Wall clock time and date at job start Tue Mar 31 2020 14:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47338 * 2 1 4 4 C 1.53002 * 109.46776 * 240.00054 * 2 1 3 5 5 O 1.45195 * 109.46903 * 120.00447 * 2 1 3 6 6 C 1.34639 * 117.00509 * 60.00044 * 5 2 1 7 7 O 1.21508 * 119.99372 * 359.97438 * 6 5 2 8 8 N 1.34769 * 120.00101 * 179.97438 * 6 5 2 9 9 C 1.47674 * 134.44435 * 179.97438 * 8 6 5 10 10 C 1.53446 * 85.95362 * 204.26972 * 9 8 6 11 11 C 1.47688 * 134.44973 * 359.97438 * 8 6 5 12 12 C 1.52710 * 113.67261 * 91.20160 * 10 9 8 13 13 C 1.53225 * 109.09435 * 77.61630 * 12 10 9 14 14 N 1.47035 * 109.32994 * 56.73978 * 13 12 10 15 15 C 1.46898 * 110.96714 * 172.22560 * 14 13 12 16 16 C 1.52997 * 109.47213 * 294.57246 * 15 14 13 17 17 C 1.50707 * 109.46948 * 180.02562 * 16 15 14 18 18 H 1.07990 * 120.00344 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99566 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99766 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 120.00212 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47174 * 90.00143 * 21 19 17 23 23 H 1.48495 * 109.47324 * 209.99917 * 21 19 17 24 24 H 1.48501 * 109.47430 * 330.00097 * 21 19 17 25 25 C 1.46838 * 111.49524 * 296.51411 * 14 13 12 26 26 C 1.52707 * 113.68140 * 222.12001 * 10 9 8 27 27 H 1.08998 * 109.46871 * 299.99696 * 1 2 3 28 28 H 1.09000 * 109.46893 * 59.99866 * 1 2 3 29 29 H 1.08998 * 109.47138 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47533 * 180.02562 * 3 2 1 31 31 H 1.09005 * 109.47109 * 300.00641 * 3 2 1 32 32 H 1.09000 * 109.47137 * 59.99840 * 3 2 1 33 33 H 1.08998 * 109.47559 * 300.00075 * 4 2 1 34 34 H 1.09008 * 109.47063 * 60.00343 * 4 2 1 35 35 H 1.08998 * 109.46716 * 179.97438 * 4 2 1 36 36 H 1.09006 * 113.79573 * 90.01675 * 9 8 6 37 37 H 1.09000 * 113.80008 * 318.52835 * 9 8 6 38 38 H 1.09001 * 113.79182 * 41.47023 * 11 8 6 39 39 H 1.08993 * 113.79517 * 269.99043 * 11 8 6 40 40 H 1.09002 * 109.54681 * 197.52483 * 12 10 9 41 41 H 1.08999 * 109.54956 * 317.70892 * 12 10 9 42 42 H 1.08992 * 109.47758 * 176.81883 * 13 12 10 43 43 H 1.08999 * 109.47509 * 296.84384 * 13 12 10 44 44 H 1.08999 * 109.47071 * 54.57638 * 15 14 13 45 45 H 1.09007 * 109.47095 * 174.56993 * 15 14 13 46 46 H 1.09000 * 109.47173 * 299.99688 * 16 15 14 47 47 H 1.08997 * 109.47247 * 59.99995 * 16 15 14 48 48 H 0.97004 * 120.00016 * 180.02562 * 20 19 17 49 49 H 1.08991 * 109.47955 * 303.56532 * 25 14 13 50 50 H 1.09002 * 109.47832 * 183.55051 * 25 14 13 51 51 H 1.08999 * 109.54502 * 42.20030 * 26 10 9 52 52 H 1.08994 * 109.54917 * 162.38897 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0140 -0.6846 1.1855 6 6 1.6522 -1.9724 1.3382 7 8 0.9509 -2.5094 0.5039 8 7 2.0680 -2.6658 2.4165 9 6 1.8718 -4.0490 2.8951 10 6 2.1576 -3.4895 4.2951 11 6 2.9024 -2.3467 3.5926 12 6 0.9048 -3.0381 5.0425 13 6 0.1779 -4.2699 5.5921 14 7 1.0960 -5.0348 6.4489 15 6 0.3878 -6.1197 7.1412 16 6 -0.6301 -5.5240 8.1157 17 6 -1.3562 -6.6371 8.8265 18 1 -1.1159 -7.6664 8.6049 19 6 -2.3272 -6.3412 9.7595 20 7 -2.9611 -7.3126 10.3794 21 14 -2.7423 -4.5609 10.1433 22 1 -3.8239 -4.0983 9.2369 23 1 -3.1970 -4.4513 11.5526 24 1 -1.5361 -3.7175 9.9453 25 6 2.2373 -5.5546 5.6853 26 6 3.0620 -4.3838 5.1402 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2495 36 1 2.6274 -4.7491 2.5387 37 1 0.8540 -4.4180 2.7684 38 1 2.7030 -1.3639 4.0196 39 1 3.9646 -2.5401 3.4437 40 1 1.1879 -2.3837 5.8670 41 1 0.2465 -2.5007 4.3599 42 1 -0.6866 -3.9519 6.1748 43 1 -0.1525 -4.8966 4.7637 44 1 -0.1295 -6.7406 6.4099 45 1 1.1051 -6.7283 7.6920 46 1 -0.1127 -4.9031 8.8471 47 1 -1.3473 -4.9154 7.5650 48 1 -3.6446 -7.1045 11.0356 49 1 1.8737 -6.1605 4.8554 50 1 2.8615 -6.1669 6.3361 51 1 3.8754 -4.7664 4.5237 52 1 3.4726 -3.8078 5.9694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496630231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:14 Heat of formation + Delta-G solvation = -69.987503 kcal Electronic energy + Delta-G solvation = -28649.818578 eV Core-core repulsion = 24842.503626 eV Total energy + Delta-G solvation = -3807.314952 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.20052 -41.09682 -38.76566 -37.59458 -35.43001 -35.01738 -33.66181 -31.93241 -31.39779 -28.52614 -28.39311 -28.31288 -27.47122 -25.91948 -24.40926 -23.41214 -22.41143 -21.60313 -20.41140 -19.31507 -18.97865 -18.75423 -17.73640 -17.45509 -16.64241 -16.40099 -16.14853 -16.04464 -16.01789 -15.40543 -15.27963 -15.17693 -14.76846 -14.64919 -14.35460 -14.02872 -13.90972 -13.64103 -13.36179 -13.26566 -13.15766 -13.07687 -13.01057 -12.90017 -12.87934 -12.68524 -12.51345 -12.33649 -12.11993 -11.93433 -11.87562 -11.76194 -11.50746 -11.41257 -11.37901 -11.28339 -11.16250 -10.92041 -10.73665 -9.83503 -9.14198 -8.29439 -6.33209 0.96882 1.36126 1.38266 1.51400 1.74390 2.36804 2.73765 3.01905 3.06336 3.27602 3.68710 3.72889 3.78080 3.79233 3.92930 3.99229 4.22542 4.25949 4.31178 4.42755 4.44545 4.53959 4.56588 4.56936 4.58695 4.61628 4.66735 4.73761 4.73905 4.80376 4.81323 4.85870 4.86330 4.93372 4.95332 5.04844 5.10920 5.13360 5.16108 5.25051 5.27449 5.31129 5.33922 5.40918 5.48707 5.52452 5.65232 6.16119 6.31118 6.37446 6.60673 6.74969 7.23028 7.31484 8.87253 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019413 B = 0.002481 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.001716 B =11280.945615 C =12013.698785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 C -0.134 4.134 4 C -0.177 4.177 5 O -0.366 6.366 6 C 0.663 3.337 7 O -0.602 6.602 8 N -0.636 5.636 9 C 0.135 3.865 10 C -0.082 4.082 11 C 0.125 3.875 12 C -0.080 4.080 13 C 0.054 3.946 14 N -0.544 5.544 15 C 0.083 3.917 16 C 0.000 4.000 17 C -0.532 4.532 18 H 0.032 0.968 19 C 0.005 3.995 20 N -0.951 5.951 21 Si 0.950 3.050 22 H -0.269 1.269 23 H -0.283 1.283 24 H -0.245 1.245 25 C 0.050 3.950 26 C -0.086 4.086 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.091 0.909 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.024 0.976 44 H 0.013 0.987 45 H 0.065 0.935 46 H 0.023 0.977 47 H 0.014 0.986 48 H 0.266 0.734 49 H 0.030 0.970 50 H 0.080 0.920 51 H 0.101 0.899 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.959 18.406 -21.531 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.191 4.191 4 C -0.235 4.235 5 O -0.281 6.281 6 C 0.420 3.580 7 O -0.494 6.494 8 N -0.378 5.378 9 C 0.014 3.986 10 C -0.083 4.083 11 C 0.003 3.997 12 C -0.118 4.118 13 C -0.074 4.074 14 N -0.269 5.269 15 C -0.044 4.044 16 C -0.038 4.038 17 C -0.570 4.570 18 H 0.050 0.950 19 C -0.192 4.192 20 N -0.592 5.592 21 Si 0.774 3.226 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.168 1.168 25 C -0.077 4.077 26 C -0.124 4.124 27 H 0.078 0.922 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.082 0.918 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.110 0.890 39 H 0.134 0.866 40 H 0.102 0.898 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.031 0.969 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.033 0.967 48 H 0.075 0.925 49 H 0.048 0.952 50 H 0.098 0.902 51 H 0.119 0.881 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.743 18.718 -21.551 33.093 hybrid contribution -1.415 -0.706 -0.236 1.599 sum 15.327 18.012 -21.787 32.156 Atomic orbital electron populations 1.22477 0.94398 1.03378 1.03502 1.22424 0.94344 0.92892 0.81642 1.21870 1.02506 0.90419 1.04284 1.22452 1.01668 1.01992 0.97354 1.86313 1.71369 1.23028 1.47380 1.17800 0.78826 0.80776 0.80592 1.90883 1.43245 1.71446 1.43791 1.48935 1.53358 1.14443 1.21028 1.23465 1.02526 0.82424 0.90186 1.22024 0.96671 0.96485 0.93120 1.23484 0.96404 0.99724 0.80042 1.21230 0.94989 0.96443 0.99144 1.22135 0.95485 0.95304 0.94516 1.61933 1.09937 1.24900 1.30082 1.21782 0.95539 0.91838 0.95273 1.19450 0.94175 0.95343 0.94819 1.21443 1.19898 0.93602 1.22074 0.94979 1.25985 0.95579 1.02213 0.95409 1.70066 1.26400 1.34489 1.28228 0.85651 0.79617 0.79927 0.77427 1.19468 1.20920 1.16828 1.22218 0.92309 0.97072 0.96135 1.21474 0.96465 0.95015 0.99479 0.92231 0.88998 0.92431 0.90973 0.87928 0.91370 0.92373 0.89042 0.91754 0.87304 0.91692 0.89042 0.86567 0.89819 0.92182 0.91937 0.95770 0.96889 0.91665 0.95844 0.96735 0.92503 0.95184 0.90188 0.88058 0.89458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 2 C 0.12 2.19 1.13 -10.79 -0.01 2.18 16 3 C -0.13 -1.46 8.85 71.98 0.64 -0.82 16 4 C -0.18 -3.05 8.37 71.98 0.60 -2.44 16 5 O -0.37 -8.27 9.87 -55.48 -0.55 -8.81 16 6 C 0.66 17.25 8.22 129.79 1.07 18.32 16 7 O -0.60 -18.98 12.61 19.82 0.25 -18.73 16 8 N -0.64 -13.38 3.46 -974.17 -3.37 -16.75 16 9 C 0.13 2.55 7.73 86.30 0.67 3.22 16 10 C -0.08 -1.37 0.79 -52.05 -0.04 -1.41 16 11 C 0.12 1.75 8.02 86.29 0.69 2.44 16 12 C -0.08 -1.77 5.22 30.57 0.16 -1.62 16 13 C 0.05 1.56 5.28 86.35 0.46 2.02 16 14 N -0.54 -16.63 4.61 -895.14 -4.13 -20.77 16 15 C 0.08 3.27 4.90 86.30 0.42 3.70 16 16 C 0.00 -0.01 3.97 29.85 0.12 0.11 16 17 C -0.53 -31.02 9.66 25.60 0.25 -30.77 16 18 H 0.03 2.05 7.99 -2.92 -0.02 2.02 16 19 C 0.00 0.29 5.47 84.66 0.46 0.75 16 20 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 21 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 22 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 25 C 0.05 1.13 5.42 86.39 0.47 1.59 16 26 C -0.09 -1.28 5.29 30.57 0.16 -1.12 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.37 5.88 -2.39 -0.01 1.36 16 34 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.11 1.61 8.02 -2.38 -0.02 1.59 16 37 H 0.06 1.50 7.66 -2.39 -0.02 1.48 16 38 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 39 H 0.12 1.04 8.09 -2.39 -0.02 1.02 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.06 1.40 8.01 -2.39 -0.02 1.38 16 42 H 0.06 2.09 6.14 -2.39 -0.01 2.08 16 43 H 0.02 0.72 7.69 -2.39 -0.02 0.70 16 44 H 0.01 0.53 8.13 -2.39 -0.02 0.51 16 45 H 0.06 2.56 7.96 -2.38 -0.02 2.54 16 46 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 47 H 0.01 0.68 5.81 -2.39 -0.01 0.66 16 48 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 49 H 0.03 0.68 8.09 -2.39 -0.02 0.66 16 50 H 0.08 1.75 7.98 -2.39 -0.02 1.73 16 51 H 0.10 0.94 8.04 -2.39 -0.02 0.92 16 52 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -74.06 397.68 1.91 -72.15 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: 0.81 Total: 12.69 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: 6.71 Total: -6.63 kcal Atomic # 7 Polarization: -90.31 SS G_CDS: -7.20 Total: -97.52 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.30 Total: -27.54 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -74.06 1.91 -72.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496630231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.164 kcal (2) G-P(sol) polarization free energy of solvation -74.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds