Wall clock time and date at job start Tue Mar 31 2020 15:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47680 * 2 1 4 4 C 1.53003 * 109.47010 * 239.99853 * 2 1 3 5 5 O 1.45200 * 109.47144 * 119.99988 * 2 1 3 6 6 C 1.34642 * 116.99910 * 60.00053 * 5 2 1 7 7 O 1.21506 * 120.00023 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99767 * 180.02562 * 6 5 2 9 9 C 1.46503 * 119.99840 * 179.97438 * 8 6 5 10 10 H 1.09006 * 110.01287 * 324.52722 * 9 8 6 11 11 C 1.53875 * 110.03714 * 85.97028 * 9 8 6 12 12 C 1.54266 * 106.59804 * 119.28512 * 11 9 8 13 13 C 1.54889 * 104.19645 * 336.38925 * 12 11 9 14 14 C 1.54268 * 110.03269 * 203.13761 * 9 8 6 15 15 H 1.09007 * 110.48436 * 145.64435 * 14 9 8 16 16 N 1.46902 * 110.48706 * 23.00143 * 14 9 8 17 17 C 1.46895 * 111.00271 * 159.00777 * 16 14 9 18 18 C 1.52991 * 109.47414 * 184.29116 * 17 16 14 19 19 C 1.50700 * 115.55137 * 276.49752 * 18 17 16 20 20 H 1.08000 * 119.99984 * 114.39760 * 19 18 17 21 21 C 1.37875 * 120.00212 * 294.39672 * 19 18 17 22 22 N 1.31522 * 119.99680 * 353.47626 * 21 19 18 23 23 Si 1.86798 * 120.00364 * 173.47454 * 21 19 18 24 24 H 1.48497 * 109.47568 * 90.00300 * 23 21 19 25 25 H 1.48506 * 109.47209 * 210.00511 * 23 21 19 26 26 H 1.48505 * 109.47039 * 329.99734 * 23 21 19 27 27 C 1.52999 * 117.50076 * 130.78821 * 18 17 16 28 28 C 1.52993 * 60.00073 * 252.50897 * 27 18 17 29 29 H 1.09007 * 109.46881 * 300.00135 * 1 2 3 30 30 H 1.08998 * 109.47182 * 59.99903 * 1 2 3 31 31 H 1.08997 * 109.47293 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47533 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.46892 * 300.00275 * 3 2 1 34 34 H 1.09000 * 109.46682 * 59.99441 * 3 2 1 35 35 H 1.08997 * 109.47232 * 300.00208 * 4 2 1 36 36 H 1.08998 * 109.46949 * 60.00101 * 4 2 1 37 37 H 1.08996 * 109.46970 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00555 * 359.72277 * 8 6 5 39 39 H 1.08997 * 110.03055 * 238.57016 * 11 9 8 40 40 H 1.09001 * 110.02734 * 0.02562 * 11 9 8 41 41 H 1.08998 * 110.48183 * 217.71446 * 12 11 9 42 42 H 1.08997 * 110.59792 * 95.13169 * 12 11 9 43 43 H 1.08999 * 110.75731 * 279.62769 * 13 12 11 44 44 H 1.09006 * 110.91217 * 156.32993 * 13 12 11 45 45 H 1.00902 * 110.99638 * 35.05622 * 16 14 9 46 46 H 1.09006 * 109.47732 * 304.29439 * 17 16 14 47 47 H 1.09006 * 109.46970 * 64.29230 * 17 16 14 48 48 H 0.97005 * 119.99558 * 185.00971 * 22 21 19 49 49 H 1.08994 * 117.50289 * 0.02562 * 27 18 17 50 50 H 1.09009 * 117.49894 * 145.02007 * 27 18 17 51 51 H 1.09006 * 117.50253 * 252.50706 * 28 27 18 52 52 H 1.09005 * 117.51868 * 107.48140 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0672 -2.6654 2.4171 9 6 1.6731 -4.0666 2.5836 10 1 0.6613 -4.2168 2.2069 11 6 2.6568 -4.9834 1.8357 12 6 3.2939 -5.9048 2.8963 13 6 3.1416 -5.1193 4.2226 14 6 1.7467 -4.4629 4.0727 15 1 0.9605 -5.1775 4.3166 16 7 1.6443 -3.2724 4.9273 17 6 1.2176 -3.6343 6.2855 18 6 1.0193 -2.3633 7.1135 19 6 2.2671 -1.7914 7.7355 20 1 2.6356 -0.8271 7.4179 21 6 2.9384 -2.4991 8.7099 22 7 2.4229 -3.6105 9.1882 23 14 4.5800 -1.8795 9.3507 24 1 4.3515 -0.9813 10.5109 25 1 5.4133 -3.0333 9.7746 26 1 5.2805 -1.1315 8.2759 27 6 -0.2874 -2.2277 7.8979 28 6 -0.0537 -1.3770 6.6479 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.6297 -2.2377 3.0815 39 1 2.1227 -5.5794 1.0957 40 1 3.4277 -4.3858 1.3491 41 1 4.3470 -6.0736 2.6718 42 1 2.7596 -6.8532 2.9510 43 1 3.9182 -4.3599 4.3132 44 1 3.1611 -5.7938 5.0787 45 1 1.0216 -2.5893 4.5226 46 1 0.2789 -4.1862 6.2366 47 1 1.9810 -4.2567 6.7524 48 1 2.8579 -4.0696 9.9238 49 1 -1.0056 -3.0443 7.8243 50 1 -0.2446 -1.7250 8.8641 51 1 0.1428 -0.3145 6.7917 52 1 -0.6181 -1.6335 5.7513 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496318708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:00 Heat of formation + Delta-G solvation = -78.866534 kcal Electronic energy + Delta-G solvation = -29410.484719 eV Core-core repulsion = 25602.784743 eV Total energy + Delta-G solvation = -3807.699976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83254 -40.15493 -38.58750 -37.67580 -35.27790 -34.54980 -34.12907 -33.92526 -28.81206 -28.72596 -28.31023 -28.24979 -27.47990 -25.29476 -23.69828 -22.90438 -21.50847 -21.10389 -20.76370 -20.65405 -19.26427 -18.10324 -17.68911 -17.08931 -16.88438 -16.53757 -16.41119 -15.97267 -15.48325 -15.43865 -15.18063 -15.08034 -14.88373 -14.51568 -14.32098 -13.80809 -13.49281 -13.29471 -13.18460 -12.99743 -12.85284 -12.84155 -12.81221 -12.70365 -12.53222 -12.41910 -12.26407 -12.20695 -12.09631 -12.04992 -11.95432 -11.88253 -11.46320 -11.32094 -11.17431 -11.03216 -10.83090 -10.43297 -10.10309 -9.97188 -9.16236 -8.02846 -6.09902 1.26329 1.43721 1.47118 1.56056 1.83579 2.48403 3.06821 3.23239 3.39128 3.47959 3.67633 3.74392 3.80736 3.85834 4.00204 4.12801 4.33446 4.38434 4.41653 4.51855 4.56652 4.60968 4.63127 4.65915 4.73929 4.75311 4.79589 4.81102 4.85047 4.88779 4.92011 4.95098 5.00314 5.05301 5.07842 5.15461 5.21397 5.26508 5.29798 5.33108 5.36617 5.44596 5.52380 5.59045 5.66452 5.73129 5.96385 6.33161 6.46546 6.51952 6.66541 6.91848 7.43054 7.54822 9.04796 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011757 B = 0.003711 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.037318 B = 7543.010754 C = 8397.081417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.177 4.177 5 O -0.373 6.373 6 C 0.648 3.352 7 O -0.592 6.592 8 N -0.691 5.691 9 C 0.165 3.835 10 H 0.083 0.917 11 C -0.123 4.123 12 C -0.112 4.112 13 C -0.110 4.110 14 C 0.074 3.926 15 H 0.058 0.942 16 N -0.669 5.669 17 C 0.127 3.873 18 C 0.034 3.966 19 C -0.489 4.489 20 H 0.047 0.953 21 C 0.029 3.971 22 N -0.908 5.908 23 Si 0.944 3.056 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.270 1.270 27 C -0.183 4.183 28 C -0.185 4.185 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.091 0.909 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.055 0.945 45 H 0.334 0.666 46 H -0.002 1.002 47 H 0.057 0.943 48 H 0.258 0.742 49 H 0.069 0.931 50 H 0.060 0.940 51 H 0.076 0.924 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.446 1.897 -19.557 19.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.234 4.234 5 O -0.288 6.288 6 C 0.402 3.598 7 O -0.484 6.484 8 N -0.351 5.351 9 C 0.061 3.939 10 H 0.101 0.899 11 C -0.162 4.162 12 C -0.150 4.150 13 C -0.149 4.149 14 C -0.036 4.036 15 H 0.076 0.924 16 N -0.301 5.301 17 C -0.002 4.002 18 C 0.033 3.967 19 C -0.526 4.526 20 H 0.066 0.934 21 C -0.171 4.171 22 N -0.547 5.547 23 Si 0.770 3.230 24 H -0.208 1.208 25 H -0.212 1.212 26 H -0.195 1.195 27 C -0.222 4.222 28 C -0.222 4.222 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.255 0.745 39 H 0.099 0.901 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.097 0.903 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.154 0.846 46 H 0.016 0.984 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.088 0.912 50 H 0.079 0.921 51 H 0.095 0.905 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.055 1.540 -19.763 19.823 hybrid contribution -0.107 0.159 1.153 1.169 sum -0.162 1.699 -18.611 18.689 Atomic orbital electron populations 1.22470 0.94082 1.03713 1.03381 1.22397 0.94553 0.92645 0.81680 1.21891 1.02365 0.91023 1.04159 1.22450 1.01511 1.02298 0.97129 1.86356 1.71608 1.23353 1.47470 1.18211 0.78610 0.80671 0.82354 1.90852 1.42373 1.71049 1.44086 1.44871 1.54638 1.12352 1.23256 1.21700 0.99139 0.78531 0.94515 0.89883 1.22506 0.98136 0.97477 0.98082 1.22287 1.01611 0.98111 0.93028 1.22482 0.95998 0.98729 0.97665 1.22730 0.98361 0.92263 0.90293 0.92447 1.60426 1.56014 1.11736 1.01920 1.21185 0.95699 0.95853 0.87464 1.18952 0.88316 0.93114 0.96287 1.20611 1.08308 1.03266 1.20459 0.93429 1.25510 0.99818 0.94898 0.96830 1.70066 1.40750 1.18206 1.25671 0.85783 0.81103 0.77683 0.78398 1.20759 1.21201 1.19512 1.22689 1.02917 1.01934 0.94647 1.22799 1.05598 0.96862 0.96976 0.92495 0.88952 0.91779 0.91349 0.87737 0.91714 0.91714 0.89010 0.92116 0.74550 0.90084 0.91520 0.90305 0.90295 0.91672 0.92628 0.84633 0.98405 0.92452 0.93337 0.91228 0.92125 0.90545 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.78 8.37 71.98 0.60 -3.18 16 2 C 0.12 2.64 1.13 -10.79 -0.01 2.63 16 3 C -0.14 -2.16 8.85 71.98 0.64 -1.53 16 4 C -0.18 -3.48 8.37 71.98 0.60 -2.88 16 5 O -0.37 -10.26 9.94 -55.51 -0.55 -10.81 16 6 C 0.65 18.93 8.04 129.79 1.04 19.97 16 7 O -0.59 -18.72 11.57 19.82 0.23 -18.49 16 8 N -0.69 -19.11 4.07 -566.65 -2.31 -21.42 16 9 C 0.17 4.30 3.03 45.72 0.14 4.44 16 10 H 0.08 2.26 7.62 -2.38 -0.02 2.24 16 11 C -0.12 -2.73 6.58 31.32 0.21 -2.52 16 12 C -0.11 -2.37 6.83 31.67 0.22 -2.16 16 13 C -0.11 -3.11 6.52 31.88 0.21 -2.90 16 14 C 0.07 2.17 3.07 45.99 0.14 2.31 16 15 H 0.06 1.70 7.82 -2.38 -0.02 1.68 16 16 N -0.67 -23.85 5.29 -486.04 -2.57 -26.42 16 17 C 0.13 5.52 5.44 86.30 0.47 5.99 16 18 C 0.03 1.62 1.50 -52.93 -0.08 1.54 16 19 C -0.49 -26.10 8.83 25.60 0.23 -25.87 16 20 H 0.05 2.58 7.82 -2.91 -0.02 2.56 16 21 C 0.03 1.56 5.25 84.65 0.44 2.01 16 22 N -0.91 -50.78 12.54 21.45 0.27 -50.51 16 23 Si 0.94 43.18 29.55 68.60 2.03 45.21 16 24 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 27 C -0.18 -8.43 9.88 30.59 0.30 -8.12 16 28 C -0.19 -7.68 9.39 30.59 0.29 -7.39 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.68 5.88 -2.39 -0.01 1.67 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.06 1.61 5.88 -2.39 -0.01 1.59 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.42 12.12 7.78 -92.71 -0.72 11.40 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.54 7.92 -2.39 -0.02 1.53 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 45 H 0.33 11.64 6.78 -89.69 -0.61 11.04 16 46 H 0.00 -0.09 7.76 -2.38 -0.02 -0.11 16 47 H 0.06 2.87 7.24 -2.38 -0.02 2.85 16 48 H 0.26 13.88 8.32 -92.70 -0.77 13.11 16 49 H 0.07 3.02 8.06 -2.39 -0.02 3.00 16 50 H 0.06 2.97 8.14 -2.38 -0.02 2.95 16 51 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 52 H 0.08 3.05 7.81 -2.38 -0.02 3.03 16 Total: -1.00 -59.78 406.05 2.10 -57.69 By element: Atomic # 1 Polarization: 42.82 SS G_CDS: -0.43 Total: 42.39 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.43 Total: -17.64 kcal Atomic # 7 Polarization: -93.73 SS G_CDS: -4.61 Total: -98.34 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.32 Total: -29.30 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -59.78 2.10 -57.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496318708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.181 kcal (2) G-P(sol) polarization free energy of solvation -59.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds