Wall clock time and date at job start Tue Mar 31 2020 15:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47680 * 2 1 4 4 C 1.53003 * 109.47010 * 239.99853 * 2 1 3 5 5 O 1.45200 * 109.47144 * 119.99988 * 2 1 3 6 6 C 1.34642 * 116.99910 * 60.00053 * 5 2 1 7 7 O 1.21506 * 120.00023 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99767 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99840 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.01287 * 324.52722 * 9 8 6 11 11 C 1.53875 * 110.03714 * 85.97028 * 9 8 6 12 12 C 1.54266 * 106.59804 * 119.28512 * 11 9 8 13 13 C 1.54889 * 104.19645 * 336.38925 * 12 11 9 14 14 C 1.54268 * 110.03269 * 203.13761 * 9 8 6 15 15 H 1.09007 * 110.48436 * 145.64435 * 14 9 8 16 16 N 1.46902 * 110.48706 * 23.00143 * 14 9 8 17 17 C 1.46895 * 111.00271 * 159.00777 * 16 14 9 18 18 C 1.52991 * 109.47414 * 184.29116 * 17 16 14 19 19 C 1.50700 * 115.55137 * 276.49752 * 18 17 16 20 20 H 1.08000 * 119.99984 * 114.39760 * 19 18 17 21 21 C 1.37875 * 120.00212 * 294.39672 * 19 18 17 22 22 N 1.31522 * 119.99680 * 353.47626 * 21 19 18 23 23 Si 1.86798 * 120.00364 * 173.47454 * 21 19 18 24 24 H 1.48497 * 109.47568 * 90.00300 * 23 21 19 25 25 H 1.48506 * 109.47209 * 210.00511 * 23 21 19 26 26 H 1.48505 * 109.47039 * 329.99734 * 23 21 19 27 27 C 1.52999 * 117.50076 * 130.78821 * 18 17 16 28 28 C 1.52993 * 60.00073 * 252.50897 * 27 18 17 29 29 H 1.09007 * 109.46881 * 300.00135 * 1 2 3 30 30 H 1.08998 * 109.47182 * 59.99903 * 1 2 3 31 31 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47533 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46892 * 300.00275 * 3 2 1 34 34 H 1.09000 * 109.46682 * 59.99441 * 3 2 1 35 35 H 1.08997 * 109.47232 * 300.00208 * 4 2 1 36 36 H 1.08998 * 109.46949 * 60.00101 * 4 2 1 37 37 H 1.08996 * 109.46970 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00555 * 359.72277 * 8 6 5 39 39 H 1.08997 * 110.03055 * 238.57016 * 11 9 8 40 40 H 1.09001 * 110.02734 * 0.02562 * 11 9 8 41 41 H 1.08998 * 110.48183 * 217.71446 * 12 11 9 42 42 H 1.08997 * 110.59792 * 95.13169 * 12 11 9 43 43 H 1.08999 * 110.75731 * 279.62769 * 13 12 11 44 44 H 1.09006 * 110.91217 * 156.32993 * 13 12 11 45 45 H 1.00902 * 110.99638 * 35.05622 * 16 14 9 46 46 H 1.09006 * 109.47732 * 304.29439 * 17 16 14 47 47 H 1.09006 * 109.46970 * 64.29230 * 17 16 14 48 48 H 0.97005 * 119.99558 * 185.00971 * 22 21 19 49 49 H 1.08994 * 117.50289 * 0.02562 * 27 18 17 50 50 H 1.09009 * 117.49894 * 145.02007 * 27 18 17 51 51 H 1.09006 * 117.50253 * 252.50706 * 28 27 18 52 52 H 1.09005 * 117.51868 * 107.48140 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0666 2.5836 10 1 0.6613 -4.2168 2.2069 11 6 2.6568 -4.9834 1.8357 12 6 3.2939 -5.9048 2.8963 13 6 3.1416 -5.1193 4.2226 14 6 1.7467 -4.4629 4.0727 15 1 0.9605 -5.1775 4.3166 16 7 1.6443 -3.2724 4.9273 17 6 1.2176 -3.6343 6.2855 18 6 1.0193 -2.3633 7.1135 19 6 2.2671 -1.7914 7.7355 20 1 2.6356 -0.8271 7.4179 21 6 2.9384 -2.4991 8.7099 22 7 2.4229 -3.6105 9.1882 23 14 4.5800 -1.8795 9.3507 24 1 4.3515 -0.9813 10.5109 25 1 5.4133 -3.0333 9.7746 26 1 5.2805 -1.1315 8.2759 27 6 -0.2874 -2.2277 7.8979 28 6 -0.0537 -1.3770 6.6479 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.6297 -2.2377 3.0815 39 1 2.1227 -5.5794 1.0957 40 1 3.4277 -4.3858 1.3491 41 1 4.3470 -6.0736 2.6718 42 1 2.7596 -6.8532 2.9510 43 1 3.9182 -4.3599 4.3132 44 1 3.1611 -5.7938 5.0787 45 1 1.0216 -2.5893 4.5226 46 1 0.2789 -4.1862 6.2366 47 1 1.9810 -4.2567 6.7524 48 1 2.8579 -4.0696 9.9238 49 1 -1.0056 -3.0443 7.8243 50 1 -0.2446 -1.7250 8.8641 51 1 0.1428 -0.3145 6.7917 52 1 -0.6181 -1.6335 5.7513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496318708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:01 Heat of formation + Delta-G solvation = -63.954084 kcal Electronic energy + Delta-G solvation = -29409.838067 eV Core-core repulsion = 25602.784743 eV Total energy + Delta-G solvation = -3807.053324 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.74553 -38.98701 -37.00892 -36.44797 -34.24560 -33.14352 -33.02692 -31.92796 -27.70379 -27.49624 -27.45608 -27.35599 -25.54480 -23.71486 -22.63697 -21.12352 -20.42619 -20.02352 -19.46436 -18.98929 -18.13651 -16.68766 -16.22030 -16.01267 -15.69182 -15.20790 -14.62199 -14.54445 -14.44366 -14.32103 -14.06132 -13.71910 -13.49555 -13.14367 -12.96508 -12.60416 -12.52098 -12.18503 -11.97195 -11.95258 -11.87251 -11.62667 -11.34198 -11.33336 -11.12135 -10.98927 -10.93680 -10.91740 -10.71375 -10.64364 -10.46738 -10.37161 -10.35061 -10.21154 -9.96035 -9.35212 -8.98368 -8.90061 -8.50280 -8.09385 -7.66491 -5.98421 -4.00767 2.29839 2.97508 3.32131 3.39538 3.44225 4.21969 4.44775 4.59100 4.64255 4.67252 4.70592 4.82178 4.84500 5.16275 5.26208 5.35809 5.43070 5.43896 5.48679 5.54487 5.58243 5.59897 5.65200 5.70600 5.76755 5.77090 5.83320 5.89149 6.00862 6.06698 6.13424 6.15842 6.19700 6.25644 6.34327 6.42617 6.49365 6.52213 6.60497 6.63809 6.69709 6.71058 6.94236 7.08519 7.40482 7.63207 7.67533 7.87388 7.96733 8.08797 8.50869 8.56200 8.96875 9.61746 11.10026 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.003711 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.037318 B = 7543.010754 C = 8397.081417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.182 4.182 5 O -0.362 6.362 6 C 0.649 3.351 7 O -0.579 6.579 8 N -0.692 5.692 9 C 0.159 3.841 10 H 0.087 0.913 11 C -0.130 4.130 12 C -0.125 4.125 13 C -0.111 4.111 14 C 0.074 3.926 15 H 0.056 0.944 16 N -0.670 5.670 17 C 0.109 3.891 18 C 0.059 3.941 19 C -0.476 4.476 20 H 0.058 0.942 21 C 0.070 3.930 22 N -0.884 5.884 23 Si 0.888 3.112 24 H -0.284 1.284 25 H -0.287 1.287 26 H -0.273 1.273 27 C -0.176 4.176 28 C -0.211 4.211 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.420 0.580 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.080 0.920 44 H 0.068 0.932 45 H 0.332 0.668 46 H -0.003 1.003 47 H 0.089 0.911 48 H 0.258 0.742 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.711 1.358 -17.704 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.403 3.597 7 O -0.469 6.469 8 N -0.353 5.353 9 C 0.055 3.945 10 H 0.105 0.895 11 C -0.169 4.169 12 C -0.163 4.163 13 C -0.149 4.149 14 C -0.037 4.037 15 H 0.074 0.926 16 N -0.301 5.301 17 C -0.019 4.019 18 C 0.058 3.942 19 C -0.513 4.513 20 H 0.076 0.924 21 C -0.132 4.132 22 N -0.522 5.522 23 Si 0.717 3.283 24 H -0.210 1.210 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.215 4.215 28 C -0.248 4.248 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.258 0.742 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.151 0.849 46 H 0.015 0.985 47 H 0.107 0.893 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.097 0.903 51 H 0.095 0.905 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.319 0.989 -17.897 17.927 hybrid contribution 0.010 0.280 0.602 0.664 sum -0.309 1.269 -17.295 17.345 Atomic orbital electron populations 1.22514 0.94145 1.05049 1.02352 1.21997 0.94288 0.91501 0.82235 1.21857 1.02242 0.92719 1.03042 1.22508 1.01449 1.03523 0.96472 1.86347 1.71445 1.23817 1.46071 1.18139 0.78776 0.80361 0.82464 1.90855 1.41787 1.70654 1.43637 1.44858 1.54834 1.12155 1.23441 1.21745 0.98746 0.78391 0.95649 0.89526 1.22561 0.98603 0.97756 0.98017 1.22345 1.00517 0.98164 0.95262 1.22532 0.96966 0.99042 0.96371 1.22675 0.97886 0.93314 0.89846 0.92635 1.60541 1.56264 1.10392 1.02946 1.21589 0.96826 0.97426 0.86082 1.18849 0.88781 0.91446 0.95115 1.20385 1.07110 1.03579 1.20273 0.92367 1.24919 0.97219 0.94635 0.96448 1.69970 1.39639 1.17315 1.25268 0.86649 0.84445 0.78239 0.79010 1.20991 1.21336 1.19762 1.22749 1.02861 1.01112 0.94741 1.22826 1.07450 0.97430 0.97144 0.92047 0.91455 0.89372 0.91506 0.90401 0.91298 0.89367 0.91434 0.92305 0.74174 0.91323 0.91224 0.91616 0.91752 0.90164 0.91362 0.84883 0.98478 0.89273 0.93175 0.92169 0.90274 0.90541 0.92195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.37 37.15 0.31 -1.75 16 2 C 0.14 1.57 1.13 -90.62 -0.10 1.46 16 3 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 4 C -0.18 -1.94 8.37 37.16 0.31 -1.63 16 5 O -0.36 -5.11 9.94 -40.33 -0.40 -5.51 16 6 C 0.65 9.66 8.04 54.05 0.43 10.09 16 7 O -0.58 -9.29 11.57 -19.28 -0.22 -9.51 16 8 N -0.69 -9.76 4.07 -57.63 -0.23 -9.99 16 9 C 0.16 2.15 3.03 -66.81 -0.20 1.94 16 10 H 0.09 1.22 7.62 -51.93 -0.40 0.83 16 11 C -0.13 -1.56 6.58 -25.61 -0.17 -1.73 16 12 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 13 C -0.11 -1.58 6.52 -24.74 -0.16 -1.74 16 14 C 0.07 1.10 3.07 -66.05 -0.20 0.90 16 15 H 0.06 0.84 7.82 -51.92 -0.41 0.43 16 16 N -0.67 -11.97 5.29 -104.98 -0.56 -12.53 16 17 C 0.11 2.35 5.44 -3.83 -0.02 2.33 16 18 C 0.06 1.39 1.50 -155.67 -0.23 1.16 16 19 C -0.48 -12.58 8.83 -34.44 -0.30 -12.89 16 20 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 21 C 0.07 1.87 5.25 -17.82 -0.09 1.77 16 22 N -0.88 -24.35 12.54 55.43 0.70 -23.66 16 23 Si 0.89 20.88 29.55 -169.99 -5.02 15.86 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 27 C -0.18 -4.05 9.88 -26.74 -0.26 -4.31 16 28 C -0.21 -4.48 9.39 -26.74 -0.25 -4.73 16 29 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.18 5.88 -51.93 -0.31 0.88 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 1.13 5.88 -51.93 -0.31 0.83 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.42 6.16 7.78 -40.82 -0.32 5.84 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.86 7.92 -51.93 -0.41 0.45 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.33 5.88 6.78 -39.29 -0.27 5.62 16 46 H 0.00 -0.06 7.76 -51.93 -0.40 -0.46 16 47 H 0.09 2.18 7.24 -51.93 -0.38 1.80 16 48 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 49 H 0.06 1.31 8.06 -51.93 -0.42 0.90 16 50 H 0.08 1.91 8.14 -51.92 -0.42 1.49 16 51 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 52 H 0.06 1.16 7.81 -51.93 -0.41 0.75 16 LS Contribution 406.05 15.07 6.12 6.12 Total: -1.00 -27.77 406.05 -9.89 -37.66 By element: Atomic # 1 Polarization: 22.70 SS G_CDS: -9.48 Total: 13.23 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -0.79 Total: -11.67 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.09 Total: -46.18 kcal Atomic # 8 Polarization: -14.39 SS G_CDS: -0.62 Total: -15.01 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -27.77 -9.89 -37.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496318708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.298 kcal (2) G-P(sol) polarization free energy of solvation -27.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds