Wall clock time and date at job start Tue Mar 31 2020 14:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00576 * 2 1 3 5 5 H 1.08004 * 120.00110 * 240.00082 * 4 2 1 6 6 C 1.37878 * 120.00098 * 59.99444 * 4 2 1 7 7 N 1.31519 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47310 * 60.00411 * 8 6 4 10 10 H 1.48504 * 109.47313 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47269 * 300.00197 * 8 6 4 12 12 C 1.52991 * 109.47288 * 120.00592 * 2 1 3 13 13 N 1.46499 * 109.47179 * 299.99587 * 12 2 1 14 14 C 1.34776 * 120.00406 * 179.97438 * 13 12 2 15 15 O 1.21585 * 119.99685 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00031 * 179.97438 * 14 13 12 17 17 C 1.47018 * 125.64981 * 0.03019 * 16 14 13 18 18 C 1.54325 * 107.40412 * 178.82520 * 17 16 14 19 19 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 20 20 H 1.09000 * 110.89538 * 277.26533 * 19 18 17 21 21 C 1.52998 * 111.06990 * 153.48436 * 19 18 17 22 22 C 1.53178 * 109.54294 * 185.76578 * 21 19 18 23 23 C 1.53094 * 109.16345 * 183.15337 * 22 21 19 24 24 O 1.42902 * 109.41232 * 57.60981 * 23 22 21 25 25 C 1.42894 * 114.10041 * 298.83813 * 24 23 22 26 26 C 1.53101 * 109.41487 * 61.16062 * 25 24 23 27 27 C 1.47426 * 125.64500 * 179.97438 * 16 14 13 28 28 H 1.09003 * 109.46657 * 299.99782 * 1 2 3 29 29 H 1.08995 * 109.47121 * 59.99589 * 1 2 3 30 30 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47598 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47444 * 300.00213 * 3 2 1 33 33 H 1.09003 * 109.47163 * 60.00528 * 3 2 1 34 34 H 0.96991 * 119.99857 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47412 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47604 * 59.99664 * 12 2 1 37 37 H 0.97007 * 119.99933 * 0.02562 * 13 12 2 38 38 H 1.09002 * 109.88241 * 298.32048 * 17 16 14 39 39 H 1.09000 * 109.88049 * 59.33177 * 17 16 14 40 40 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 41 41 H 1.09002 * 110.72265 * 219.52294 * 18 17 16 42 42 H 1.08999 * 109.54710 * 306.03261 * 21 19 18 43 43 H 1.08994 * 109.52566 * 303.05965 * 22 21 19 44 44 H 1.09000 * 109.52374 * 63.25220 * 22 21 19 45 45 H 1.08992 * 109.48306 * 297.62880 * 23 22 21 46 46 H 1.09002 * 109.47956 * 177.59422 * 23 22 21 47 47 H 1.08997 * 109.48492 * 301.18376 * 25 24 23 48 48 H 1.08994 * 109.49584 * 181.14848 * 25 24 23 49 49 H 1.08994 * 109.52670 * 182.48419 * 26 25 24 50 50 H 1.09002 * 109.57261 * 62.32655 * 26 25 24 51 51 H 1.08999 * 110.36956 * 323.01018 * 27 16 14 52 52 H 1.09001 * 110.36709 * 85.22211 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8267 -0.4196 -5.2206 11 1 3.8062 -1.1206 -4.0084 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7699 17 6 0.5799 1.3447 4.7799 18 6 0.2949 1.6963 6.2552 19 6 0.5353 0.3452 6.9845 20 1 -0.3475 -0.2913 6.9246 21 6 0.9467 0.5718 8.4407 22 6 1.3131 -0.7692 9.0841 23 6 1.6471 -0.5433 10.5610 24 8 0.5304 0.0653 11.2128 25 6 0.1719 1.3436 10.6843 26 6 -0.2214 1.1936 9.2123 27 6 1.7058 -0.2503 6.1631 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 0.7093 1.1619 -3.4843 35 1 3.1300 -0.7209 1.2493 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7577 2.3564 38 1 1.1010 2.1708 4.2959 39 1 -0.3562 1.1415 4.2597 40 1 0.9907 2.4557 6.6121 41 1 -0.7362 2.0269 6.3807 42 1 1.8055 1.2419 8.4770 43 1 0.4700 -1.4550 9.0021 44 1 2.1792 -1.1926 8.5755 45 1 2.5155 0.1105 10.6415 46 1 1.8672 -1.5001 11.0344 47 1 1.0210 2.0220 10.7662 48 1 -0.6707 1.7462 11.2464 49 1 -0.4528 2.1736 8.7953 50 1 -1.0959 0.5478 9.1319 51 1 1.7195 -1.3364 6.2544 52 1 2.6557 0.1694 6.4940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459254125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:22 Heat of formation + Delta-G solvation = -94.364588 kcal Electronic energy + Delta-G solvation = -28481.713928 eV Core-core repulsion = 24673.341906 eV Total energy + Delta-G solvation = -3808.372022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.42551 -39.48592 -37.75379 -36.24487 -34.53665 -33.19629 -31.57326 -31.16226 -30.34886 -28.95648 -25.90351 -25.71358 -25.29389 -24.30761 -24.05465 -22.66374 -21.03367 -20.32253 -19.63486 -18.78919 -17.89425 -16.86391 -16.33797 -15.88064 -15.84275 -15.40656 -15.25419 -14.86888 -14.61459 -14.44240 -14.18014 -13.74050 -13.58242 -13.22758 -13.03375 -12.93785 -12.69014 -12.52926 -12.36355 -12.17099 -11.81568 -11.71239 -11.63786 -11.41900 -11.36195 -11.17558 -10.90481 -10.83286 -10.71865 -10.59627 -10.57171 -10.36846 -10.19731 -9.85228 -9.73838 -9.61652 -9.29548 -8.78575 -8.64648 -8.38601 -8.10222 -6.00838 -4.10675 2.93425 3.31171 3.35149 3.39298 3.53100 3.62255 4.04889 4.24256 4.33463 4.37851 4.51173 4.59477 4.62830 4.76738 4.85940 4.91644 4.96867 5.08005 5.18941 5.25776 5.25803 5.32686 5.37187 5.44473 5.48782 5.53652 5.60469 5.67423 5.74141 5.76032 5.84457 5.90515 6.10040 6.17519 6.38275 6.41015 6.52586 6.81620 6.83819 6.83857 6.94897 7.04473 7.12236 7.35871 7.44383 7.57092 7.70911 8.02193 8.13622 8.39263 8.45871 8.88852 9.05758 9.54823 11.00629 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.002152 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.613733 B =13006.538841 C =13472.447191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.730 5.730 14 C 0.715 3.285 15 O -0.598 6.598 16 N -0.643 5.643 17 C 0.099 3.901 18 C -0.123 4.123 19 C -0.096 4.096 20 H 0.086 0.914 21 C -0.076 4.076 22 C -0.155 4.155 23 C 0.060 3.940 24 O -0.385 6.385 25 C 0.060 3.940 26 C -0.150 4.150 27 C 0.133 3.867 28 H 0.004 0.996 29 H 0.085 0.915 30 H 0.026 0.974 31 H 0.026 0.974 32 H 0.085 0.915 33 H 0.004 0.996 34 H 0.260 0.740 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.393 0.607 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.078 0.922 45 H 0.050 0.950 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.092 0.908 49 H 0.075 0.925 50 H 0.073 0.927 51 H 0.075 0.925 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.421 4.929 24.294 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.543 4.543 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.384 5.384 14 C 0.417 3.583 15 O -0.477 6.477 16 N -0.383 5.383 17 C -0.025 4.025 18 C -0.161 4.161 19 C -0.115 4.115 20 H 0.104 0.896 21 C -0.095 4.095 22 C -0.192 4.192 23 C -0.016 4.016 24 O -0.304 6.304 25 C -0.017 4.017 26 C -0.188 4.188 27 C 0.010 3.990 28 H 0.023 0.977 29 H 0.104 0.896 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.104 0.896 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.100 0.900 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.111 0.889 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.094 0.906 50 H 0.091 0.909 51 H 0.094 0.906 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.038 4.173 24.234 24.778 hybrid contribution 0.171 0.123 -1.253 1.270 sum -2.867 4.296 22.981 23.555 Atomic orbital electron populations 1.21815 0.97797 0.99148 0.99928 1.18358 0.92790 0.92776 0.90540 1.21814 0.98579 0.98367 0.99928 1.20946 1.31451 1.12086 0.89844 0.92453 1.24883 0.94886 0.94949 0.98840 1.69795 1.36705 1.22744 1.23293 0.86622 0.79231 0.79788 0.82139 1.20281 1.21359 1.20288 1.21598 0.97883 0.95439 0.82391 1.45518 1.55507 1.33024 1.04400 1.15601 0.80318 0.82442 0.79925 1.90881 1.43397 1.27754 1.85639 1.47553 1.55197 1.30380 1.05163 1.21950 0.94860 0.88047 0.97616 1.22704 1.02478 0.97216 0.93671 1.22468 0.98723 0.97000 0.93325 0.89589 1.21133 0.98253 0.96952 0.93163 1.22295 1.03011 0.97749 0.96188 1.22592 0.88367 0.98234 0.92427 1.87933 1.50217 1.33616 1.58640 1.22578 1.00014 0.85202 0.93869 1.22243 0.98841 1.01994 0.95701 1.21995 0.96871 1.00475 0.79696 0.97673 0.89619 0.95448 0.95450 0.89623 0.97666 0.92980 0.92963 0.92961 0.77160 0.91667 0.91681 0.90516 0.90018 0.90652 0.90753 0.90356 0.93207 0.88861 0.93263 0.88971 0.90598 0.90857 0.90617 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.32 0.50 -155.67 -0.08 1.24 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.50 -13.35 8.01 -34.44 -0.28 -13.62 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 8 Si 0.89 20.86 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.31 4.50 -4.05 -0.02 3.30 16 13 N -0.73 -13.87 4.92 -65.23 -0.32 -14.19 16 14 C 0.72 13.62 8.49 -86.92 -0.74 12.88 16 15 O -0.60 -13.64 16.60 5.29 0.09 -13.55 16 16 N -0.64 -9.24 3.33 -176.24 -0.59 -9.83 16 17 C 0.10 1.06 6.14 -3.07 -0.02 1.04 16 18 C -0.12 -0.93 5.68 -24.76 -0.14 -1.07 16 19 C -0.10 -0.78 2.56 -88.34 -0.23 -1.01 16 20 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 21 C -0.08 -0.51 1.79 -90.44 -0.16 -0.67 16 22 C -0.15 -1.09 5.16 -26.59 -0.14 -1.23 16 23 C 0.06 0.42 6.84 37.21 0.25 0.68 16 24 O -0.39 -3.36 10.76 -35.23 -0.38 -3.74 16 25 C 0.06 0.38 6.84 37.21 0.25 0.64 16 26 C -0.15 -0.90 5.22 -26.59 -0.14 -1.04 16 27 C 0.13 1.55 5.40 -2.53 -0.01 1.53 16 28 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 29 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 33 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 34 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 37 H 0.39 6.80 5.15 -40.82 -0.21 6.59 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.52 8.03 -51.93 -0.42 0.10 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.55 7.47 -51.93 -0.39 0.17 16 45 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 49 H 0.08 0.37 7.62 -51.93 -0.40 -0.02 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.98 8.01 -51.93 -0.42 0.56 16 52 H 0.06 0.68 8.04 -51.93 -0.42 0.26 16 LS Contribution 392.60 15.07 5.92 5.92 Total: -1.00 -30.47 392.60 -10.18 -40.65 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -9.47 Total: 3.07 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.93 Total: -0.98 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.39 Total: -47.20 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -0.29 Total: -17.29 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.47 -10.18 -40.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459254125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.711 kcal (2) G-P(sol) polarization free energy of solvation -30.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds