Wall clock time and date at job start Tue Mar 31 2020 14:04:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46826 * 2 1 4 4 C 1.50702 * 109.47345 * 240.00070 * 2 1 3 5 5 H 1.07996 * 119.99500 * 240.00199 * 4 2 1 6 6 C 1.37879 * 119.99942 * 59.99966 * 4 2 1 7 7 N 1.31508 * 120.00200 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99790 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47209 * 59.99398 * 8 6 4 10 10 H 1.48498 * 109.46933 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46834 * 299.99907 * 8 6 4 12 12 C 1.52995 * 109.47333 * 119.99624 * 2 1 3 13 13 N 1.46503 * 109.47378 * 300.00434 * 12 2 1 14 14 C 1.34764 * 120.00417 * 179.97438 * 13 12 2 15 15 O 1.21590 * 120.00175 * 4.98023 * 14 13 12 16 16 N 1.34776 * 120.00231 * 184.98047 * 14 13 12 17 17 C 1.46952 * 120.65396 * 354.59495 * 16 14 13 18 18 C 1.53197 * 108.88867 * 233.53250 * 17 16 14 19 19 C 1.53045 * 109.31151 * 305.43908 * 18 17 16 20 20 C 1.53048 * 109.53494 * 61.36241 * 19 18 17 21 21 H 1.09002 * 109.52170 * 58.60421 * 20 19 18 22 22 O 1.42907 * 109.49597 * 178.68056 * 20 19 18 23 23 C 1.42893 * 113.99930 * 209.84272 * 22 20 19 24 24 C 1.53003 * 109.47030 * 180.02562 * 23 22 20 25 25 C 1.52993 * 117.49627 * 243.62054 * 24 23 22 26 26 C 1.52999 * 117.49828 * 174.99649 * 24 23 22 27 27 C 1.46931 * 120.62891 * 174.76934 * 16 14 13 28 28 H 1.09002 * 109.47345 * 300.00345 * 1 2 3 29 29 H 1.09008 * 109.47296 * 60.00329 * 1 2 3 30 30 H 1.08998 * 109.47285 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47019 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47453 * 299.99299 * 3 2 1 33 33 H 1.08996 * 109.47301 * 60.00117 * 3 2 1 34 34 H 0.97005 * 120.00266 * 180.02562 * 7 6 4 35 35 H 1.09003 * 109.47621 * 180.02562 * 12 2 1 36 36 H 1.09004 * 109.47032 * 59.99621 * 12 2 1 37 37 H 0.97005 * 119.99756 * 359.97438 * 13 12 2 38 38 H 1.09000 * 109.46861 * 113.74964 * 17 16 14 39 39 H 1.08998 * 109.71491 * 353.45631 * 17 16 14 40 40 H 1.08996 * 109.50134 * 185.49124 * 18 17 16 41 41 H 1.08996 * 109.49988 * 65.38789 * 18 17 16 42 42 H 1.09002 * 109.46127 * 301.34586 * 19 18 17 43 43 H 1.09001 * 109.46184 * 181.38329 * 19 18 17 44 44 H 1.09007 * 109.47212 * 300.00000 * 23 22 20 45 45 H 1.08995 * 109.47561 * 59.99853 * 23 22 20 46 46 H 1.08999 * 115.54875 * 29.32884 * 24 23 22 47 47 H 1.08994 * 117.50378 * 359.97438 * 25 24 23 48 48 H 1.09004 * 117.49825 * 145.02108 * 25 24 23 49 49 H 1.09000 * 117.49986 * 214.97731 * 26 24 23 50 50 H 1.09001 * 117.49906 * 0.02562 * 26 24 23 51 51 H 1.08996 * 109.58784 * 6.61402 * 27 16 14 52 52 H 1.08994 * 109.58645 * 246.32340 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6035 8 14 2.3215 -1.1203 -4.0080 9 1 1.8261 -2.5203 -4.0077 10 1 1.8261 -0.4206 -5.2204 11 1 3.8065 -1.1208 -4.0081 12 6 2.0400 -0.7211 1.2492 13 7 1.5516 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.6481 -1.4243 3.7828 16 7 1.3470 0.0824 4.7680 17 6 0.5077 1.2834 4.6554 18 6 1.0693 2.3693 5.5787 19 6 1.1852 1.8145 7.0004 20 6 2.1501 0.6265 7.0090 21 1 3.1254 0.9467 6.6426 22 8 2.2814 0.1285 8.3421 23 6 3.5528 -0.4619 8.6193 24 6 3.5801 -0.9581 10.0664 25 6 4.5807 -0.3016 11.0195 26 6 4.8189 -1.7299 10.5253 27 6 1.6008 -0.4790 6.1019 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6766 1.9564 0.8899 34 1 0.7090 1.1614 -3.4845 35 1 3.1300 -0.7208 1.2495 36 1 1.6766 -1.7488 1.2493 37 1 0.9942 0.7583 2.3564 38 1 -0.5128 1.0426 4.9531 39 1 0.5134 1.6407 3.6257 40 1 0.4002 3.2297 5.5775 41 1 2.0546 2.6734 5.2255 42 1 0.2037 1.4877 7.3438 43 1 1.5615 2.5928 7.6644 44 1 3.7184 -1.3017 7.9444 45 1 4.3376 0.2806 8.4746 46 1 2.6173 -1.2614 10.4775 47 1 5.2198 0.4835 10.6157 48 1 4.2762 -0.1726 12.0582 49 1 4.6711 -2.5405 11.2388 50 1 5.6147 -1.8837 9.7965 51 1 2.3301 -1.2855 6.0262 52 1 0.6707 -0.8652 6.5188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459238863.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:06 Heat of formation + Delta-G solvation = -70.949253 kcal Electronic energy + Delta-G solvation = -28434.714725 eV Core-core repulsion = 24627.358068 eV Total energy + Delta-G solvation = -3807.356657 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.57339 -39.87597 -38.56284 -37.97106 -36.97829 -35.06871 -33.58182 -32.62891 -31.20487 -28.06413 -27.56083 -27.47187 -27.06391 -25.70022 -23.85744 -23.27209 -22.33933 -21.58268 -20.64422 -20.63828 -19.31337 -17.87353 -17.78563 -17.36014 -16.95093 -16.62870 -16.56407 -16.17609 -15.52407 -15.40727 -15.24770 -14.99245 -14.93832 -14.70463 -14.44648 -14.09757 -13.98799 -13.82701 -13.62277 -13.19344 -13.09251 -12.68007 -12.66502 -12.61981 -12.40650 -12.25319 -12.23686 -12.12453 -12.03553 -11.94109 -11.62110 -11.48576 -11.38766 -11.30876 -11.28404 -11.08985 -10.71202 -10.56116 -10.39211 -10.11423 -9.44606 -8.01442 -6.16767 1.44843 1.45695 1.51776 1.59208 2.10349 2.44415 2.49104 2.90145 3.03816 3.22023 3.70384 3.76280 3.85524 3.93830 3.94761 4.01324 4.11949 4.19083 4.28232 4.39455 4.43239 4.49517 4.52351 4.61344 4.64131 4.69328 4.72587 4.75788 4.76978 4.90540 4.97167 4.99539 5.02995 5.05479 5.11256 5.13960 5.19244 5.19903 5.22097 5.32090 5.37787 5.46853 5.60894 5.67688 5.68026 5.91767 6.15612 6.18348 6.21937 6.44364 6.86540 6.99122 7.50433 7.55164 8.97367 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023557 B = 0.002329 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.297121 B =12019.047799 C =12791.689038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.028 3.972 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.166 3.834 13 N -0.724 5.724 14 C 0.698 3.302 15 O -0.641 6.641 16 N -0.624 5.624 17 C 0.100 3.900 18 C -0.125 4.125 19 C -0.108 4.108 20 C 0.083 3.917 21 H 0.055 0.945 22 O -0.382 6.382 23 C 0.089 3.911 24 C -0.167 4.167 25 C -0.172 4.172 26 C -0.172 4.172 27 C 0.111 3.889 28 H 0.035 0.965 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.016 0.984 32 H 0.064 0.936 33 H 0.035 0.965 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.404 0.596 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.113 0.887 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.055 0.945 46 H 0.111 0.889 47 H 0.097 0.903 48 H 0.107 0.893 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.066 0.934 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 4.952 24.380 24.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.042 3.958 13 N -0.382 5.382 14 C 0.399 3.601 15 O -0.524 6.524 16 N -0.363 5.363 17 C -0.022 4.022 18 C -0.163 4.163 19 C -0.145 4.145 20 C 0.024 3.976 21 H 0.073 0.927 22 O -0.300 6.300 23 C 0.012 3.988 24 C -0.185 4.185 25 C -0.209 4.209 26 C -0.209 4.209 27 C -0.013 4.013 28 H 0.054 0.946 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.244 0.756 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.131 0.869 41 H 0.080 0.920 42 H 0.100 0.900 43 H 0.102 0.898 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.129 0.871 47 H 0.116 0.884 48 H 0.125 0.875 49 H 0.128 0.872 50 H 0.115 0.885 51 H 0.084 0.916 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.095 4.412 24.436 24.831 hybrid contribution 0.507 -0.529 -1.458 1.631 sum 0.602 3.883 22.978 23.312 Atomic orbital electron populations 1.21653 0.96975 0.98657 1.00349 1.18363 0.93361 0.93079 0.90090 1.21653 0.97865 0.97776 1.00332 1.21212 1.31790 1.12186 0.91508 0.93823 1.25441 0.95175 0.95635 1.00897 1.69888 1.36874 1.23170 1.23679 0.85823 0.78586 0.78807 0.79607 1.20336 1.20745 1.20346 1.21154 0.96709 0.94646 0.83293 1.45370 1.55885 1.33146 1.03767 1.16109 0.80467 0.82061 0.81429 1.90836 1.41290 1.33860 1.86368 1.47204 1.53576 1.30939 1.04531 1.21995 0.94854 0.84094 1.01278 1.21904 1.02662 0.98186 0.93518 1.21562 0.99724 0.95768 0.97482 1.22415 0.99308 0.93870 0.81992 0.92736 1.87869 1.34956 1.78143 1.29028 1.22148 0.85186 0.96393 0.95052 1.22117 0.96244 1.06100 0.94032 1.23155 1.01787 0.96012 0.99918 1.23078 0.98331 0.95763 1.03699 1.21863 1.01820 0.96711 0.80867 0.94572 0.91725 0.96374 0.96432 0.91694 0.94622 0.92978 0.94773 0.94712 0.75601 0.89092 0.89912 0.86852 0.92032 0.89952 0.89824 0.93679 0.92728 0.87099 0.88441 0.87493 0.87238 0.88550 0.91567 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.08 71.98 0.58 -4.66 16 2 C 0.05 2.41 0.50 -52.93 -0.03 2.38 16 3 C -0.12 -5.25 8.08 71.98 0.58 -4.67 16 4 C -0.53 -28.07 8.01 25.60 0.21 -27.87 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.03 1.50 5.15 84.66 0.44 1.93 16 7 N -0.90 -47.49 9.35 21.45 0.20 -47.29 16 8 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.17 7.32 4.51 86.38 0.39 7.71 16 13 N -0.72 -26.25 4.87 -478.54 -2.33 -28.58 16 14 C 0.70 25.75 8.29 179.06 1.49 27.23 16 15 O -0.64 -29.20 15.77 -4.00 -0.06 -29.26 16 16 N -0.62 -17.00 2.98 -836.85 -2.49 -19.49 16 17 C 0.10 1.87 6.38 86.36 0.55 2.42 16 18 C -0.12 -1.78 6.08 30.68 0.19 -1.59 16 19 C -0.11 -1.63 5.54 30.63 0.17 -1.46 16 20 C 0.08 1.72 2.76 30.67 0.08 1.80 16 21 H 0.05 1.23 7.79 -2.39 -0.02 1.21 16 22 O -0.38 -8.11 9.99 -148.98 -1.49 -9.60 16 23 C 0.09 1.71 6.03 71.98 0.43 2.15 16 24 C -0.17 -2.70 6.06 -10.79 -0.07 -2.77 16 25 C -0.17 -2.20 10.18 30.59 0.31 -1.89 16 26 C -0.17 -2.26 10.25 30.59 0.31 -1.95 16 27 C 0.11 2.81 6.05 86.36 0.52 3.33 16 28 H 0.04 1.33 6.86 -2.39 -0.02 1.31 16 29 H 0.06 3.16 6.07 -2.38 -0.01 3.15 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 33 H 0.03 1.31 6.86 -2.39 -0.02 1.29 16 34 H 0.26 13.31 8.31 -92.70 -0.77 12.54 16 35 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.40 12.62 3.66 -92.70 -0.34 12.28 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.57 5.66 -2.39 -0.01 1.56 16 40 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.04 0.96 8.02 -2.38 -0.02 0.94 16 45 H 0.05 0.99 7.82 -2.39 -0.02 0.97 16 46 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.10 1.19 8.03 -2.39 -0.02 1.17 16 48 H 0.11 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 51 H 0.07 2.03 6.87 -2.39 -0.02 2.02 16 52 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -63.82 399.53 2.56 -61.26 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.55 Total: 26.19 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: 6.16 Total: 2.10 kcal Atomic # 7 Polarization: -90.74 SS G_CDS: -4.62 Total: -95.37 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -1.55 Total: -38.86 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -63.82 2.56 -61.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459238863.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.689 kcal (2) G-P(sol) polarization free energy of solvation -63.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds