Wall clock time and date at job start Tue Mar 31 2020 14:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99736 * 2 1 4 4 H 1.08994 * 112.88687 * 338.15999 * 3 2 1 5 5 C 1.53953 * 113.66183 * 109.50687 * 3 2 1 6 6 C 1.53944 * 87.29605 * 89.73288 * 5 3 2 7 7 H 1.09001 * 113.66323 * 139.29530 * 6 5 3 8 8 N 1.46502 * 113.66666 * 270.26401 * 6 5 3 9 9 C 1.46499 * 119.99703 * 2.62488 * 8 6 5 10 10 C 1.34774 * 120.00032 * 182.62816 * 8 6 5 11 11 O 1.21582 * 120.00061 * 359.97438 * 10 8 6 12 12 N 1.34777 * 120.00076 * 179.97438 * 10 8 6 13 13 C 1.46493 * 120.00353 * 179.72335 * 12 10 8 14 14 C 1.53001 * 109.47562 * 180.27130 * 13 12 10 15 15 C 1.52993 * 109.47085 * 300.00620 * 14 13 12 16 16 C 1.53009 * 109.46500 * 59.99907 * 14 13 12 17 17 C 1.50697 * 109.47248 * 179.97438 * 14 13 12 18 18 H 1.08003 * 119.99973 * 3.11131 * 17 14 13 19 19 C 1.37878 * 119.99909 * 183.10661 * 17 14 13 20 20 N 1.31511 * 120.00256 * 193.03423 * 19 17 14 21 21 Si 1.86805 * 119.99816 * 13.03950 * 19 17 14 22 22 H 1.48499 * 109.47287 * 83.80839 * 21 19 17 23 23 H 1.48501 * 109.46919 * 203.80540 * 21 19 17 24 24 H 1.48498 * 109.47256 * 323.80384 * 21 19 17 25 25 C 1.52904 * 113.66122 * 206.69241 * 3 2 1 26 26 C 1.52903 * 121.13806 * 36.15078 * 25 3 2 27 27 C 1.53952 * 86.78141 * 100.81722 * 26 25 3 28 28 C 1.52910 * 121.13838 * 144.71161 * 25 3 2 29 29 H 1.09006 * 109.46844 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47217 * 299.99512 * 1 2 3 31 31 H 1.08991 * 109.47331 * 60.00155 * 1 2 3 32 32 H 1.09003 * 113.57968 * 335.13149 * 5 3 2 33 33 H 1.09002 * 113.65114 * 204.35031 * 5 3 2 34 34 H 1.08997 * 109.47188 * 264.19552 * 9 8 6 35 35 H 1.09000 * 109.47087 * 24.20153 * 9 8 6 36 36 H 1.09002 * 109.46951 * 144.20030 * 9 8 6 37 37 H 0.97009 * 119.99744 * 359.97438 * 12 10 8 38 38 H 1.08997 * 109.47046 * 300.27679 * 13 12 10 39 39 H 1.09006 * 109.46960 * 60.27566 * 13 12 10 40 40 H 1.08994 * 109.47675 * 64.34377 * 15 14 13 41 41 H 1.09008 * 109.47145 * 184.34738 * 15 14 13 42 42 H 1.09000 * 109.47385 * 304.33799 * 15 14 13 43 43 H 1.09007 * 109.46942 * 60.00705 * 16 14 13 44 44 H 1.09002 * 109.46846 * 179.97438 * 16 14 13 45 45 H 1.08994 * 109.47489 * 300.00250 * 16 14 13 46 46 H 0.96995 * 120.00054 * 179.97438 * 20 19 17 47 47 H 1.09007 * 113.66511 * 215.28515 * 26 25 3 48 48 H 1.09001 * 113.66565 * 346.34602 * 26 25 3 49 49 H 1.09002 * 113.57888 * 270.13158 * 27 26 25 50 50 H 1.09000 * 113.58254 * 139.34183 * 27 26 25 51 51 H 1.09001 * 113.65686 * 13.65235 * 28 25 3 52 52 H 1.08999 * 113.66631 * 144.61841 * 28 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3311 2.0718 -0.3736 5 6 2.6916 1.6784 1.3292 6 6 3.9819 1.0650 0.7557 7 1 4.8793 1.6391 0.9863 8 7 4.1308 -0.3642 1.0411 9 6 3.0740 -1.0820 1.7582 10 6 5.2401 -1.0187 0.6440 11 8 6.1169 -0.4230 0.0486 12 7 5.3774 -2.3334 0.9070 13 6 6.5803 -3.0461 0.4701 14 6 6.4819 -4.5154 0.8855 15 6 6.3588 -4.6079 2.4076 16 6 5.2498 -5.1477 0.2349 17 6 7.7191 -5.2486 0.4355 18 1 8.5199 -4.7098 -0.0492 19 6 7.8289 -6.6074 0.6426 20 7 8.9910 -7.2039 0.4910 21 14 6.3266 -7.6009 1.1383 22 1 5.5526 -7.9668 -0.0751 23 1 6.7595 -8.8358 1.8403 24 1 5.4736 -6.7900 2.0438 25 6 3.4029 1.3572 -0.6291 26 6 3.7587 0.4866 -1.8347 27 6 3.5447 1.7443 -2.6964 28 6 3.8608 2.5718 -1.4373 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2962 1.1373 2.1888 33 1 2.7582 2.7529 1.5000 34 1 3.3184 -1.1230 2.8196 35 1 2.1257 -0.5618 1.6234 36 1 2.9917 -2.0952 1.3649 37 1 4.6779 -2.8085 1.3824 38 1 6.6680 -2.9802 -0.6143 39 1 7.4581 -2.5956 0.9337 40 1 5.4247 -4.1447 2.7255 41 1 6.3663 -5.6552 2.7098 42 1 7.1978 -4.0898 2.8722 43 1 5.3375 -5.0818 -0.8497 44 1 5.1799 -6.1946 0.5304 45 1 4.3547 -4.6174 0.5599 46 1 9.0683 -8.1597 0.6370 47 1 4.7890 0.1307 -1.8285 48 1 3.0364 -0.3059 -2.0305 49 1 2.5202 1.8617 -3.0496 50 1 4.2825 1.8596 -3.4905 51 1 3.2199 3.4451 -1.3156 52 1 4.9193 2.8028 -1.3182 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238443.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:33 Heat of formation + Delta-G solvation = -11.888112 kcal Electronic energy + Delta-G solvation = -30149.442632 eV Core-core repulsion = 26344.647058 eV Total energy + Delta-G solvation = -3804.795574 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.31296 -40.57271 -38.45064 -38.02833 -36.53445 -35.05536 -33.99538 -33.00239 -28.21758 -28.08539 -27.78342 -27.51207 -26.96044 -26.35275 -25.32570 -25.00199 -22.20758 -20.96055 -20.85138 -19.30273 -18.82609 -18.09523 -17.75846 -17.35521 -17.05535 -16.91718 -16.55737 -16.21954 -15.78898 -15.44869 -15.11957 -14.97090 -14.82781 -14.65093 -14.33646 -14.02942 -13.92900 -13.76925 -13.65291 -13.35029 -13.30638 -12.98847 -12.97043 -12.91133 -12.51390 -12.38035 -12.14735 -11.97426 -11.95025 -11.86990 -11.77479 -11.29276 -11.24325 -11.12127 -11.02710 -10.95730 -10.62912 -10.38005 -10.19772 -10.02917 -9.24901 -8.30098 -6.32492 1.35409 1.37157 1.50737 1.72833 2.25195 2.34290 2.63497 3.05578 3.15359 3.47723 3.58008 3.69926 3.86187 3.87908 4.03629 4.06140 4.31723 4.32340 4.38288 4.40297 4.53468 4.58087 4.66028 4.67947 4.71400 4.74894 4.78305 4.80473 4.84376 4.87524 4.91279 4.91882 4.96064 4.96806 5.01689 5.04428 5.05805 5.13440 5.17312 5.20450 5.41819 5.43024 5.56579 5.60243 5.70601 5.75606 5.79789 6.08412 6.30922 6.37103 6.71243 7.10672 7.32321 7.69525 8.87323 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019568 B = 0.003382 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.585529 B = 8276.045909 C = 8739.513272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.375 6.375 3 C 0.097 3.903 4 H 0.101 0.899 5 C -0.146 4.146 6 C 0.142 3.858 7 H 0.065 0.935 8 N -0.600 5.600 9 C 0.062 3.938 10 C 0.698 3.302 11 O -0.636 6.636 12 N -0.729 5.729 13 C 0.179 3.821 14 C 0.029 3.971 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.518 4.518 18 H 0.026 0.974 19 C 0.017 3.983 20 N -0.947 5.947 21 Si 0.948 3.052 22 H -0.281 1.281 23 H -0.314 1.314 24 H -0.205 1.205 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.133 4.133 28 C -0.095 4.095 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.094 0.906 33 H 0.127 0.873 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.057 0.943 37 H 0.404 0.596 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.061 0.939 41 H 0.050 0.950 42 H 0.038 0.962 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.265 0.735 47 H 0.050 0.950 48 H 0.051 0.949 49 H 0.094 0.906 50 H 0.060 0.940 51 H 0.098 0.902 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.025 20.309 2.842 32.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.294 6.294 3 C 0.039 3.961 4 H 0.119 0.881 5 C -0.184 4.184 6 C 0.037 3.963 7 H 0.083 0.917 8 N -0.335 5.335 9 C -0.079 4.079 10 C 0.400 3.600 11 O -0.518 6.518 12 N -0.386 5.386 13 C 0.055 3.945 14 C 0.028 3.972 15 C -0.196 4.196 16 C -0.200 4.200 17 C -0.556 4.556 18 H 0.044 0.956 19 C -0.180 4.180 20 N -0.586 5.586 21 Si 0.777 3.223 22 H -0.209 1.209 23 H -0.243 1.243 24 H -0.129 1.129 25 C -0.122 4.122 26 C -0.161 4.161 27 C -0.170 4.170 28 C -0.132 4.132 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.145 0.855 34 H 0.074 0.926 35 H 0.141 0.859 36 H 0.075 0.925 37 H 0.242 0.758 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.112 0.888 50 H 0.079 0.921 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.197 20.405 2.446 31.746 hybrid contribution 0.300 -1.256 -0.160 1.301 sum -23.896 19.148 2.286 30.707 Atomic orbital electron populations 1.22997 0.79626 1.03629 1.01128 1.87957 1.21064 1.26603 1.93741 1.22749 0.92530 0.85648 0.95204 0.88146 1.23872 0.93305 1.02996 0.98230 1.21637 0.98397 0.80040 0.96179 0.91668 1.46487 1.17893 1.09188 1.59968 1.22297 0.93085 0.97322 0.95211 1.16079 0.82591 0.81829 0.79538 1.90835 1.43882 1.68093 1.49034 1.45252 1.23234 1.07766 1.62369 1.20814 0.85218 0.91372 0.97133 1.18649 0.93766 0.90937 0.93884 1.22187 1.00129 1.01187 0.96066 1.22259 0.97932 0.99195 1.00624 1.21009 1.02029 0.93430 1.39139 0.95551 1.25865 0.98654 0.98920 0.94583 1.70102 1.25966 1.11029 1.51488 0.86276 0.79995 0.76561 0.79450 1.20856 1.24307 1.12906 1.23298 0.96731 0.98765 0.93421 1.22392 0.99875 0.96933 0.96850 1.22841 1.02099 0.95532 0.96567 1.22454 1.01486 0.95431 0.93861 0.89129 0.92201 0.93398 0.88756 0.85493 0.92598 0.85868 0.92472 0.75769 0.94788 0.94710 0.92001 0.93120 0.94264 0.93722 0.94487 0.91259 0.92605 0.93160 0.92981 0.88761 0.92123 0.88319 0.90711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.86 113.37 1.23 1.43 16 2 O -0.37 -5.93 6.63 -148.98 -0.99 -6.92 16 3 C 0.10 1.35 4.15 30.88 0.13 1.47 16 4 H 0.10 0.91 7.90 -2.39 -0.02 0.89 16 5 C -0.15 -1.87 7.19 31.23 0.22 -1.65 16 6 C 0.14 3.27 3.80 45.28 0.17 3.44 16 7 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 8 N -0.60 -16.19 2.79 -838.98 -2.34 -18.53 16 9 C 0.06 1.22 8.35 127.77 1.07 2.29 16 10 C 0.70 25.56 7.63 179.06 1.37 26.92 16 11 O -0.64 -28.72 14.90 -3.97 -0.06 -28.78 16 12 N -0.73 -25.95 4.85 -478.55 -2.32 -28.27 16 13 C 0.18 7.89 4.50 86.38 0.39 8.28 16 14 C 0.03 1.30 0.50 -52.93 -0.03 1.27 16 15 C -0.14 -5.52 7.72 71.98 0.56 -4.97 16 16 C -0.14 -5.71 7.49 71.99 0.54 -5.17 16 17 C -0.52 -29.68 8.62 25.60 0.22 -29.46 16 18 H 0.03 1.72 7.99 -2.91 -0.02 1.69 16 19 C 0.02 0.99 5.36 84.66 0.45 1.45 16 20 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 21 Si 0.95 43.69 22.84 68.60 1.57 45.26 16 22 H -0.28 -12.70 7.09 99.48 0.71 -11.99 16 23 H -0.31 -14.77 7.11 99.48 0.71 -14.07 16 24 H -0.20 -8.01 4.61 99.48 0.46 -7.55 16 25 C -0.12 -2.46 0.89 -52.31 -0.05 -2.51 16 26 C -0.12 -3.31 7.02 30.88 0.22 -3.10 16 27 C -0.13 -2.61 8.08 31.23 0.25 -2.36 16 28 C -0.09 -1.65 7.84 30.88 0.24 -1.41 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.09 1.06 6.30 -2.39 -0.02 1.05 16 33 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.12 1.93 3.50 -2.39 -0.01 1.92 16 36 H 0.06 1.15 6.68 -2.39 -0.02 1.14 16 37 H 0.40 12.05 4.05 -92.70 -0.38 11.67 16 38 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.03 1.67 8.14 -2.38 -0.02 1.65 16 40 H 0.06 1.95 6.99 -2.39 -0.02 1.94 16 41 H 0.05 2.07 4.28 -2.38 -0.01 2.06 16 42 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 44 H 0.04 1.51 2.10 -2.39 -0.01 1.50 16 45 H 0.07 2.20 6.86 -2.39 -0.02 2.18 16 46 H 0.27 15.74 8.31 -92.71 -0.77 14.96 16 47 H 0.05 1.82 6.54 -2.38 -0.02 1.80 16 48 H 0.05 1.49 7.83 -2.39 -0.02 1.47 16 49 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -76.56 378.00 3.43 -73.13 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 0.29 Total: 27.74 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 6.99 Total: -4.07 kcal Atomic # 7 Polarization: -102.00 SS G_CDS: -4.36 Total: -106.36 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -1.05 Total: -35.70 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.57 Total: 45.26 kcal Total: -76.56 3.43 -73.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238443.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.243 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds