Wall clock time and date at job start Tue Mar 31 2020 14:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47550 * 2 1 4 4 C 1.53003 * 109.47102 * 239.99763 * 2 1 3 5 5 O 1.45209 * 109.47178 * 120.00371 * 2 1 3 6 6 C 1.34632 * 117.00045 * 59.99183 * 5 2 1 7 7 O 1.21510 * 120.00119 * 0.02562 * 6 5 2 8 8 N 1.34776 * 120.00296 * 180.02562 * 6 5 2 9 9 C 1.47428 * 125.64278 * 359.69296 * 8 6 5 10 10 C 1.54908 * 104.82872 * 156.14025 * 9 8 6 11 11 C 1.55147 * 101.58484 * 37.00665 * 10 9 8 12 12 H 1.09003 * 110.87016 * 82.93507 * 11 10 9 13 13 C 1.53000 * 110.72188 * 206.13449 * 11 10 9 14 14 H 1.09002 * 109.49915 * 54.97812 * 13 11 10 15 15 C 1.53044 * 109.49685 * 294.91190 * 13 11 10 16 16 C 1.53049 * 109.53532 * 178.67994 * 15 13 11 17 17 C 1.53195 * 109.30983 * 61.36934 * 16 15 13 18 18 N 1.46920 * 108.77375 * 305.35940 * 17 16 15 19 19 C 1.36931 * 120.63236 * 233.61337 * 18 17 16 20 20 H 1.08000 * 120.00247 * 151.84781 * 19 18 17 21 21 C 1.38817 * 120.00070 * 331.84638 * 19 18 17 22 22 N 1.31621 * 119.99804 * 343.06632 * 21 19 18 23 23 Si 1.86799 * 120.00217 * 163.06636 * 21 19 18 24 24 H 1.48498 * 109.47083 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47242 * 120.00163 * 23 21 19 26 26 H 1.48501 * 109.47260 * 239.99979 * 23 21 19 27 27 C 1.46941 * 118.76451 * 53.59310 * 18 17 16 28 28 C 1.47015 * 125.65262 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.46698 * 300.00356 * 1 2 3 30 30 H 1.08999 * 109.46861 * 59.99684 * 1 2 3 31 31 H 1.08998 * 109.47676 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47165 * 180.02562 * 3 2 1 33 33 H 1.08999 * 109.47296 * 300.00049 * 3 2 1 34 34 H 1.08996 * 109.47484 * 60.00213 * 3 2 1 35 35 H 1.09002 * 109.47230 * 300.00765 * 4 2 1 36 36 H 1.09002 * 109.46961 * 59.99765 * 4 2 1 37 37 H 1.09003 * 109.47475 * 180.02562 * 4 2 1 38 38 H 1.08999 * 110.36667 * 274.97512 * 9 8 6 39 39 H 1.08996 * 110.36983 * 37.29510 * 9 8 6 40 40 H 1.08997 * 111.00345 * 278.92874 * 10 9 8 41 41 H 1.09010 * 111.03760 * 155.10157 * 10 9 8 42 42 H 1.08992 * 109.46267 * 298.70347 * 15 13 11 43 43 H 1.09004 * 109.45929 * 58.67615 * 15 13 11 44 44 H 1.09005 * 109.49315 * 181.31950 * 16 15 13 45 45 H 1.08996 * 109.49612 * 301.38304 * 16 15 13 46 46 H 1.08997 * 109.58593 * 65.15360 * 17 16 15 47 47 H 1.08996 * 109.58098 * 185.43593 * 17 16 15 48 48 H 0.96993 * 119.99910 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.61298 * 186.64117 * 27 18 17 50 50 H 1.09000 * 109.56195 * 66.21112 * 27 18 17 51 51 H 1.09000 * 109.88346 * 300.21308 * 28 8 6 52 52 H 1.09004 * 109.88646 * 61.37592 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6846 1.1856 6 6 1.6521 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0670 -2.6656 2.4171 9 6 2.9216 -2.1418 3.4983 10 6 2.6079 -3.0391 4.7215 11 6 2.4194 -4.4254 4.0508 12 1 3.3813 -4.9105 3.8850 13 6 1.5050 -5.3153 4.8951 14 1 0.5611 -4.8006 5.0746 15 6 2.1827 -5.6208 6.2328 16 6 1.2550 -6.4838 7.0912 17 6 0.9863 -7.8092 6.3716 18 7 0.4692 -7.5208 5.0270 19 6 -0.7078 -8.0740 4.5986 20 1 -1.3107 -7.5598 3.8648 21 6 -1.1262 -9.2959 5.1075 22 7 -0.2696 -10.0775 5.7301 23 14 -2.9049 -9.8308 4.9088 24 1 -3.6586 -8.7813 4.1769 25 1 -2.9570 -11.1020 4.1428 26 1 -3.5132 -10.0347 6.2481 27 6 1.2385 -6.6271 4.1502 28 6 1.7482 -4.0711 2.7072 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1301 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.6765 -1.7490 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7218 -1.2491 38 1 3.9734 -2.2268 3.2253 39 1 2.6675 -1.1041 3.7138 40 1 1.6923 -2.7172 5.2175 41 1 3.4441 -3.0537 5.4207 42 1 3.1147 -6.1568 6.0537 43 1 2.3951 -4.6872 6.7538 44 1 1.7286 -6.6814 8.0529 45 1 0.3135 -5.9583 7.2505 46 1 1.9136 -8.3766 6.2926 47 1 0.2511 -8.3867 6.9319 48 1 -0.5620 -10.9311 6.0860 49 1 0.6679 -6.4233 3.2441 50 1 2.1861 -7.0984 3.8896 51 1 0.6685 -4.1973 2.7877 52 1 2.1403 -4.7110 1.9166 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496951273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:06 Heat of formation + Delta-G solvation = -88.744468 kcal Electronic energy + Delta-G solvation = -29028.856793 eV Core-core repulsion = 25220.728477 eV Total energy + Delta-G solvation = -3808.128315 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.89621 -40.36794 -38.73127 -37.52638 -35.44929 -34.88316 -33.16304 -32.31706 -30.96567 -29.08906 -28.37519 -28.28141 -27.20376 -25.39324 -23.87649 -23.31639 -22.44977 -21.19096 -20.62062 -20.38687 -18.99885 -18.54087 -17.75459 -17.46772 -16.86207 -16.45561 -16.08933 -15.72404 -15.46490 -15.25115 -14.98713 -14.78964 -14.58803 -14.39414 -14.30051 -14.06923 -13.73975 -13.46443 -13.33343 -13.18359 -13.04908 -12.98614 -12.88185 -12.86260 -12.80996 -12.51430 -12.45832 -12.29424 -12.19632 -12.04032 -11.94676 -11.86328 -11.58964 -11.42194 -11.39017 -11.14580 -11.02732 -10.91590 -10.53483 -9.79244 -8.65350 -7.87861 -5.33063 1.05184 1.43011 1.44868 1.55610 1.72526 2.49569 2.90875 3.25726 3.51852 3.60114 3.67044 3.75873 3.79668 3.94574 3.94863 4.22364 4.29728 4.33300 4.38278 4.42547 4.50004 4.59917 4.60731 4.63631 4.73442 4.74625 4.75678 4.80268 4.83393 4.88334 4.89996 4.94893 4.99256 5.06010 5.11049 5.12767 5.19094 5.23691 5.27710 5.30033 5.35368 5.39911 5.43170 5.45549 5.55174 5.58849 5.69723 5.83176 6.39420 6.42480 7.15668 7.24261 7.88268 8.38292 9.17701 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017056 B = 0.002832 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.263494 B = 9884.444258 C =11072.297966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.123 3.877 3 C -0.132 4.132 4 C -0.180 4.180 5 O -0.362 6.362 6 C 0.658 3.342 7 O -0.599 6.599 8 N -0.606 5.606 9 C 0.103 3.897 10 C -0.116 4.116 11 C -0.079 4.079 12 H 0.100 0.900 13 C -0.078 4.078 14 H 0.057 0.943 15 C -0.093 4.093 16 C -0.133 4.133 17 C 0.173 3.827 18 N -0.612 5.612 19 C -0.261 4.261 20 H 0.059 0.941 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.270 1.270 25 H -0.291 1.291 26 H -0.287 1.287 27 C 0.148 3.852 28 C 0.131 3.869 29 H 0.061 0.939 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.046 0.954 46 H -0.004 1.004 47 H 0.047 0.953 48 H 0.250 0.750 49 H 0.040 0.960 50 H 0.014 0.986 51 H 0.050 0.950 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 24.790 -5.310 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.087 3.913 3 C -0.189 4.189 4 C -0.237 4.237 5 O -0.276 6.276 6 C 0.414 3.586 7 O -0.491 6.491 8 N -0.347 5.347 9 C -0.019 4.019 10 C -0.153 4.153 11 C -0.098 4.098 12 H 0.118 0.882 13 C -0.098 4.098 14 H 0.076 0.924 15 C -0.130 4.130 16 C -0.172 4.172 17 C 0.048 3.952 18 N -0.335 5.335 19 C -0.392 4.392 20 H 0.077 0.923 21 C -0.245 4.245 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.195 1.195 25 H -0.218 1.218 26 H -0.214 1.214 27 C 0.022 3.978 28 C 0.010 3.990 29 H 0.081 0.919 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.135 0.865 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.014 0.986 47 H 0.066 0.934 48 H 0.059 0.941 49 H 0.059 0.941 50 H 0.032 0.968 51 H 0.069 0.931 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 9.656 24.602 -5.638 27.024 hybrid contribution -1.314 -1.318 -0.359 1.896 sum 8.341 23.284 -5.998 25.450 Atomic orbital electron populations 1.22481 0.94373 1.03332 1.03637 1.22449 0.94387 0.92967 0.81508 1.21863 1.02533 0.90128 1.04401 1.22473 1.01707 1.01988 0.97531 1.86302 1.71482 1.22466 1.47395 1.17721 0.78673 0.80915 0.81311 1.90903 1.42767 1.71259 1.44174 1.47350 1.52931 1.12749 1.21661 1.22576 0.94757 0.99139 0.85380 1.22876 1.04084 0.91906 0.96462 1.22178 0.99198 0.96481 0.91957 0.88203 1.21462 0.97800 0.94880 0.95695 0.92444 1.21386 0.97515 0.99783 0.94363 1.22031 0.99331 0.97238 0.98638 1.20626 0.95659 0.93625 0.85293 1.44315 1.23421 1.53958 1.11790 1.19486 0.97086 0.99809 1.22769 0.92324 1.25750 1.01622 0.95479 1.01696 1.70186 1.34012 1.10527 1.43238 0.85274 0.80758 0.77632 0.77215 1.19500 1.21836 1.21350 1.21102 0.93744 0.90321 0.92612 1.21959 0.99865 0.79179 0.98011 0.91947 0.88910 0.92665 0.90933 0.87910 0.91089 0.92594 0.88949 0.91731 0.89547 0.89278 0.90562 0.86488 0.92215 0.89493 0.91167 0.93518 0.98637 0.93429 0.94107 0.94130 0.96789 0.93108 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.66 8.37 71.98 0.60 -3.06 16 2 C 0.12 2.38 1.13 -10.80 -0.01 2.37 16 3 C -0.13 -1.53 8.85 71.98 0.64 -0.89 16 4 C -0.18 -3.51 8.37 71.98 0.60 -2.90 16 5 O -0.36 -8.77 9.42 -55.42 -0.52 -9.29 16 6 C 0.66 19.37 7.93 129.79 1.03 20.40 16 7 O -0.60 -21.34 12.21 19.81 0.24 -21.10 16 8 N -0.61 -15.68 3.33 -942.13 -3.13 -18.81 16 9 C 0.10 1.78 6.92 86.85 0.60 2.38 16 10 C -0.12 -1.89 5.61 31.98 0.18 -1.71 16 11 C -0.08 -1.81 2.49 -9.61 -0.02 -1.84 16 12 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 13 C -0.08 -2.39 1.71 -10.72 -0.02 -2.41 16 14 H 0.06 1.93 8.13 -2.39 -0.02 1.91 16 15 C -0.09 -2.62 5.02 30.63 0.15 -2.47 16 16 C -0.13 -4.78 6.08 30.68 0.19 -4.60 16 17 C 0.17 8.41 5.30 86.36 0.46 8.87 16 18 N -0.61 -31.34 2.99 -699.09 -2.09 -33.43 16 19 C -0.26 -14.90 9.58 84.04 0.81 -14.10 16 20 H 0.06 3.34 7.88 -2.91 -0.02 3.32 16 21 C -0.05 -2.88 4.92 84.86 0.42 -2.47 16 22 N -0.93 -56.40 11.19 21.65 0.24 -56.15 16 23 Si 0.96 46.35 29.59 68.60 2.03 48.38 16 24 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 26 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 27 C 0.15 6.11 5.48 86.36 0.47 6.58 16 28 C 0.13 3.68 5.59 86.73 0.48 4.17 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.05 1.52 5.88 -2.39 -0.01 1.51 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 1.49 5.88 -2.39 -0.01 1.48 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.37 8.04 -2.39 -0.02 1.35 16 40 H 0.08 1.34 8.04 -2.39 -0.02 1.32 16 41 H 0.12 1.28 8.10 -2.38 -0.02 1.26 16 42 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 1.83 7.37 -2.39 -0.02 1.81 16 44 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.05 2.64 6.06 -2.39 -0.01 2.63 16 48 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 49 H 0.04 1.74 7.15 -2.39 -0.02 1.72 16 50 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 51 H 0.05 1.67 7.55 -2.39 -0.02 1.66 16 52 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -72.44 393.94 4.21 -68.23 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.86 Total: 13.83 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 6.58 Total: 8.33 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.98 Total: -108.39 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -0.28 Total: -30.39 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -72.44 4.21 -68.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496951273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.510 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds