 -0.66 12.06 16 11 O -0.59 -12.68 14.90 5.29 0.08 -12.60 16 12 N -0.74 -13.30 4.85 -65.23 -0.32 -13.62 16 13 C 0.16 3.42 4.50 -4.04 -0.02 3.40 16 14 C 0.03 0.64 0.50 -155.66 -0.08 0.56 16 15 C -0.14 -2.99 7.72 37.15 0.29 -2.70 16 16 C -0.15 -3.07 7.49 37.16 0.28 -2.79 16 17 C -0.51 -13.99 8.62 -34.44 -0.30 -14.29 16 18 H 0.08 2.31 7.99 -52.48 -0.42 1.89 16 19 C 0.07 2.11 5.36 -17.82 -0.10 2.01 16 20 N -0.89 -27.07 13.96 55.43 0.77 -26.29 16 21 Si 0.89 21.51 22.84 -169.99 -3.88 17.63 16 22 H -0.29 -6.92 7.09 56.52 0.40 -6.52 16 23 H -0.31 -7.59 7.11 56.52 0.40 -7.19 16 24 H -0.25 -5.52 4.61 56.52 0.26 -5.26 16 25 C -0.12 -1.31 0.89 -154.71 -0.14 -1.44 16 26 C -0.11 -1.48 7.02 -26.28 -0.18 -1.67 16 27 C -0.14 -1.47 8.08 -25.75 -0.21 -1.67 16 28 C -0.10 -0.98 7.84 -26.29 -0.21 -1.19 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.68 6.30 -51.93 -0.33 0.35 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.10 1.01 3.50 -51.93 -0.18 0.83 16 36 H 0.06 0.70 6.68 -51.93 -0.35 0.36 16 37 H 0.39 6.36 4.05 -40.82 -0.17 6.19 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.02 0.37 6.99 -51.93 -0.36 0.00 16 41 H 0.06 1.24 4.28 -51.92 -0.22 1.01 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.88 2.10 -51.93 -0.11 0.77 16 45 H 0.03 0.52 6.86 -51.93 -0.36 0.16 16 46 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.10 1.61 6.54 -51.93 -0.34 1.27 16 48 H 0.07 0.93 7.83 -51.93 -0.41 0.52 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 50 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 378.00 15.07 5.70 5.70 Total: -1.00 -32.07 378.00 -7.50 -39.57 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -8.84 Total: 6.66 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.28 Total: -4.32 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.04 Total: -49.00 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.15 Total: -16.24 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -3.88 Total: 17.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.07 -7.50 -39.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.149 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds