Wall clock time and date at job start Tue Mar 31 2020 14:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47206 * 2 1 4 4 C 1.50705 * 109.47312 * 119.99479 * 2 1 3 5 5 H 1.07997 * 120.00000 * 119.99629 * 4 2 1 6 6 C 1.37878 * 119.99758 * 300.00357 * 4 2 1 7 7 N 1.31513 * 120.00282 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99656 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47122 * 179.97438 * 8 6 4 10 10 H 1.48500 * 109.47470 * 300.00117 * 8 6 4 11 11 H 1.48505 * 109.46892 * 60.00383 * 8 6 4 12 12 C 1.52999 * 109.47452 * 239.99555 * 2 1 3 13 13 N 1.46501 * 109.46976 * 59.99890 * 12 2 1 14 14 C 1.34778 * 120.00354 * 179.97438 * 13 12 2 15 15 O 1.21591 * 119.99498 * 355.02172 * 14 13 12 16 16 N 1.34774 * 120.00168 * 175.01513 * 14 13 12 17 17 C 1.46920 * 120.63071 * 4.94461 * 16 14 13 18 18 C 1.53631 * 108.54307 * 126.36980 * 17 16 14 19 19 C 1.53040 * 109.23946 * 54.85681 * 18 17 16 20 20 C 1.53040 * 109.53848 * 298.50964 * 19 18 17 21 21 H 1.09001 * 109.52864 * 301.40318 * 20 19 18 22 22 O 1.42894 * 109.49883 * 181.31524 * 20 19 18 23 23 C 1.42906 * 113.99898 * 150.16377 * 22 20 19 24 24 C 1.52998 * 109.47052 * 180.02562 * 23 22 20 25 25 C 1.53000 * 117.49914 * 243.74526 * 24 23 22 26 26 C 1.53002 * 117.50125 * 175.08626 * 24 23 22 27 27 C 1.46924 * 120.62859 * 185.22899 * 16 14 13 28 28 H 1.09004 * 109.47724 * 300.00393 * 1 2 3 29 29 H 1.09000 * 109.47120 * 60.00256 * 1 2 3 30 30 H 1.09005 * 109.47068 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47420 * 180.02562 * 3 2 1 32 32 H 1.09005 * 109.46639 * 299.99477 * 3 2 1 33 33 H 1.08994 * 109.47141 * 59.99140 * 3 2 1 34 34 H 0.96993 * 120.00080 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.47085 * 179.97438 * 12 2 1 36 36 H 1.08991 * 109.47171 * 300.00273 * 12 2 1 37 37 H 0.97005 * 120.00144 * 0.02562 * 13 12 2 38 38 H 1.09003 * 109.58957 * 246.19945 * 17 16 14 39 39 H 1.08999 * 109.58628 * 6.62902 * 17 16 14 40 40 H 1.09001 * 109.62999 * 294.86898 * 18 17 16 41 41 H 1.09000 * 109.45696 * 174.73947 * 18 17 16 42 42 H 1.08999 * 109.45657 * 178.49433 * 19 18 17 43 43 H 1.09000 * 109.45932 * 58.53390 * 19 18 17 44 44 H 1.09005 * 109.46925 * 300.00266 * 23 22 20 45 45 H 1.09000 * 109.47287 * 60.00388 * 23 22 20 46 46 H 1.09000 * 115.55014 * 29.41778 * 24 23 22 47 47 H 1.08999 * 117.50014 * 0.02562 * 25 24 23 48 48 H 1.09005 * 117.49729 * 145.02319 * 25 24 23 49 49 H 1.08993 * 117.50007 * 214.98224 * 26 24 23 50 50 H 1.09002 * 117.49631 * 359.97438 * 26 24 23 51 51 H 1.09002 * 109.58605 * 353.36885 * 27 16 14 52 52 H 1.09004 * 109.58859 * 113.79961 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 1.8269 -0.4196 5.2205 10 1 1.8259 -2.5200 4.0080 11 1 3.8064 -1.1204 4.0083 12 6 2.0400 -0.7213 -1.2491 13 7 1.5517 -0.0308 -2.4454 14 6 1.8777 -0.4910 -3.6695 15 8 2.6497 -1.4235 -3.7826 16 7 1.3480 0.0824 -4.7681 17 6 0.4997 1.2766 -4.6542 18 6 1.0664 2.3681 -5.5748 19 6 1.1862 1.8161 -6.9971 20 6 2.1526 0.6295 -7.0059 21 1 3.1267 0.9502 -6.6368 22 8 2.2873 0.1340 -8.3394 23 6 3.5602 -0.4544 -8.6150 24 6 3.5915 -0.9469 -10.0632 25 6 3.7459 -2.4514 -10.2946 26 6 4.9140 -1.5074 -10.5904 27 6 1.6027 -0.4785 -6.1020 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1299 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6765 1.9564 0.8899 34 1 0.7088 1.1616 3.4843 35 1 3.1300 -0.7209 -1.2493 36 1 1.6767 -1.7489 -1.2491 37 1 0.9942 0.7581 -2.3565 38 1 -0.5185 1.0319 -4.9568 39 1 0.5018 1.6292 -3.6228 40 1 2.0506 2.6729 -5.2188 41 1 0.3966 3.2281 -5.5735 42 1 1.5629 2.5961 -7.6588 43 1 0.2058 1.4886 -7.3433 44 1 4.3437 0.2890 -8.4673 45 1 3.7254 -1.2952 -7.9413 46 1 2.9660 -0.3917 -10.7622 47 1 3.8247 -3.0904 -9.4150 48 1 3.2222 -2.8860 -11.1461 49 1 5.1583 -1.3213 -11.6362 50 1 5.7618 -1.5248 -9.9055 51 1 2.3328 -1.2842 -6.0262 52 1 0.6726 -0.8634 -6.5203 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238861.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:03 Heat of formation + Delta-G solvation = -70.779041 kcal Electronic energy + Delta-G solvation = -28475.976403 eV Core-core repulsion = 24668.627127 eV Total energy + Delta-G solvation = -3807.349276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57431 -39.87429 -38.55762 -37.96934 -36.97273 -35.07035 -33.57487 -32.62643 -31.19574 -28.05745 -27.56211 -27.47376 -27.06588 -25.69824 -23.87715 -23.26832 -22.33823 -21.55418 -20.65976 -20.64482 -19.32218 -17.90766 -17.79390 -17.31814 -17.02880 -16.62410 -16.33065 -16.20544 -15.76870 -15.41926 -15.25551 -14.94831 -14.82833 -14.66292 -14.47525 -14.08395 -13.99237 -13.83515 -13.62989 -13.19468 -13.09568 -12.72563 -12.68031 -12.62040 -12.42651 -12.25190 -12.18560 -12.09877 -12.04743 -11.94830 -11.65039 -11.48719 -11.40477 -11.31643 -11.22698 -11.08406 -10.71321 -10.58343 -10.39312 -10.11617 -9.44619 -8.01557 -6.16914 1.44773 1.45647 1.51703 1.59214 2.10223 2.44065 2.48539 2.89940 3.04378 3.21925 3.69844 3.77222 3.84947 3.93636 3.95962 3.98356 4.12507 4.19805 4.29386 4.39485 4.43451 4.48682 4.52182 4.58860 4.65069 4.69212 4.72470 4.75547 4.76039 4.90518 4.97231 4.99348 5.03186 5.05312 5.11169 5.13482 5.19642 5.19834 5.21766 5.32174 5.37649 5.46915 5.60766 5.67622 5.67925 5.91537 6.15478 6.18353 6.21831 6.44227 6.86415 6.98965 7.50327 7.54965 8.97295 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002381 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.704406 B =11757.312853 C =12614.970663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.167 3.833 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.624 5.624 17 C 0.100 3.900 18 C -0.124 4.124 19 C -0.108 4.108 20 C 0.083 3.917 21 H 0.055 0.945 22 O -0.382 6.382 23 C 0.088 3.912 24 C -0.163 4.163 25 C -0.183 4.183 26 C -0.165 4.165 27 C 0.112 3.888 28 H 0.064 0.936 29 H 0.035 0.965 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.035 0.965 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.404 0.596 38 H 0.092 0.908 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.115 0.885 47 H 0.089 0.911 48 H 0.106 0.894 49 H 0.113 0.887 50 H 0.097 0.903 51 H 0.065 0.935 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.397 4.522 -24.251 24.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.207 1.207 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.042 3.958 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.524 6.524 16 N -0.363 5.363 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.145 4.145 20 C 0.024 3.976 21 H 0.073 0.927 22 O -0.300 6.300 23 C 0.011 3.989 24 C -0.181 4.181 25 C -0.220 4.220 26 C -0.202 4.202 27 C -0.012 4.012 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.244 0.756 38 H 0.110 0.890 39 H 0.101 0.899 40 H 0.080 0.920 41 H 0.131 0.869 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.133 0.867 47 H 0.108 0.892 48 H 0.125 0.875 49 H 0.132 0.868 50 H 0.115 0.885 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.091 3.982 -24.306 24.631 hybrid contribution 0.505 -0.533 1.469 1.642 sum 0.414 3.449 -22.838 23.101 Atomic orbital electron populations 1.21653 0.96974 0.98659 1.00354 1.18365 0.93363 0.93079 0.90090 1.21654 0.97863 0.97776 1.00334 1.21214 1.31797 1.12189 0.91516 0.93830 1.25440 0.95165 0.95628 1.00891 1.69886 1.36873 1.23172 1.23690 0.85823 0.78584 0.78812 0.79611 1.20737 1.20324 1.20358 1.21148 0.96698 0.94638 0.83292 1.45377 1.55877 1.33166 1.03767 1.16116 0.80502 0.82030 0.81431 1.90836 1.41296 1.33864 1.86374 1.47203 1.53213 1.31327 1.04516 1.22094 0.94675 0.84186 1.01274 1.21977 1.02617 0.98131 0.93527 1.21561 0.99695 0.95791 0.97493 1.22420 0.99323 0.93870 0.81992 0.92698 1.87867 1.34941 1.78207 1.28985 1.22159 0.85207 0.96617 0.94868 1.22126 1.02593 0.97358 0.96012 1.23163 1.02812 0.92109 1.03882 1.23082 0.91451 1.02701 1.02958 1.21867 1.01761 0.96714 0.80869 0.91720 0.94569 0.96372 0.96432 0.94631 0.91684 0.92973 0.94791 0.94724 0.75595 0.89031 0.89920 0.92006 0.86903 0.89771 0.89961 0.92388 0.93987 0.86675 0.89240 0.87544 0.86839 0.88479 0.91620 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.09 8.01 25.60 0.21 -27.89 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.51 5.15 84.66 0.44 1.94 16 7 N -0.90 -47.51 9.35 21.45 0.20 -47.31 16 8 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.17 7.33 4.51 86.38 0.39 7.72 16 13 N -0.72 -26.26 4.87 -478.54 -2.33 -28.59 16 14 C 0.70 25.75 8.30 179.05 1.49 27.23 16 15 O -0.64 -29.21 15.77 -4.00 -0.06 -29.27 16 16 N -0.62 -17.01 2.97 -836.04 -2.48 -19.49 16 17 C 0.10 1.87 6.42 86.51 0.56 2.43 16 18 C -0.12 -1.78 6.10 30.82 0.19 -1.59 16 19 C -0.11 -1.63 5.53 30.62 0.17 -1.46 16 20 C 0.08 1.71 2.76 30.67 0.08 1.80 16 21 H 0.05 1.24 7.79 -2.39 -0.02 1.22 16 22 O -0.38 -8.09 9.99 -148.98 -1.49 -9.58 16 23 C 0.09 1.70 6.03 71.98 0.43 2.13 16 24 C -0.16 -2.62 6.05 -10.79 -0.07 -2.68 16 25 C -0.18 -2.69 10.18 30.62 0.31 -2.38 16 26 C -0.17 -2.12 10.25 30.62 0.31 -1.81 16 27 C 0.11 2.82 6.06 86.37 0.52 3.35 16 28 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 29 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 30 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.03 1.31 6.86 -2.38 -0.02 1.29 16 33 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 34 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 35 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.40 12.62 3.65 -92.70 -0.34 12.28 16 38 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.08 1.57 5.64 -2.39 -0.01 1.56 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.06 1.04 8.09 -2.38 -0.02 1.02 16 45 H 0.04 0.90 7.76 -2.39 -0.02 0.88 16 46 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.09 1.44 8.03 -2.39 -0.02 1.42 16 48 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 50 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.07 2.02 6.87 -2.39 -0.02 2.01 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.84 399.54 2.58 -61.25 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: 0.55 Total: 26.45 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 6.17 Total: 1.85 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -4.61 Total: -95.38 kcal Atomic # 8 Polarization: -37.30 SS G_CDS: -1.55 Total: -38.85 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -63.84 2.58 -61.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238861.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.525 kcal (2) G-P(sol) polarization free energy of solvation -63.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds