Wall clock time and date at job start Tue Mar 31 2020 14:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47150 * 2 1 4 4 C 1.50701 * 109.47011 * 240.00576 * 2 1 3 5 5 H 1.08004 * 120.00110 * 240.00082 * 4 2 1 6 6 C 1.37878 * 120.00098 * 59.99444 * 4 2 1 7 7 N 1.31519 * 120.00242 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47310 * 60.00411 * 8 6 4 10 10 H 1.48504 * 109.47313 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47269 * 300.00197 * 8 6 4 12 12 C 1.52991 * 109.47288 * 120.00592 * 2 1 3 13 13 N 1.46499 * 109.47179 * 299.99587 * 12 2 1 14 14 C 1.34776 * 120.00406 * 179.97438 * 13 12 2 15 15 O 1.21585 * 119.99685 * 0.02562 * 14 13 12 16 16 N 1.34777 * 120.00031 * 179.97438 * 14 13 12 17 17 C 1.47018 * 125.64981 * 0.03019 * 16 14 13 18 18 C 1.54325 * 107.40412 * 178.82520 * 17 16 14 19 19 C 1.55405 * 102.82616 * 337.97548 * 18 17 16 20 20 H 1.09000 * 110.89538 * 277.26533 * 19 18 17 21 21 C 1.52998 * 111.06990 * 153.48436 * 19 18 17 22 22 C 1.53178 * 109.54294 * 185.76578 * 21 19 18 23 23 C 1.53094 * 109.16345 * 183.15337 * 22 21 19 24 24 O 1.42902 * 109.41232 * 57.60981 * 23 22 21 25 25 C 1.42894 * 114.10041 * 298.83813 * 24 23 22 26 26 C 1.53101 * 109.41487 * 61.16062 * 25 24 23 27 27 C 1.47426 * 125.64500 * 179.97438 * 16 14 13 28 28 H 1.09003 * 109.46657 * 299.99782 * 1 2 3 29 29 H 1.08995 * 109.47121 * 59.99589 * 1 2 3 30 30 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47598 * 180.02562 * 3 2 1 32 32 H 1.08995 * 109.47444 * 300.00213 * 3 2 1 33 33 H 1.09003 * 109.47163 * 60.00528 * 3 2 1 34 34 H 0.96991 * 119.99857 * 179.97438 * 7 6 4 35 35 H 1.09000 * 109.47412 * 180.02562 * 12 2 1 36 36 H 1.08999 * 109.47604 * 59.99664 * 12 2 1 37 37 H 0.97007 * 119.99933 * 0.02562 * 13 12 2 38 38 H 1.09002 * 109.88241 * 298.32048 * 17 16 14 39 39 H 1.09000 * 109.88049 * 59.33177 * 17 16 14 40 40 H 1.09000 * 110.72188 * 96.24097 * 18 17 16 41 41 H 1.09002 * 110.72265 * 219.52294 * 18 17 16 42 42 H 1.08999 * 109.54710 * 306.03261 * 21 19 18 43 43 H 1.08994 * 109.52566 * 303.05965 * 22 21 19 44 44 H 1.09000 * 109.52374 * 63.25220 * 22 21 19 45 45 H 1.08992 * 109.48306 * 297.62880 * 23 22 21 46 46 H 1.09002 * 109.47956 * 177.59422 * 23 22 21 47 47 H 1.08997 * 109.48492 * 301.18376 * 25 24 23 48 48 H 1.08994 * 109.49584 * 181.14848 * 25 24 23 49 49 H 1.08994 * 109.52670 * 182.48419 * 26 25 24 50 50 H 1.09002 * 109.57261 * 62.32655 * 26 25 24 51 51 H 1.08999 * 110.36956 * 323.01018 * 27 16 14 52 52 H 1.09001 * 110.36709 * 85.22211 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6991 -0.2392 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3212 -1.1201 -4.0081 9 1 1.8257 -2.5199 -4.0080 10 1 1.8267 -0.4196 -5.2206 11 1 3.8062 -1.1206 -4.0084 12 6 2.0400 -0.7213 1.2491 13 7 1.5518 -0.0308 2.4453 14 6 1.8770 -0.4916 3.6694 15 8 2.5760 -1.4802 3.7809 16 7 1.4282 0.1440 4.7699 17 6 0.5799 1.3447 4.7799 18 6 0.2949 1.6963 6.2552 19 6 0.5353 0.3452 6.9845 20 1 -0.3475 -0.2913 6.9246 21 6 0.9467 0.5718 8.4407 22 6 1.3131 -0.7692 9.0841 23 6 1.6471 -0.5433 10.5610 24 8 0.5304 0.0653 11.2128 25 6 0.1719 1.3436 10.6843 26 6 -0.2214 1.1936 9.2123 27 6 1.7058 -0.2503 6.1631 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 3.1301 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8899 33 1 1.6768 1.9563 0.8901 34 1 0.7093 1.1619 -3.4843 35 1 3.1300 -0.7209 1.2493 36 1 1.6767 -1.7490 1.2491 37 1 0.9938 0.7577 2.3564 38 1 1.1010 2.1708 4.2959 39 1 -0.3562 1.1415 4.2597 40 1 0.9907 2.4557 6.6121 41 1 -0.7362 2.0269 6.3807 42 1 1.8055 1.2419 8.4770 43 1 0.4700 -1.4550 9.0021 44 1 2.1792 -1.1926 8.5755 45 1 2.5155 0.1105 10.6415 46 1 1.8672 -1.5001 11.0344 47 1 1.0210 2.0220 10.7662 48 1 -0.6707 1.7462 11.2464 49 1 -0.4528 2.1736 8.7953 50 1 -1.0959 0.5478 9.1319 51 1 1.7195 -1.3364 6.2544 52 1 2.6557 0.1694 6.4940 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459254125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:21 Heat of formation + Delta-G solvation = -111.936899 kcal Electronic energy + Delta-G solvation = -28482.475921 eV Core-core repulsion = 24673.341906 eV Total energy + Delta-G solvation = -3809.134015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.46450 -40.39774 -38.86765 -37.93658 -35.42329 -34.88979 -32.80336 -32.10053 -31.44859 -29.80265 -27.58072 -27.50952 -26.95188 -25.47028 -24.64863 -23.60012 -21.69682 -21.03055 -20.90662 -20.59623 -19.20737 -17.81069 -17.61302 -16.87950 -16.83022 -16.79539 -16.64458 -16.01964 -15.53751 -15.48601 -15.22686 -14.83645 -14.74616 -14.60814 -14.34930 -14.04121 -13.87246 -13.74015 -13.42684 -13.18938 -13.14254 -13.08870 -12.68238 -12.62817 -12.48220 -12.34343 -12.25944 -12.16371 -12.13553 -12.02593 -11.55077 -11.49986 -11.40020 -11.19147 -11.15373 -11.07944 -10.72560 -10.40280 -10.37783 -10.13291 -9.45005 -8.02400 -6.17988 1.44532 1.45221 1.51851 1.66657 2.13624 2.45899 3.04059 3.10610 3.21023 3.46008 3.60206 3.68229 4.01312 4.07882 4.17909 4.22811 4.31887 4.38067 4.38616 4.41840 4.50722 4.59980 4.62571 4.67017 4.68995 4.83502 4.85054 4.86930 4.90643 4.96026 4.98443 4.99913 5.03727 5.07327 5.10546 5.18106 5.19994 5.26215 5.27940 5.36287 5.39465 5.52306 5.60486 5.65810 5.66862 6.08340 6.13460 6.20480 6.33985 6.43021 6.85360 7.01707 7.49342 7.57236 8.96596 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.037544 B = 0.002152 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.613733 B =13006.538841 C =13472.447191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.709 3.291 15 O -0.643 6.643 16 N -0.639 5.639 17 C 0.088 3.912 18 C -0.111 4.111 19 C -0.082 4.082 20 H 0.082 0.918 21 C -0.070 4.070 22 C -0.154 4.154 23 C 0.059 3.941 24 O -0.408 6.408 25 C 0.054 3.946 26 C -0.144 4.144 27 C 0.127 3.873 28 H 0.033 0.967 29 H 0.064 0.936 30 H 0.017 0.983 31 H 0.017 0.983 32 H 0.064 0.936 33 H 0.034 0.966 34 H 0.261 0.739 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.404 0.596 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.094 0.906 50 H 0.066 0.934 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.273 6.718 25.686 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.172 4.172 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.379 5.379 14 C 0.411 3.589 15 O -0.526 6.526 16 N -0.377 5.377 17 C -0.034 4.034 18 C -0.148 4.148 19 C -0.101 4.101 20 H 0.100 0.900 21 C -0.089 4.089 22 C -0.192 4.192 23 C -0.017 4.017 24 O -0.328 6.328 25 C -0.022 4.022 26 C -0.182 4.182 27 C 0.004 3.996 28 H 0.052 0.948 29 H 0.083 0.917 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.052 0.948 37 H 0.240 0.760 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.077 0.923 48 H 0.120 0.880 49 H 0.113 0.887 50 H 0.084 0.916 51 H 0.074 0.926 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.925 6.010 25.666 26.651 hybrid contribution 0.436 -0.435 -1.619 1.732 sum -3.489 5.575 24.047 24.931 Atomic orbital electron populations 1.21650 0.97073 0.98602 1.00274 1.18358 0.93298 0.93087 0.90112 1.21647 0.97885 0.97776 1.00279 1.21218 1.31828 1.12214 0.91495 0.93767 1.25456 0.95138 0.95630 1.00945 1.69892 1.36899 1.23203 1.23715 0.85802 0.78609 0.78791 0.79508 1.20304 1.20705 1.20289 1.21147 0.96653 0.94658 0.83251 1.45212 1.55741 1.33156 1.03757 1.15763 0.80159 0.82247 0.80732 1.90843 1.45451 1.29884 1.86417 1.47607 1.54455 1.30879 1.04806 1.22284 0.94318 0.86506 1.00323 1.22733 1.04441 0.96820 0.90834 1.22366 0.96865 0.97184 0.93713 0.89977 1.21098 0.99003 0.96814 0.91993 1.22272 1.02471 0.97974 0.96495 1.22646 0.88322 0.98648 0.92108 1.87904 1.50738 1.34753 1.59376 1.22750 1.00823 0.84484 0.94151 1.22203 0.97940 1.02671 0.95376 1.22213 0.98880 0.99717 0.78804 0.94762 0.91673 0.96399 0.96365 0.91686 0.94740 0.92958 0.94725 0.94778 0.75950 0.91036 0.91285 0.88889 0.87553 0.89827 0.91736 0.90755 0.92342 0.88565 0.92340 0.87981 0.88728 0.91553 0.92596 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.32 8.08 71.98 0.58 -4.74 16 4 C -0.53 -28.38 8.01 25.60 0.21 -28.17 16 5 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.94 9.35 21.45 0.20 -47.74 16 8 Si 0.95 42.87 29.54 68.60 2.03 44.90 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 12 C 0.17 7.51 4.50 86.38 0.39 7.90 16 13 N -0.72 -27.08 4.92 -478.55 -2.35 -29.44 16 14 C 0.71 26.94 8.49 179.05 1.52 28.46 16 15 O -0.64 -30.06 16.60 -3.98 -0.07 -30.13 16 16 N -0.64 -17.61 3.33 -829.76 -2.76 -20.37 16 17 C 0.09 1.64 6.14 86.73 0.53 2.18 16 18 C -0.11 -1.24 5.68 31.87 0.18 -1.06 16 19 C -0.08 -1.14 2.56 -9.32 -0.02 -1.17 16 20 H 0.08 1.25 8.14 -2.39 -0.02 1.24 16 21 C -0.07 -0.77 1.79 -10.67 -0.02 -0.79 16 22 C -0.15 -2.02 5.16 30.69 0.16 -1.86 16 23 C 0.06 0.76 6.84 72.01 0.49 1.25 16 24 O -0.41 -6.51 10.76 -148.98 -1.60 -8.11 16 25 C 0.05 0.56 6.84 72.02 0.49 1.05 16 26 C -0.14 -1.29 5.22 30.69 0.16 -1.13 16 27 C 0.13 2.81 5.40 86.85 0.47 3.28 16 28 H 0.03 1.30 6.86 -2.39 -0.02 1.28 16 29 H 0.06 3.23 6.07 -2.39 -0.01 3.22 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 33 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 34 H 0.26 13.41 8.31 -92.72 -0.77 12.64 16 35 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.40 13.22 5.15 -92.70 -0.48 12.74 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.09 0.82 8.03 -2.39 -0.02 0.80 16 41 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.08 0.83 8.12 -2.39 -0.02 0.81 16 43 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 1.02 7.47 -2.39 -0.02 1.00 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.09 0.52 7.62 -2.39 -0.02 0.50 16 50 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 51 H 0.06 1.46 8.01 -2.39 -0.02 1.44 16 52 H 0.07 1.41 8.04 -2.39 -0.02 1.39 16 Total: -1.00 -66.69 392.60 1.98 -64.71 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.40 Total: 21.36 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.13 Total: 4.81 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -4.91 Total: -97.54 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -1.67 Total: -38.24 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -66.69 1.98 -64.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459254125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.224 kcal (2) G-P(sol) polarization free energy of solvation -66.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds