Wall clock time and date at job start Tue Mar 31 2020 14:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47550 * 2 1 4 4 C 1.53003 * 109.47102 * 239.99763 * 2 1 3 5 5 O 1.45209 * 109.47178 * 120.00371 * 2 1 3 6 6 C 1.34632 * 117.00045 * 59.99183 * 5 2 1 7 7 O 1.21510 * 120.00119 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00296 * 180.02562 * 6 5 2 9 9 C 1.47428 * 125.64278 * 359.69296 * 8 6 5 10 10 C 1.54908 * 104.82872 * 156.14025 * 9 8 6 11 11 C 1.55147 * 101.58484 * 37.00665 * 10 9 8 12 12 H 1.09003 * 110.87016 * 82.93507 * 11 10 9 13 13 C 1.53000 * 110.72188 * 206.13449 * 11 10 9 14 14 H 1.09002 * 109.49915 * 54.97812 * 13 11 10 15 15 C 1.53044 * 109.49685 * 294.91190 * 13 11 10 16 16 C 1.53049 * 109.53532 * 178.67994 * 15 13 11 17 17 C 1.53195 * 109.30983 * 61.36934 * 16 15 13 18 18 N 1.46920 * 108.77375 * 305.35940 * 17 16 15 19 19 C 1.36931 * 120.63236 * 233.61337 * 18 17 16 20 20 H 1.08000 * 120.00247 * 151.84781 * 19 18 17 21 21 C 1.38817 * 120.00070 * 331.84638 * 19 18 17 22 22 N 1.31621 * 119.99804 * 343.06632 * 21 19 18 23 23 Si 1.86799 * 120.00217 * 163.06636 * 21 19 18 24 24 H 1.48498 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47242 * 120.00163 * 23 21 19 26 26 H 1.48501 * 109.47260 * 239.99979 * 23 21 19 27 27 C 1.46941 * 118.76451 * 53.59310 * 18 17 16 28 28 C 1.47015 * 125.65262 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.46698 * 300.00356 * 1 2 3 30 30 H 1.08999 * 109.46861 * 59.99684 * 1 2 3 31 31 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47165 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47296 * 300.00049 * 3 2 1 34 34 H 1.08996 * 109.47484 * 60.00213 * 3 2 1 35 35 H 1.09002 * 109.47230 * 300.00765 * 4 2 1 36 36 H 1.09002 * 109.46961 * 59.99765 * 4 2 1 37 37 H 1.09003 * 109.47475 * 180.02562 * 4 2 1 38 38 H 1.08999 * 110.36667 * 274.97512 * 9 8 6 39 39 H 1.08996 * 110.36983 * 37.29510 * 9 8 6 40 40 H 1.08997 * 111.00345 * 278.92874 * 10 9 8 41 41 H 1.09010 * 111.03760 * 155.10157 * 10 9 8 42 42 H 1.08992 * 109.46267 * 298.70347 * 15 13 11 43 43 H 1.09004 * 109.45929 * 58.67615 * 15 13 11 44 44 H 1.09005 * 109.49315 * 181.31950 * 16 15 13 45 45 H 1.08996 * 109.49612 * 301.38304 * 16 15 13 46 46 H 1.08997 * 109.58593 * 65.15360 * 17 16 15 47 47 H 1.08996 * 109.58098 * 185.43593 * 17 16 15 48 48 H 0.96993 * 119.99910 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.61298 * 186.64117 * 27 18 17 50 50 H 1.09000 * 109.56195 * 66.21112 * 27 18 17 51 51 H 1.09000 * 109.88346 * 300.21308 * 28 8 6 52 52 H 1.09004 * 109.88646 * 61.37592 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0670 -2.6656 2.4171 9 6 2.9216 -2.1418 3.4983 10 6 2.6079 -3.0391 4.7215 11 6 2.4194 -4.4254 4.0508 12 1 3.3813 -4.9105 3.8850 13 6 1.5050 -5.3153 4.8951 14 1 0.5611 -4.8006 5.0746 15 6 2.1827 -5.6208 6.2328 16 6 1.2550 -6.4838 7.0912 17 6 0.9863 -7.8092 6.3716 18 7 0.4692 -7.5208 5.0270 19 6 -0.7078 -8.0740 4.5986 20 1 -1.3107 -7.5598 3.8648 21 6 -1.1262 -9.2959 5.1075 22 7 -0.2696 -10.0775 5.7301 23 14 -2.9049 -9.8308 4.9088 24 1 -3.6586 -8.7813 4.1769 25 1 -2.9570 -11.1020 4.1428 26 1 -3.5132 -10.0347 6.2481 27 6 1.2385 -6.6271 4.1502 28 6 1.7482 -4.0711 2.7072 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6765 -1.7490 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2491 38 1 3.9734 -2.2268 3.2253 39 1 2.6675 -1.1041 3.7138 40 1 1.6923 -2.7172 5.2175 41 1 3.4441 -3.0537 5.4207 42 1 3.1147 -6.1568 6.0537 43 1 2.3951 -4.6872 6.7538 44 1 1.7286 -6.6814 8.0529 45 1 0.3135 -5.9583 7.2505 46 1 1.9136 -8.3766 6.2926 47 1 0.2511 -8.3867 6.9319 48 1 -0.5620 -10.9311 6.0860 49 1 0.6679 -6.4233 3.2441 50 1 2.1861 -7.0984 3.8896 51 1 0.6685 -4.1973 2.7877 52 1 2.1403 -4.7110 1.9166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496951273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:08 Heat of formation + Delta-G solvation = -71.337549 kcal Electronic energy + Delta-G solvation = -29028.101972 eV Core-core repulsion = 25220.728477 eV Total energy + Delta-G solvation = -3807.373495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.87395 -39.23503 -37.37471 -36.34276 -34.28297 -33.45384 -31.70114 -30.58046 -29.75927 -27.80775 -27.63058 -27.56167 -25.27866 -24.21043 -22.35628 -21.97634 -21.36828 -19.91300 -19.42526 -19.13188 -17.93323 -16.80817 -16.58225 -16.44360 -15.48417 -15.14295 -14.76181 -14.54247 -14.14841 -13.97104 -13.78009 -13.43755 -13.27232 -13.18696 -12.94017 -12.74555 -12.68889 -12.41208 -12.33151 -12.19943 -12.09655 -12.04150 -11.85187 -11.55460 -11.42386 -11.29351 -11.04437 -10.93327 -10.86573 -10.57777 -10.50368 -10.32239 -10.14460 -10.12485 -10.07004 -9.85221 -9.46966 -9.32276 -8.74043 -8.43392 -6.62680 -5.75659 -3.18016 2.03197 2.82821 3.39393 3.47469 3.50171 3.79990 4.49922 4.50977 4.53866 4.54752 4.60229 4.69419 4.83800 5.19368 5.22682 5.29742 5.31343 5.37463 5.39263 5.46025 5.46673 5.53572 5.56768 5.59701 5.65731 5.69162 5.74702 5.76328 5.83110 5.89211 5.98572 6.02590 6.10684 6.12328 6.17861 6.23180 6.37001 6.38695 6.39982 6.45639 6.65576 6.72307 6.85557 6.90703 7.02801 7.43037 7.46377 7.70548 7.83767 8.31577 8.48682 9.25175 9.88594 10.45113 11.32709 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.002832 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.263494 B = 9884.444258 C =11072.297966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.364 6.364 6 C 0.665 3.335 7 O -0.566 6.566 8 N -0.603 5.603 9 C 0.104 3.896 10 C -0.127 4.127 11 C -0.090 4.090 12 H 0.085 0.915 13 C -0.093 4.093 14 H 0.070 0.930 15 C -0.100 4.100 16 C -0.143 4.143 17 C 0.170 3.830 18 N -0.592 5.592 19 C -0.250 4.250 20 H 0.065 0.935 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.151 3.849 28 C 0.130 3.870 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.053 0.947 43 H 0.045 0.955 44 H 0.047 0.953 45 H 0.053 0.947 46 H 0.016 0.984 47 H 0.085 0.915 48 H 0.252 0.748 49 H 0.053 0.947 50 H 0.017 0.983 51 H 0.077 0.923 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.504 21.624 -5.805 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.420 3.580 7 O -0.456 6.456 8 N -0.344 5.344 9 C -0.019 4.019 10 C -0.165 4.165 11 C -0.110 4.110 12 H 0.104 0.896 13 C -0.113 4.113 14 H 0.088 0.912 15 C -0.138 4.138 16 C -0.182 4.182 17 C 0.044 3.956 18 N -0.314 5.314 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.730 3.270 24 H -0.202 1.202 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.024 3.976 28 C 0.009 3.991 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.098 0.902 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.034 0.966 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.035 0.965 51 H 0.095 0.905 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.198 21.388 -6.141 23.714 hybrid contribution -0.867 -0.340 -0.118 0.938 sum 7.332 21.049 -6.259 23.151 Atomic orbital electron populations 1.22522 0.93999 1.05253 1.02347 1.22046 0.94409 0.91424 0.82250 1.21845 1.02144 0.92629 1.03031 1.22519 1.01446 1.03677 0.96422 1.86290 1.71632 1.23700 1.46290 1.17490 0.78907 0.80295 0.81317 1.90913 1.41343 1.70441 1.42871 1.47244 1.52818 1.13111 1.21248 1.22349 0.94399 0.98573 0.86567 1.22868 1.02870 0.94501 0.96249 1.22317 0.99951 0.95395 0.93300 0.89636 1.21702 0.97267 0.97177 0.95188 0.91196 1.21409 0.98493 0.98550 0.95336 1.22186 0.98473 0.99901 0.97666 1.20770 0.98009 0.91280 0.85540 1.44036 1.23446 1.53357 1.10543 1.19232 0.95860 0.99741 1.23145 0.91688 1.25034 0.98031 0.95286 1.01341 1.70046 1.32418 1.10291 1.42014 0.86252 0.85124 0.78231 0.77375 1.20229 1.21756 1.21606 1.20954 0.94860 0.88903 0.92889 1.22096 1.01325 0.78426 0.97247 0.92220 0.91223 0.89238 0.91555 0.90210 0.91532 0.89272 0.91221 0.92269 0.91384 0.90523 0.90337 0.89658 0.92797 0.93625 0.93427 0.92867 0.96561 0.89685 0.93756 0.92862 0.96487 0.90480 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.92 8.37 37.15 0.31 -1.61 16 2 C 0.14 1.40 1.13 -90.63 -0.10 1.30 16 3 C -0.14 -1.01 8.85 37.15 0.33 -0.68 16 4 C -0.18 -1.87 8.37 37.16 0.31 -1.55 16 5 O -0.36 -4.62 9.42 -40.30 -0.38 -4.99 16 6 C 0.66 9.77 7.93 54.05 0.43 10.20 16 7 O -0.57 -9.64 12.21 -19.28 -0.24 -9.88 16 8 N -0.60 -8.06 3.33 -176.31 -0.59 -8.65 16 9 C 0.10 1.06 6.92 -2.53 -0.02 1.05 16 10 C -0.13 -1.29 5.61 -24.59 -0.14 -1.43 16 11 C -0.09 -1.14 2.49 -88.79 -0.22 -1.36 16 12 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 13 C -0.09 -1.48 1.71 -90.50 -0.15 -1.64 16 14 H 0.07 1.21 8.13 -51.93 -0.42 0.78 16 15 C -0.10 -1.56 5.02 -26.68 -0.13 -1.70 16 16 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 17 C 0.17 4.02 5.30 -3.71 -0.02 4.00 16 18 N -0.59 -14.71 2.99 -172.32 -0.52 -15.23 16 19 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 20 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 21 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 22 N -0.90 -26.35 11.19 55.49 0.62 -25.73 16 23 Si 0.90 21.94 29.59 -169.99 -5.03 16.91 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 C 0.15 3.05 5.48 -3.70 -0.02 3.03 16 28 C 0.13 1.81 5.59 -3.07 -0.02 1.80 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.19 5.88 -51.93 -0.31 0.88 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.09 1.15 5.88 -51.93 -0.31 0.85 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.73 8.04 -51.93 -0.42 0.31 16 40 H 0.08 0.84 8.04 -51.93 -0.42 0.43 16 41 H 0.08 0.73 8.10 -51.92 -0.42 0.31 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.60 7.37 -51.93 -0.38 0.22 16 44 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 2.27 6.06 -51.93 -0.31 1.96 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.05 1.09 7.15 -51.93 -0.37 0.72 16 50 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 51 H 0.08 1.21 7.55 -51.93 -0.39 0.82 16 52 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 393.94 15.07 5.94 5.94 Total: -1.00 -31.28 393.94 -9.67 -40.95 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -9.64 Total: -0.81 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 0.16 Total: 1.50 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: -0.48 Total: -49.61 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.61 Total: -14.87 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.28 -9.67 -40.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496951273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.391 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds