Wall clock time and date at job start Tue Mar 31 2020 14:53:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52994 * 109.47345 * 2 1
4 4 C 1.52996 * 109.46923 * 239.99860 * 2 1 3
5 5 O 1.45199 * 109.46884 * 120.00131 * 2 1 3
6 6 C 1.34643 * 117.00145 * 59.99746 * 5 2 1
7 7 O 1.21515 * 119.99743 * 359.97438 * 6 5 2
8 8 N 1.34777 * 120.00024 * 179.97438 * 6 5 2
9 9 C 1.47425 * 125.64655 * 359.97338 * 8 6 5
10 10 C 1.54914 * 104.82599 * 155.92130 * 9 8 6
11 11 C 1.55149 * 101.58314 * 37.00907 * 10 9 8
12 12 H 1.09004 * 110.72156 * 83.04242 * 11 10 9
13 13 C 1.53004 * 110.71847 * 206.13136 * 11 10 9
14 14 H 1.08999 * 109.70137 * 53.96990 * 13 11 10
15 15 C 1.53631 * 109.66514 * 174.55820 * 13 11 10
16 16 C 1.53035 * 109.24191 * 174.54816 * 15 13 11
17 17 C 1.53034 * 109.54399 * 298.51320 * 16 15 13
18 18 C 1.53195 * 109.30856 * 61.36135 * 17 16 15
19 19 N 1.46918 * 109.58941 * 293.61268 * 13 11 10
20 20 C 1.36938 * 120.63050 * 6.62517 * 19 13 11
21 21 H 1.07995 * 119.99928 * 327.11713 * 20 19 13
22 22 C 1.38810 * 120.00036 * 147.11401 * 20 19 13
23 23 N 1.31618 * 120.00023 * 337.58768 * 22 20 19
24 24 Si 1.86801 * 120.00277 * 157.58788 * 22 20 19
25 25 H 1.48504 * 109.46832 * 0.02562 * 24 22 20
26 26 H 1.48492 * 109.47404 * 240.00017 * 24 22 20
27 27 H 1.48499 * 109.47020 * 119.99844 * 24 22 20
28 28 C 1.47018 * 125.64560 * 180.02562 * 8 6 5
29 29 H 1.09007 * 109.46797 * 300.00158 * 1 2 3
30 30 H 1.08999 * 109.47252 * 59.99607 * 1 2 3
31 31 H 1.08998 * 109.47354 * 179.97438 * 1 2 3
32 32 H 1.08998 * 109.47033 * 179.97438 * 3 2 1
33 33 H 1.08999 * 109.47266 * 300.00384 * 3 2 1
34 34 H 1.09007 * 109.47303 * 60.00151 * 3 2 1
35 35 H 1.08998 * 109.47353 * 300.00303 * 4 2 1
36 36 H 1.09005 * 109.46984 * 59.99882 * 4 2 1
37 37 H 1.09003 * 109.47066 * 179.97438 * 4 2 1
38 38 H 1.08990 * 110.36657 * 37.08148 * 9 8 6
39 39 H 1.09005 * 110.45985 * 274.80216 * 9 8 6
40 40 H 1.08997 * 111.00179 * 278.93285 * 10 9 8
41 41 H 1.09003 * 111.03525 * 155.10159 * 10 9 8
42 42 H 1.08999 * 109.62997 * 54.56152 * 15 13 11
43 43 H 1.09003 * 109.45750 * 294.43801 * 15 13 11
44 44 H 1.09001 * 109.45736 * 178.48898 * 16 15 13
45 45 H 1.09003 * 109.44810 * 58.52934 * 16 15 13
46 46 H 1.08995 * 109.49603 * 301.41954 * 17 16 15
47 47 H 1.08991 * 109.52631 * 181.33114 * 17 16 15
48 48 H 1.09005 * 109.58620 * 185.57578 * 18 17 16
49 49 H 1.09001 * 109.58470 * 65.15915 * 18 17 16
50 50 H 0.97000 * 120.00305 * 354.57859 * 23 22 20
51 51 H 1.08995 * 109.88677 * 61.58871 * 28 8 6
52 52 H 1.09002 * 109.87964 * 300.42512 * 28 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0400 -0.7213 -1.2492
5 8 2.0140 -0.6845 1.1855
6 6 1.6521 -1.9724 1.3383
7 8 0.9507 -2.5095 0.5040
8 7 2.0679 -2.6658 2.4167
9 6 2.9186 -2.1407 3.5002
10 6 2.6020 -3.0378 4.7228
11 6 2.4171 -4.4245 4.0522
12 1 3.3812 -4.9073 3.8924
13 6 1.5010 -5.3151 4.8940
14 1 0.5616 -4.7972 5.0874
15 6 1.2251 -6.6277 4.1448
16 6 0.4222 -7.5654 5.0492
17 6 1.2373 -7.8893 6.3033
18 6 1.5161 -6.5952 7.0744
19 7 2.1591 -5.6339 6.1682
20 6 3.3465 -5.0421 6.5075
21 1 4.0620 -4.7879 5.7395
22 6 3.6304 -4.7687 7.8384
23 7 2.6510 -4.6534 8.7100
24 14 5.4026 -4.5645 8.3926
25 1 6.3084 -4.7397 7.2289
26 1 5.7191 -5.5839 9.4248
27 1 5.5891 -3.2067 8.9643
28 6 1.7491 -4.0714 2.7066
29 1 -0.3633 0.5139 0.8900
30 1 -0.3634 0.5139 -0.8899
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1301 1.4424 0.0005
33 1 1.6767 1.9563 -0.8899
34 1 1.6768 1.9563 0.8900
35 1 1.6766 -1.7489 -1.2492
36 1 1.6766 -0.2074 -2.1392
37 1 3.1300 -0.7209 -1.2495
38 1 2.6625 -1.1032 3.7145
39 1 3.9718 -2.2232 3.2318
40 1 1.6844 -2.7167 5.2158
41 1 3.4359 -3.0512 5.4247
42 1 2.1692 -7.1014 3.8762
43 1 0.6538 -6.4166 3.2408
44 1 0.2013 -8.4875 4.5115
45 1 -0.5107 -7.0809 5.3375
46 1 2.1813 -8.3511 6.0143
47 1 0.6750 -8.5758 6.9360
48 1 2.1788 -6.8057 7.9139
49 1 0.5779 -6.1796 7.4420
50 1 1.7290 -4.6810 8.4100
51 1 2.1438 -4.7114 1.9175
52 1 0.6693 -4.1982 2.7841
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000495666090.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:53:53
Heat of formation + Delta-G solvation = -83.579690 kcal
Electronic energy + Delta-G solvation = -29745.771915 eV
Core-core repulsion = 25937.867562 eV
Total energy + Delta-G solvation = -3807.904354 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.93 seconds
Orbital eigenvalues (eV)
-41.91135 -40.47847 -38.79476 -37.46568 -35.16672 -35.13946 -33.75254 -31.57821
-31.08216 -29.37434 -28.36273 -28.28905 -26.86986 -25.54475 -23.72194 -23.27171
-22.54146 -21.14608 -20.77784 -20.37987 -19.11437 -18.73669 -17.88425 -17.51729
-16.99333 -16.15475 -15.89599 -15.68852 -15.42376 -15.17052 -15.11167 -15.01373
-14.70542 -14.53467 -14.23264 -13.98059 -13.82107 -13.44371 -13.34289 -13.32704
-13.06459 -12.95031 -12.87386 -12.85980 -12.58547 -12.45693 -12.33635 -12.26735
-12.06682 -11.98507 -11.85105 -11.65151 -11.59891 -11.47765 -11.39098 -11.18145
-11.10766 -10.78251 -10.32420 -9.81248 -8.75354 -8.02881 -5.28014 1.05432
1.64562 1.70353 1.70747 1.84758 2.71763 2.86794 3.28179 3.42267
3.71245 3.75401 3.77306 3.80556 3.94818 3.98440 4.09568 4.18080
4.25358 4.28384 4.37359 4.46352 4.49565 4.56263 4.61628 4.63914
4.69920 4.71909 4.76254 4.78493 4.83632 4.87649 4.88769 4.96867
5.04005 5.06108 5.10997 5.15311 5.20930 5.27675 5.28318 5.31179
5.34101 5.34578 5.42372 5.43609 5.46670 5.65155 6.06334 6.40647
6.54111 7.19143 7.22347 7.91152 8.39977 9.17693
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.015458 B = 0.003511 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1810.906422 B = 7972.548795 C = 9281.005766
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.179 4.179
2 C 0.121 3.879
3 C -0.134 4.134
4 C -0.178 4.178
5 O -0.367 6.367
6 C 0.663 3.337
7 O -0.592 6.592
8 N -0.604 5.604
9 C 0.108 3.892
10 C -0.106 4.106
11 C -0.073 4.073
12 H 0.083 0.917
13 C 0.184 3.816
14 H 0.009 0.991
15 C -0.126 4.126
16 C -0.106 4.106
17 C -0.128 4.128
18 C 0.159 3.841
19 N -0.607 5.607
20 C -0.323 4.323
21 H 0.065 0.935
22 C -0.074 4.074
23 N -0.952 5.952
24 Si 1.105 2.895
25 H -0.269 1.269
26 H -0.298 1.298
27 H -0.296 1.296
28 C 0.142 3.858
29 H 0.057 0.943
30 H 0.095 0.905
31 H 0.059 0.941
32 H 0.069 0.931
33 H 0.106 0.894
34 H 0.066 0.934
35 H 0.060 0.940
36 H 0.094 0.906
37 H 0.061 0.939
38 H 0.082 0.918
39 H 0.082 0.918
40 H 0.046 0.954
41 H 0.091 0.909
42 H 0.059 0.941
43 H 0.073 0.927
44 H 0.076 0.924
45 H 0.050 0.950
46 H 0.053 0.947
47 H 0.066 0.934
48 H 0.039 0.961
49 H -0.003 1.003
50 H 0.253 0.747
51 H 0.076 0.924
52 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.375 6.643 -17.204 18.493
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.237 4.237
2 C 0.085 3.915
3 C -0.191 4.191
4 C -0.235 4.235
5 O -0.282 6.282
6 C 0.419 3.581
7 O -0.484 6.484
8 N -0.345 5.345
9 C -0.014 4.014
10 C -0.144 4.144
11 C -0.092 4.092
12 H 0.101 0.899
13 C 0.078 3.922
14 H 0.026 0.974
15 C -0.165 4.165
16 C -0.143 4.143
17 C -0.167 4.167
18 C 0.033 3.967
19 N -0.332 5.332
20 C -0.453 4.453
21 H 0.083 0.917
22 C -0.271 4.271
23 N -0.595 5.595
24 Si 0.932 3.068
25 H -0.193 1.193
26 H -0.226 1.226
27 H -0.223 1.223
28 C 0.020 3.980
29 H 0.077 0.923
30 H 0.113 0.887
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.124 0.876
34 H 0.085 0.915
35 H 0.079 0.921
36 H 0.113 0.887
37 H 0.080 0.920
38 H 0.100 0.900
39 H 0.100 0.900
40 H 0.065 0.935
41 H 0.110 0.890
42 H 0.078 0.922
43 H 0.092 0.908
44 H 0.094 0.906
45 H 0.069 0.931
46 H 0.072 0.928
47 H 0.084 0.916
48 H 0.058 0.942
49 H 0.015 0.985
50 H 0.063 0.937
51 H 0.094 0.906
52 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -0.614 6.850 -16.289 17.682
hybrid contribution -1.285 -0.344 -0.652 1.481
sum -1.899 6.506 -16.941 18.247
Atomic orbital electron populations
1.22475 0.94077 1.03556 1.03557 1.22482 0.94629 0.92844 0.81560
1.21879 1.02436 0.90493 1.04325 1.22461 1.01599 1.02146 0.97301
1.86334 1.71563 1.22677 1.47583 1.17599 0.78614 0.80841 0.81083
1.90865 1.42576 1.71161 1.43818 1.47335 1.52825 1.12983 1.21357
1.22489 0.94758 0.98647 0.85474 1.22737 1.02566 0.93305 0.95763
1.22033 0.99091 0.95977 0.92091 0.89862 1.20613 0.92467 0.93097
0.86026 0.97354 1.22080 1.00137 0.96290 0.97987 1.21373 0.97673
0.99463 0.95840 1.21936 0.99751 0.97359 0.97652 1.20759 0.94187
0.89086 0.92697 1.44340 1.23874 1.46741 1.18217 1.20130 0.93949
1.37000 0.94236 0.91705 1.26874 1.07458 0.98181 0.94538 1.70820
1.00232 1.50524 1.37918 0.82967 0.72266 0.75963 0.75569 1.19350
1.22567 1.22333 1.21886 1.00072 0.79192 0.96842 0.92348 0.88656
0.92187 0.91206 0.87582 0.91494 0.92135 0.88720 0.92001 0.89957
0.90006 0.93479 0.89031 0.92227 0.90797 0.90556 0.93100 0.92829
0.91580 0.94196 0.98512 0.93662 0.90580 0.91767
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16
2 C 0.12 2.58 1.13 -10.80 -0.01 2.57 16
3 C -0.13 -1.94 8.85 71.98 0.64 -1.30 16
4 C -0.18 -3.60 8.37 71.98 0.60 -2.99 16
5 O -0.37 -10.25 9.42 -55.52 -0.52 -10.77 16
6 C 0.66 21.19 7.93 129.79 1.03 22.22 16
7 O -0.59 -20.76 12.21 19.79 0.24 -20.52 16
8 N -0.60 -18.83 3.33 -942.10 -3.13 -21.96 16
9 C 0.11 3.17 6.92 86.86 0.60 3.77 16
10 C -0.11 -3.74 5.48 31.99 0.18 -3.57 16
11 C -0.07 -2.49 1.86 -9.61 -0.02 -2.51 16
12 H 0.08 2.95 7.26 -2.38 -0.02 2.94 16
13 C 0.18 7.03 2.32 45.13 0.10 7.13 16
14 H 0.01 0.37 8.12 -2.39 -0.02 0.35 16
15 C -0.13 -4.01 5.07 30.82 0.16 -3.85 16
16 C -0.11 -3.27 5.88 30.62 0.18 -3.09 16
17 C -0.13 -4.57 6.08 30.67 0.19 -4.39 16
18 C 0.16 7.24 4.70 86.36 0.41 7.64 16
19 N -0.61 -27.91 2.78 -674.42 -1.88 -29.79 16
20 C -0.32 -16.05 6.69 84.03 0.56 -15.48 16
21 H 0.07 3.13 5.51 -2.91 -0.02 3.12 16
22 C -0.07 -3.94 4.72 84.86 0.40 -3.54 16
23 N -0.95 -55.89 12.58 21.65 0.27 -55.62 16
24 Si 1.11 48.78 29.97 68.60 2.06 50.84 16
25 H -0.27 -10.72 7.11 99.48 0.71 -10.02 16
26 H -0.30 -13.42 7.11 99.48 0.71 -12.72 16
27 H -0.30 -13.06 7.11 99.48 0.71 -12.35 16
28 C 0.14 4.36 5.59 86.73 0.48 4.84 16
29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16
30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16
31 H 0.06 1.63 5.88 -2.39 -0.01 1.62 16
32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16
33 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16
34 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16
35 H 0.06 1.59 5.88 -2.39 -0.01 1.58 16
36 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16
37 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16
38 H 0.08 2.27 8.04 -2.39 -0.02 2.25 16
39 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16
40 H 0.05 1.85 8.03 -2.39 -0.02 1.83 16
41 H 0.09 3.63 5.90 -2.39 -0.01 3.62 16
42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
43 H 0.07 2.03 7.34 -2.39 -0.02 2.01 16
44 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16
45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16
46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16
47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16
48 H 0.04 2.08 6.59 -2.38 -0.02 2.06 16
49 H 0.00 -0.15 7.82 -2.39 -0.02 -0.17 16
50 H 0.25 15.28 6.68 -92.71 -0.62 14.66 16
51 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16
52 H 0.06 2.03 7.53 -2.39 -0.02 2.01 16
Total: -1.00 -63.16 386.14 4.16 -59.00
By element:
Atomic # 1 Polarization: 23.52 SS G_CDS: 1.03 Total: 24.55 kcal
Atomic # 6 Polarization: -1.82 SS G_CDS: 6.10 Total: 4.28 kcal
Atomic # 7 Polarization: -102.63 SS G_CDS: -4.74 Total: -107.37 kcal
Atomic # 8 Polarization: -31.01 SS G_CDS: -0.28 Total: -31.29 kcal
Atomic # 14 Polarization: 48.78 SS G_CDS: 2.06 Total: 50.84 kcal
Total: -63.16 4.16 -59.00 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000495666090.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.582 kcal
(2) G-P(sol) polarization free energy of solvation -63.159 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.741 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.93 seconds