Wall clock time and date at job start Tue Mar 31 2020 14:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47338 * 2 1 4 4 C 1.53002 * 109.46776 * 240.00054 * 2 1 3 5 5 O 1.45195 * 109.46903 * 120.00447 * 2 1 3 6 6 C 1.34639 * 117.00509 * 60.00044 * 5 2 1 7 7 O 1.21508 * 119.99372 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00101 * 179.97438 * 6 5 2 9 9 C 1.47674 * 134.44435 * 179.97438 * 8 6 5 10 10 C 1.53446 * 85.95362 * 204.26972 * 9 8 6 11 11 C 1.47688 * 134.44973 * 359.97438 * 8 6 5 12 12 C 1.52710 * 113.67261 * 91.20160 * 10 9 8 13 13 C 1.53225 * 109.09435 * 77.61630 * 12 10 9 14 14 N 1.47035 * 109.32994 * 56.73978 * 13 12 10 15 15 C 1.46898 * 110.96714 * 172.22560 * 14 13 12 16 16 C 1.52997 * 109.47213 * 294.57246 * 15 14 13 17 17 C 1.50707 * 109.46948 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00344 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99566 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99766 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00212 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47174 * 90.00143 * 21 19 17 23 23 H 1.48495 * 109.47324 * 209.99917 * 21 19 17 24 24 H 1.48501 * 109.47430 * 330.00097 * 21 19 17 25 25 C 1.46838 * 111.49524 * 296.51411 * 14 13 12 26 26 C 1.52707 * 113.68140 * 222.12001 * 10 9 8 27 27 H 1.08998 * 109.46871 * 299.99696 * 1 2 3 28 28 H 1.09000 * 109.46893 * 59.99866 * 1 2 3 29 29 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47109 * 300.00641 * 3 2 1 32 32 H 1.09000 * 109.47137 * 59.99840 * 3 2 1 33 33 H 1.08998 * 109.47559 * 300.00075 * 4 2 1 34 34 H 1.09008 * 109.47063 * 60.00343 * 4 2 1 35 35 H 1.08998 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.09006 * 113.79573 * 90.01675 * 9 8 6 37 37 H 1.09000 * 113.80008 * 318.52835 * 9 8 6 38 38 H 1.09001 * 113.79182 * 41.47023 * 11 8 6 39 39 H 1.08993 * 113.79517 * 269.99043 * 11 8 6 40 40 H 1.09002 * 109.54681 * 197.52483 * 12 10 9 41 41 H 1.08999 * 109.54956 * 317.70892 * 12 10 9 42 42 H 1.08992 * 109.47758 * 176.81883 * 13 12 10 43 43 H 1.08999 * 109.47509 * 296.84384 * 13 12 10 44 44 H 1.08999 * 109.47071 * 54.57638 * 15 14 13 45 45 H 1.09007 * 109.47095 * 174.56993 * 15 14 13 46 46 H 1.09000 * 109.47173 * 299.99688 * 16 15 14 47 47 H 1.08997 * 109.47247 * 59.99995 * 16 15 14 48 48 H 0.97004 * 120.00016 * 180.02562 * 20 19 17 49 49 H 1.08991 * 109.47955 * 303.56532 * 25 14 13 50 50 H 1.09002 * 109.47832 * 183.55051 * 25 14 13 51 51 H 1.08999 * 109.54502 * 42.20030 * 26 10 9 52 52 H 1.08994 * 109.54917 * 162.38897 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.8718 -4.0490 2.8951 10 6 2.1576 -3.4895 4.2951 11 6 2.9024 -2.3467 3.5926 12 6 0.9048 -3.0381 5.0425 13 6 0.1779 -4.2699 5.5921 14 7 1.0960 -5.0348 6.4489 15 6 0.3878 -6.1197 7.1412 16 6 -0.6301 -5.5240 8.1157 17 6 -1.3562 -6.6371 8.8265 18 1 -1.1159 -7.6664 8.6049 19 6 -2.3272 -6.3412 9.7595 20 7 -2.9611 -7.3126 10.3794 21 14 -2.7423 -4.5609 10.1433 22 1 -3.8239 -4.0983 9.2369 23 1 -3.1970 -4.4513 11.5526 24 1 -1.5361 -3.7175 9.9453 25 6 2.2373 -5.5546 5.6853 26 6 3.0620 -4.3838 5.1402 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2495 36 1 2.6274 -4.7491 2.5387 37 1 0.8540 -4.4180 2.7684 38 1 2.7030 -1.3639 4.0196 39 1 3.9646 -2.5401 3.4437 40 1 1.1879 -2.3837 5.8670 41 1 0.2465 -2.5007 4.3599 42 1 -0.6866 -3.9519 6.1748 43 1 -0.1525 -4.8966 4.7637 44 1 -0.1295 -6.7406 6.4099 45 1 1.1051 -6.7283 7.6920 46 1 -0.1127 -4.9031 8.8471 47 1 -1.3473 -4.9154 7.5650 48 1 -3.6446 -7.1045 11.0356 49 1 1.8737 -6.1605 4.8554 50 1 2.8615 -6.1669 6.3361 51 1 3.8754 -4.7664 4.5237 52 1 3.4726 -3.8078 5.9694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496630231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:15 Heat of formation + Delta-G solvation = -49.111488 kcal Electronic energy + Delta-G solvation = -28648.913327 eV Core-core repulsion = 24842.503626 eV Total energy + Delta-G solvation = -3806.409701 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33292 -40.21993 -37.64767 -36.60499 -34.32527 -33.50225 -32.11389 -30.92349 -29.83156 -27.73297 -27.66307 -27.34290 -26.69997 -24.27119 -23.33943 -22.33292 -21.39857 -19.96628 -19.56291 -18.39398 -17.92210 -16.93419 -16.86145 -16.55178 -15.62554 -15.33968 -15.05413 -14.82850 -14.53423 -14.43991 -14.32324 -13.94115 -13.77639 -13.30870 -13.00017 -12.90583 -12.80111 -12.66515 -12.50264 -12.42433 -12.27793 -12.19192 -12.12795 -11.85408 -11.71022 -11.59612 -11.40378 -11.15603 -10.97845 -10.67343 -10.61429 -10.55071 -10.50628 -10.07147 -9.87671 -9.85965 -9.64356 -9.19614 -8.98967 -8.52085 -7.84247 -6.03871 -4.01942 1.77718 2.69004 3.32284 3.40003 3.45412 3.49564 3.99558 4.33674 4.41326 4.44922 4.46690 4.53579 4.59537 4.63207 4.86065 4.97081 5.14576 5.15991 5.19343 5.22676 5.26849 5.30486 5.36879 5.37025 5.43360 5.45261 5.50071 5.55680 5.57746 5.61207 5.63263 5.69043 5.82858 5.95219 5.95415 5.98997 6.04836 6.10435 6.13310 6.21211 6.28349 6.35360 6.40060 6.76642 7.15037 7.31525 7.47309 7.60212 7.64151 7.85382 8.15671 8.53513 9.00425 9.58694 11.09504 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.002481 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.001716 B =11280.945615 C =12013.698785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.363 6.363 6 C 0.672 3.328 7 O -0.570 6.570 8 N -0.630 5.630 9 C 0.139 3.861 10 C -0.089 4.089 11 C 0.115 3.885 12 C -0.089 4.089 13 C 0.054 3.946 14 N -0.542 5.542 15 C 0.072 3.928 16 C -0.007 4.007 17 C -0.521 4.521 18 H 0.070 0.930 19 C 0.067 3.933 20 N -0.904 5.904 21 Si 0.880 3.120 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.262 1.262 25 C 0.056 3.944 26 C -0.098 4.098 27 H 0.060 0.940 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.029 0.971 44 H 0.025 0.975 45 H 0.067 0.933 46 H 0.025 0.975 47 H 0.011 0.989 48 H 0.263 0.737 49 H 0.029 0.971 50 H 0.075 0.925 51 H 0.068 0.932 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.666 15.479 -20.537 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.277 6.277 6 C 0.428 3.572 7 O -0.460 6.460 8 N -0.372 5.372 9 C 0.018 3.982 10 C -0.090 4.090 11 C -0.007 4.007 12 C -0.127 4.127 13 C -0.074 4.074 14 N -0.267 5.267 15 C -0.055 4.055 16 C -0.045 4.045 17 C -0.560 4.560 18 H 0.088 0.912 19 C -0.134 4.134 20 N -0.543 5.543 21 Si 0.707 3.293 22 H -0.204 1.204 23 H -0.215 1.215 24 H -0.187 1.187 25 C -0.073 4.073 26 C -0.136 4.136 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.104 0.896 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.029 0.971 48 H 0.073 0.927 49 H 0.047 0.953 50 H 0.094 0.906 51 H 0.087 0.913 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 14.413 15.781 -20.554 29.652 hybrid contribution -0.686 0.308 -0.507 0.907 sum 13.727 16.089 -21.061 29.847 Atomic orbital electron populations 1.22521 0.93950 1.05149 1.02483 1.22065 0.94452 0.91488 0.82152 1.21852 1.02155 0.92552 1.03142 1.22510 1.01422 1.03530 0.96518 1.86309 1.71381 1.23721 1.46335 1.17548 0.78900 0.80345 0.80378 1.90897 1.41865 1.70757 1.42482 1.48732 1.53340 1.14074 1.21079 1.23335 1.02887 0.82232 0.89760 1.22163 0.97384 0.95732 0.93691 1.23333 0.95431 1.00020 0.81935 1.21347 0.94261 0.98065 0.99025 1.22150 0.95787 0.94227 0.95219 1.61973 1.09524 1.26291 1.28884 1.22103 0.96290 0.91152 0.95944 1.19581 0.93553 0.96959 0.94410 1.21088 1.19407 0.93814 1.21653 0.91160 1.25003 0.95699 0.97157 0.95562 1.69915 1.25392 1.31819 1.27179 0.86772 0.79153 0.85924 0.77456 1.20415 1.21460 1.18683 1.22049 0.93421 0.95452 0.96334 1.21501 0.96565 0.96497 0.99065 0.92105 0.91182 0.89365 0.91547 0.90152 0.91429 0.89438 0.91156 0.92291 0.89445 0.89646 0.89625 0.89460 0.90266 0.91644 0.89612 0.95259 0.95645 0.91423 0.95703 0.97118 0.92750 0.95329 0.90623 0.91325 0.90139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.78 8.37 37.16 0.31 -1.47 16 2 C 0.14 1.30 1.13 -90.62 -0.10 1.19 16 3 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 4 C -0.18 -1.67 8.37 37.16 0.31 -1.36 16 5 O -0.36 -4.31 9.87 -40.32 -0.40 -4.71 16 6 C 0.67 8.92 8.22 54.05 0.44 9.37 16 7 O -0.57 -8.80 12.61 -19.28 -0.24 -9.04 16 8 N -0.63 -7.17 3.46 -186.43 -0.65 -7.81 16 9 C 0.14 1.43 7.73 -3.17 -0.02 1.41 16 10 C -0.09 -0.86 0.79 -154.46 -0.12 -0.98 16 11 C 0.12 1.01 8.02 -3.18 -0.03 0.98 16 12 C -0.09 -1.05 5.22 -26.76 -0.14 -1.19 16 13 C 0.05 0.80 5.28 -3.63 -0.02 0.78 16 14 N -0.54 -8.58 4.61 -234.28 -1.08 -9.66 16 15 C 0.07 1.40 4.90 -3.83 -0.02 1.38 16 16 C -0.01 -0.17 3.97 -27.88 -0.11 -0.28 16 17 C -0.52 -14.76 9.66 -34.44 -0.33 -15.09 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 20 N -0.90 -27.90 13.96 55.43 0.77 -27.12 16 21 Si 0.88 21.75 27.47 -169.99 -4.67 17.08 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.06 0.69 5.42 -3.74 -0.02 0.66 16 26 C -0.10 -0.91 5.29 -26.76 -0.14 -1.05 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 1.02 5.88 -51.93 -0.31 0.72 16 34 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.77 8.02 -51.93 -0.42 0.35 16 37 H 0.09 0.99 7.66 -51.93 -0.40 0.60 16 38 H 0.09 0.72 8.09 -51.93 -0.42 0.30 16 39 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.79 8.01 -51.93 -0.42 0.37 16 42 H 0.09 1.43 6.14 -51.93 -0.32 1.11 16 43 H 0.03 0.43 7.69 -51.93 -0.40 0.03 16 44 H 0.03 0.51 8.13 -51.93 -0.42 0.08 16 45 H 0.07 1.32 7.96 -51.93 -0.41 0.90 16 46 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 47 H 0.01 0.25 5.81 -51.93 -0.30 -0.05 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 16 50 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 51 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 52 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 397.68 15.07 5.99 5.99 Total: -1.00 -32.66 397.68 -9.58 -42.24 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -9.55 Total: -2.56 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: 0.24 Total: -4.42 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.95 Total: -44.59 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: -0.64 Total: -13.75 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.67 Total: 17.08 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.66 -9.58 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496630231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.869 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds