Wall clock time and date at job start Tue Mar 31 2020 14:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50702 * 109.47345 * 240.00070 * 2 1 3 5 5 H 1.07996 * 119.99500 * 240.00199 * 4 2 1 6 6 C 1.37879 * 119.99942 * 59.99966 * 4 2 1 7 7 N 1.31508 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47209 * 59.99398 * 8 6 4 10 10 H 1.48498 * 109.46933 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46834 * 299.99907 * 8 6 4 12 12 C 1.52995 * 109.47333 * 119.99624 * 2 1 3 13 13 N 1.46503 * 109.47378 * 300.00434 * 12 2 1 14 14 C 1.34764 * 120.00417 * 179.97438 * 13 12 2 15 15 O 1.21590 * 120.00175 * 4.98023 * 14 13 12 16 16 N 1.34776 * 120.00231 * 184.98047 * 14 13 12 17 17 C 1.46952 * 120.65396 * 354.59495 * 16 14 13 18 18 C 1.53197 * 108.88867 * 233.53250 * 17 16 14 19 19 C 1.53045 * 109.31151 * 305.43908 * 18 17 16 20 20 C 1.53048 * 109.53494 * 61.36241 * 19 18 17 21 21 H 1.09002 * 109.52170 * 58.60421 * 20 19 18 22 22 O 1.42907 * 109.49597 * 178.68056 * 20 19 18 23 23 C 1.42893 * 113.99930 * 209.84272 * 22 20 19 24 24 C 1.53003 * 109.47030 * 180.02562 * 23 22 20 25 25 C 1.52993 * 117.49627 * 243.62054 * 24 23 22 26 26 C 1.52999 * 117.49828 * 174.99649 * 24 23 22 27 27 C 1.46931 * 120.62891 * 174.76934 * 16 14 13 28 28 H 1.09002 * 109.47345 * 300.00345 * 1 2 3 29 29 H 1.09008 * 109.47296 * 60.00329 * 1 2 3 30 30 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47019 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47453 * 299.99299 * 3 2 1 33 33 H 1.08996 * 109.47301 * 60.00117 * 3 2 1 34 34 H 0.97005 * 120.00266 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47621 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47032 * 59.99621 * 12 2 1 37 37 H 0.97005 * 119.99756 * 359.97438 * 13 12 2 38 38 H 1.09000 * 109.46861 * 113.74964 * 17 16 14 39 39 H 1.08998 * 109.71491 * 353.45631 * 17 16 14 40 40 H 1.08996 * 109.50134 * 185.49124 * 18 17 16 41 41 H 1.08996 * 109.49988 * 65.38789 * 18 17 16 42 42 H 1.09002 * 109.46127 * 301.34586 * 19 18 17 43 43 H 1.09001 * 109.46184 * 181.38329 * 19 18 17 44 44 H 1.09007 * 109.47212 * 300.00000 * 23 22 20 45 45 H 1.08995 * 109.47561 * 59.99853 * 23 22 20 46 46 H 1.08999 * 115.54875 * 29.32884 * 24 23 22 47 47 H 1.08994 * 117.50378 * 359.97438 * 25 24 23 48 48 H 1.09004 * 117.49825 * 145.02108 * 25 24 23 49 49 H 1.09000 * 117.49986 * 214.97731 * 26 24 23 50 50 H 1.09001 * 117.49906 * 0.02562 * 26 24 23 51 51 H 1.08996 * 109.58784 * 6.61402 * 27 16 14 52 52 H 1.08994 * 109.58645 * 246.32340 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3215 -1.1203 -4.0080 9 1 1.8261 -2.5203 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7211 1.2492 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.6481 -1.4243 3.7828 16 7 1.3470 0.0824 4.7680 17 6 0.5077 1.2834 4.6554 18 6 1.0693 2.3693 5.5787 19 6 1.1852 1.8145 7.0004 20 6 2.1501 0.6265 7.0090 21 1 3.1254 0.9467 6.6426 22 8 2.2814 0.1285 8.3421 23 6 3.5528 -0.4619 8.6193 24 6 3.5801 -0.9581 10.0664 25 6 4.5807 -0.3016 11.0195 26 6 4.8189 -1.7299 10.5253 27 6 1.6008 -0.4790 6.1019 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7090 1.1614 -3.4845 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 -0.5128 1.0426 4.9531 39 1 0.5134 1.6407 3.6257 40 1 0.4002 3.2297 5.5775 41 1 2.0546 2.6734 5.2255 42 1 0.2037 1.4877 7.3438 43 1 1.5615 2.5928 7.6644 44 1 3.7184 -1.3017 7.9444 45 1 4.3376 0.2806 8.4746 46 1 2.6173 -1.2614 10.4775 47 1 5.2198 0.4835 10.6157 48 1 4.2762 -0.1726 12.0582 49 1 4.6711 -2.5405 11.2388 50 1 5.6147 -1.8837 9.7965 51 1 2.3301 -1.2855 6.0262 52 1 0.6707 -0.8652 6.5188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459238863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:07 Heat of formation + Delta-G solvation = -55.732546 kcal Electronic energy + Delta-G solvation = -28434.054879 eV Core-core repulsion = 24627.358068 eV Total energy + Delta-G solvation = -3806.696811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.31848 -38.87005 -37.58223 -36.45308 -35.96648 -33.37136 -32.46244 -30.98827 -30.13189 -27.20244 -25.97127 -25.72462 -25.35778 -24.26375 -22.96630 -22.71838 -21.38827 -20.72807 -19.41663 -18.88761 -18.03029 -17.00512 -16.24649 -15.98876 -15.85964 -15.46801 -14.97407 -14.76796 -14.75081 -14.35626 -14.23079 -13.73165 -13.61259 -13.35095 -13.06866 -12.91918 -12.79520 -12.54684 -12.19221 -11.94665 -11.79021 -11.47897 -11.39680 -11.23767 -11.20260 -11.13427 -10.84581 -10.83233 -10.72317 -10.64752 -10.57963 -10.37802 -10.19652 -9.78485 -9.70661 -9.62704 -9.29866 -8.79609 -8.67287 -8.39330 -8.12685 -6.01530 -4.11344 2.79173 3.26370 3.30694 3.34798 3.38902 3.54116 3.59074 4.26700 4.41361 4.45312 4.54967 4.60583 4.65178 4.66353 4.82229 4.92601 4.98394 5.02989 5.20315 5.25158 5.29199 5.31010 5.38322 5.42629 5.53181 5.60127 5.65433 5.69167 5.74327 5.75454 5.85652 5.93237 6.03968 6.20181 6.37093 6.49920 6.52264 6.79869 6.82070 6.91256 7.03322 7.03830 7.09653 7.24816 7.38942 7.56054 7.70143 8.01370 8.12478 8.37025 8.42350 8.87958 9.01074 9.54193 10.99880 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002329 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.297121 B =12019.047799 C =12791.689038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.732 5.732 14 C 0.702 3.298 15 O -0.598 6.598 16 N -0.632 5.632 17 C 0.109 3.891 18 C -0.132 4.132 19 C -0.113 4.113 20 C 0.078 3.922 21 H 0.064 0.936 22 O -0.376 6.376 23 C 0.091 3.909 24 C -0.152 4.152 25 C -0.179 4.179 26 C -0.175 4.175 27 C 0.112 3.888 28 H 0.004 0.996 29 H 0.085 0.915 30 H 0.027 0.973 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.069 0.931 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.114 0.886 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 3.529 22.831 23.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.388 5.388 14 C 0.404 3.596 15 O -0.477 6.477 16 N -0.373 5.373 17 C -0.015 4.015 18 C -0.171 4.171 19 C -0.151 4.151 20 C 0.019 3.981 21 H 0.082 0.918 22 O -0.295 6.295 23 C 0.014 3.986 24 C -0.170 4.170 25 C -0.216 4.216 26 C -0.212 4.212 27 C -0.012 4.012 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.132 0.868 47 H 0.113 0.887 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.115 0.885 51 H 0.111 0.889 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.969 2.944 22.851 23.060 hybrid contribution 0.247 -0.071 -1.044 1.075 sum 1.216 2.873 21.808 22.030 Atomic orbital electron populations 1.21818 0.97773 0.99181 0.99933 1.18362 0.92795 0.92774 0.90556 1.21818 0.98602 0.98357 0.99911 1.20937 1.31472 1.12088 0.89834 0.92466 1.24879 0.94888 0.94944 0.98837 1.69790 1.36671 1.22732 1.23301 0.86625 0.79230 0.79792 0.82154 1.20290 1.21358 1.20291 1.21606 0.97994 0.95365 0.82442 1.45678 1.55682 1.32943 1.04525 1.15960 0.80647 0.82350 0.80680 1.90866 1.39312 1.31843 1.85662 1.47170 1.54258 1.30401 1.05424 1.21651 0.94316 0.85037 1.00478 1.21920 1.02508 0.98152 0.94482 1.21560 0.99965 0.96550 0.97005 1.22460 0.99255 0.93972 0.82423 0.91766 1.87871 1.34245 1.78117 1.29235 1.22084 0.85489 0.96726 0.94290 1.22136 0.95719 1.04537 0.94586 1.23072 1.02794 0.96016 0.99689 1.22987 0.99273 0.95233 1.03681 1.21781 1.01884 0.96472 0.81100 0.97669 0.89615 0.95425 0.95435 0.89600 0.97712 0.92971 0.92901 0.93000 0.76928 0.91228 0.89910 0.89869 0.91178 0.90820 0.91063 0.92463 0.93162 0.86815 0.88714 0.88661 0.88366 0.88549 0.88913 0.91248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.50 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.98 16 8 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.23 4.51 -4.04 -0.02 3.22 16 13 N -0.73 -13.51 4.87 -65.23 -0.32 -13.83 16 14 C 0.70 12.99 8.29 -86.93 -0.72 12.27 16 15 O -0.60 -13.24 15.77 5.29 0.08 -13.16 16 16 N -0.63 -8.98 2.98 -178.48 -0.53 -9.51 16 17 C 0.11 1.18 6.38 -3.69 -0.02 1.15 16 18 C -0.13 -1.17 6.08 -26.61 -0.16 -1.33 16 19 C -0.11 -1.02 5.54 -26.68 -0.15 -1.17 16 20 C 0.08 0.85 2.76 -26.61 -0.07 0.78 16 21 H 0.06 0.74 7.79 -51.93 -0.40 0.34 16 22 O -0.38 -4.17 9.99 -35.23 -0.35 -4.53 16 23 C 0.09 0.88 6.03 37.16 0.22 1.11 16 24 C -0.15 -1.28 6.06 -90.62 -0.55 -1.83 16 25 C -0.18 -1.28 10.18 -26.73 -0.27 -1.55 16 26 C -0.17 -1.24 10.25 -26.73 -0.27 -1.52 16 27 C 0.11 1.44 6.05 -3.71 -0.02 1.42 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.12 6.07 -51.92 -0.32 1.81 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 33 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 34 H 0.26 6.68 8.31 -40.82 -0.34 6.35 16 35 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.39 6.53 3.66 -40.82 -0.15 6.38 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.91 5.66 -51.93 -0.29 0.62 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.58 8.02 -51.93 -0.42 0.17 16 45 H 0.05 0.46 7.82 -51.93 -0.41 0.06 16 46 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 0.65 8.03 -51.93 -0.42 0.23 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.09 1.37 6.87 -51.93 -0.36 1.02 16 52 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -29.29 399.53 -10.73 -40.02 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -9.25 Total: 5.56 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.89 Total: -3.32 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.33 Total: -46.32 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.27 Total: -17.69 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -29.29 -10.73 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.708 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds