Wall clock time and date at job start Tue Mar 31 2020 14:47:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.52996 * 109.47274 * 2 1
4 4 C 1.53003 * 109.47036 * 240.00090 * 2 1 3
5 5 O 1.45200 * 109.47164 * 120.00533 * 2 1 3
6 6 C 1.34633 * 117.00386 * 59.99163 * 5 2 1
7 7 O 1.21516 * 119.99982 * 0.02562 * 6 5 2
8 8 N 1.34772 * 120.00161 * 180.27311 * 6 5 2
9 9 C 1.46926 * 120.63409 * 359.45602 * 8 6 5
10 10 C 1.52763 * 109.00622 * 233.58260 * 9 8 6
11 11 C 1.53036 * 109.38171 * 305.58189 * 10 9 8
12 12 C 1.53035 * 109.54003 * 61.24093 * 11 10 9
13 13 H 1.09000 * 109.52361 * 58.60234 * 12 11 10
14 14 N 1.46902 * 109.50047 * 178.68200 * 12 11 10
15 15 C 1.46897 * 111.00242 * 204.84114 * 14 12 11
16 16 C 1.52999 * 109.47347 * 174.69570 * 15 14 12
17 17 C 1.50704 * 115.54671 * 39.57136 * 16 15 14
18 18 H 1.07992 * 120.00195 * 265.26351 * 17 16 15
19 19 C 1.37881 * 120.00062 * 85.26908 * 17 16 15
20 20 N 1.31517 * 119.99585 * 353.33849 * 19 17 16
21 21 Si 1.86796 * 120.00173 * 173.33930 * 19 17 16
22 22 H 1.48500 * 109.47155 * 359.97438 * 21 19 17
23 23 H 1.48493 * 109.47172 * 119.99867 * 21 19 17
24 24 H 1.48500 * 109.46782 * 239.99777 * 21 19 17
25 25 C 1.52993 * 117.50068 * 253.86773 * 16 15 14
26 26 C 1.52999 * 117.50092 * 185.23878 * 16 15 14
27 27 C 1.46930 * 120.62871 * 179.72709 * 8 6 5
28 28 H 1.09006 * 109.46983 * 300.00021 * 1 2 3
29 29 H 1.08999 * 109.47096 * 59.99237 * 1 2 3
30 30 H 1.08997 * 109.47711 * 179.97438 * 1 2 3
31 31 H 1.09008 * 109.46933 * 180.02562 * 3 2 1
32 32 H 1.09000 * 109.47642 * 299.99849 * 3 2 1
33 33 H 1.08998 * 109.47261 * 60.00319 * 3 2 1
34 34 H 1.09006 * 109.46847 * 300.00355 * 4 2 1
35 35 H 1.08998 * 109.46951 * 59.99678 * 4 2 1
36 36 H 1.08994 * 109.47298 * 180.02562 * 4 2 1
37 37 H 1.09008 * 109.57890 * 353.40903 * 9 8 6
38 38 H 1.08996 * 109.59233 * 113.83779 * 9 8 6
39 39 H 1.09000 * 109.56074 * 185.54934 * 10 9 8
40 40 H 1.08996 * 109.38870 * 65.50897 * 10 9 8
41 41 H 1.09010 * 109.46145 * 301.22080 * 11 10 9
42 42 H 1.08997 * 109.46306 * 181.26749 * 11 10 9
43 43 H 1.00903 * 110.99494 * 80.88407 * 14 12 11
44 44 H 1.09007 * 109.47096 * 294.69522 * 15 14 12
45 45 H 1.09000 * 109.47233 * 54.69274 * 15 14 12
46 46 H 0.97006 * 119.99939 * 185.05370 * 20 19 17
47 47 H 1.09001 * 117.50201 * 359.97438 * 25 16 15
48 48 H 1.09004 * 117.50508 * 145.02080 * 25 16 15
49 49 H 1.09000 * 117.50303 * 214.97758 * 26 16 15
50 50 H 1.08998 * 117.50031 * 359.97438 * 26 16 15
51 51 H 1.09006 * 109.58501 * 246.15865 * 27 8 6
52 52 H 1.08997 * 109.59007 * 6.44111 * 27 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7212 -1.2493
5 8 2.0140 -0.6846 1.1855
6 6 1.6521 -1.9723 1.3383
7 8 0.9514 -2.5097 0.5036
8 7 2.0630 -2.6640 2.4196
9 6 2.9159 -2.0301 3.4342
10 6 4.1600 -2.8907 3.6465
11 6 3.7360 -4.3214 3.9862
12 6 2.9340 -4.9076 2.8222
13 1 3.5417 -4.8934 1.9174
14 7 2.5544 -6.2916 3.1360
15 6 2.3283 -7.0667 1.9089
16 6 2.0656 -8.5299 2.2709
17 6 1.2128 -8.7540 3.4930
18 1 1.6782 -8.9161 4.4539
19 6 -0.1617 -8.7521 3.3844
20 7 -0.7307 -8.4259 2.2444
21 14 -1.2156 -9.2128 4.8562
22 1 -0.3394 -9.5370 6.0104
23 1 -2.0983 -8.0721 5.2094
24 1 -2.0470 -10.3960 4.5186
25 6 3.1830 -9.5377 1.9942
26 6 1.9272 -9.5285 1.1201
27 6 1.6714 -4.0682 2.6032
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5139 -0.8899
30 1 -0.3634 -1.0276 -0.0005
31 1 3.1301 1.4424 -0.0005
32 1 1.6768 1.9564 -0.8900
33 1 1.6767 1.9563 0.8900
34 1 1.6765 -1.7489 -1.2493
35 1 1.6766 -0.2074 -2.1392
36 1 3.1299 -0.7217 -1.2491
37 1 3.2132 -1.0382 3.0935
38 1 2.3677 -1.9474 4.3726
39 1 4.7510 -2.4820 4.4662
40 1 4.7569 -2.8950 2.7345
41 1 3.1190 -4.3136 4.8848
42 1 4.6225 -4.9313 4.1601
43 1 1.7424 -6.3169 3.7345
44 1 1.4660 -6.6633 1.3780
45 1 3.2100 -7.0028 1.2711
46 1 -1.6963 -8.3531 2.1876
47 1 4.1052 -9.1585 1.5538
48 1 3.3016 -10.3631 2.6961
49 1 1.2197 -10.3479 1.2470
50 1 2.0228 -9.1431 0.1050
51 1 1.0195 -4.1551 3.4725
52 1 1.1455 -4.4200 1.7156
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000497073670.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:47:21
Heat of formation + Delta-G solvation = -61.905656 kcal
Electronic energy + Delta-G solvation = -29327.302855 eV
Core-core repulsion = 25520.338358 eV
Total energy + Delta-G solvation = -3806.964497 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-40.85246 -38.81239 -36.94392 -36.37774 -34.57072 -33.70596 -32.14780 -31.89106
-29.20916 -27.56959 -27.48436 -25.58556 -25.51498 -24.37577 -22.16108 -21.95629
-20.96770 -20.22812 -19.25068 -18.87661 -17.81694 -16.68307 -16.18854 -15.92930
-15.28792 -15.10165 -14.59990 -14.52651 -14.36925 -14.15866 -14.07754 -13.63911
-13.36172 -13.25987 -13.17107 -12.72449 -12.63634 -12.41765 -12.29655 -12.02281
-11.99581 -11.58487 -11.51430 -11.40686 -11.36340 -11.16236 -10.97420 -10.82842
-10.80064 -10.71848 -10.42926 -10.41979 -10.33659 -10.09665 -9.92137 -9.35387
-8.76886 -8.75301 -8.41219 -8.03559 -7.38279 -5.99338 -4.04492 2.16823
2.92498 3.28580 3.38506 3.42285 3.81283 4.42064 4.58111 4.61761
4.69562 4.76819 4.98316 5.02253 5.13070 5.18057 5.28677 5.29932
5.35610 5.37925 5.45522 5.52892 5.53256 5.59121 5.64621 5.73407
5.75909 5.81310 5.88233 5.91470 6.03422 6.10801 6.19587 6.20537
6.23133 6.40190 6.44750 6.46070 6.49009 6.56279 6.62987 6.80503
6.86458 7.00414 7.18919 7.45304 7.46631 7.56093 7.91762 8.05492
8.35568 8.43017 8.56196 8.99111 9.59892 11.08330
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.014474 B = 0.003243 C = 0.003129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1933.991910 B = 8632.647521 C = 8945.595184
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.184 4.184
2 C 0.135 3.865
3 C -0.139 4.139
4 C -0.184 4.184
5 O -0.365 6.365
6 C 0.649 3.351
7 O -0.566 6.566
8 N -0.589 5.589
9 C 0.112 3.888
10 C -0.134 4.134
11 C -0.107 4.107
12 C 0.075 3.925
13 H 0.071 0.929
14 N -0.660 5.660
15 C 0.105 3.895
16 C 0.052 3.948
17 C -0.484 4.484
18 H 0.062 0.938
19 C 0.068 3.932
20 N -0.879 5.879
21 Si 0.885 3.115
22 H -0.272 1.272
23 H -0.286 1.286
24 H -0.285 1.285
25 C -0.208 4.208
26 C -0.163 4.163
27 C 0.098 3.902
28 H 0.058 0.942
29 H 0.068 0.932
30 H 0.089 0.911
31 H 0.065 0.935
32 H 0.078 0.922
33 H 0.065 0.935
34 H 0.089 0.911
35 H 0.068 0.932
36 H 0.058 0.942
37 H 0.087 0.913
38 H 0.068 0.932
39 H 0.076 0.924
40 H 0.064 0.936
41 H 0.064 0.936
42 H 0.073 0.927
43 H 0.355 0.645
44 H 0.031 0.969
45 H 0.037 0.963
46 H 0.258 0.742
47 H 0.062 0.938
48 H 0.074 0.926
49 H 0.079 0.921
50 H 0.059 0.941
51 H 0.071 0.929
52 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.079 19.108 -1.412 20.426
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.241 4.241
2 C 0.098 3.902
3 C -0.196 4.196
4 C -0.241 4.241
5 O -0.280 6.280
6 C 0.404 3.596
7 O -0.455 6.455
8 N -0.330 5.330
9 C -0.011 4.011
10 C -0.173 4.173
11 C -0.146 4.146
12 C -0.037 4.037
13 H 0.090 0.910
14 N -0.292 5.292
15 C -0.024 4.024
16 C 0.051 3.949
17 C -0.523 4.523
18 H 0.080 0.920
19 C -0.135 4.135
20 N -0.516 5.516
21 Si 0.713 3.287
22 H -0.197 1.197
23 H -0.212 1.212
24 H -0.212 1.212
25 C -0.245 4.245
26 C -0.202 4.202
27 C -0.025 4.025
28 H 0.077 0.923
29 H 0.087 0.913
30 H 0.108 0.892
31 H 0.084 0.916
32 H 0.097 0.903
33 H 0.084 0.916
34 H 0.108 0.892
35 H 0.087 0.913
36 H 0.077 0.923
37 H 0.105 0.895
38 H 0.086 0.914
39 H 0.094 0.906
40 H 0.083 0.917
41 H 0.083 0.917
42 H 0.092 0.908
43 H 0.176 0.824
44 H 0.049 0.951
45 H 0.055 0.945
46 H 0.068 0.932
47 H 0.081 0.919
48 H 0.092 0.908
49 H 0.097 0.903
50 H 0.078 0.922
51 H 0.089 0.911
52 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 7.300 18.728 -1.751 20.177
hybrid contribution -1.641 0.116 0.303 1.673
sum 5.660 18.844 -1.448 19.729
Atomic orbital electron populations
1.22516 0.94090 1.05258 1.02222 1.22022 0.94341 0.91396 0.82394
1.21843 1.02122 0.92698 1.02945 1.22516 1.01439 1.03751 0.96376
1.86266 1.71697 1.23903 1.46174 1.18025 0.79013 0.80428 0.82159
1.90916 1.41299 1.70214 1.43070 1.47040 1.52402 1.12509 1.21053
1.21636 0.91291 0.96666 0.91478 1.21863 0.96946 0.96325 1.02118
1.21520 1.00710 0.94110 0.98229 1.21938 0.94533 0.89221 0.98021
0.91036 1.60623 1.44008 1.06775 1.17809 1.21439 0.96778 0.94778
0.89377 1.18765 0.94512 0.86461 0.95111 1.20440 0.89782 1.49021
0.93024 0.91966 1.25012 0.97961 0.95075 0.95405 1.70012 1.10099
1.47169 1.24318 0.86650 0.80551 0.78256 0.83258 1.19652 1.21205
1.21158 1.22990 0.92152 1.04841 1.04500 1.22523 0.98707 1.04509
0.94413 1.22712 0.98797 0.77404 1.03576 0.92310 0.91299 0.89223
0.91568 0.90292 0.91590 0.89213 0.91304 0.92276 0.89475 0.91377
0.90588 0.91696 0.91742 0.90796 0.82396 0.95064 0.94462 0.93176
0.91949 0.90782 0.90282 0.92222 0.91100 0.88503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.08 8.37 37.16 0.31 -1.76 16
2 C 0.14 1.51 1.13 -90.62 -0.10 1.41 16
3 C -0.14 -1.09 8.85 37.16 0.33 -0.76 16
4 C -0.18 -2.08 8.37 37.16 0.31 -1.77 16
5 O -0.37 -4.86 8.53 -40.31 -0.34 -5.20 16
6 C 0.65 10.22 7.74 54.05 0.42 10.64 16
7 O -0.57 -10.46 11.29 -19.29 -0.22 -10.68 16
8 N -0.59 -8.53 2.98 -178.82 -0.53 -9.06 16
9 C 0.11 1.24 6.42 -3.93 -0.03 1.21 16
10 C -0.13 -1.40 6.06 -26.83 -0.16 -1.56 16
11 C -0.11 -1.39 5.49 -26.69 -0.15 -1.54 16
12 C 0.07 1.20 2.62 -67.59 -0.18 1.02 16
13 H 0.07 1.21 7.72 -51.93 -0.40 0.81 16
14 N -0.66 -12.85 6.01 -106.60 -0.64 -13.49 16
15 C 0.11 2.33 5.63 -3.83 -0.02 2.31 16
16 C 0.05 1.27 1.76 -155.66 -0.27 0.99 16
17 C -0.48 -12.68 7.47 -34.44 -0.26 -12.94 16
18 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16
19 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16
20 N -0.88 -24.41 12.93 55.43 0.72 -23.70 16
21 Si 0.88 20.69 29.55 -169.99 -5.02 15.67 16
22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16
23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
25 C -0.21 -4.63 9.88 -26.73 -0.26 -4.89 16
26 C -0.16 -3.90 9.46 -26.73 -0.25 -4.16 16
27 C 0.10 1.60 5.70 -3.71 -0.02 1.58 16
28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
30 H 0.09 1.29 5.88 -51.93 -0.31 0.99 16
31 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16
32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16
33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16
34 H 0.09 1.30 5.88 -51.93 -0.31 0.99 16
35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
36 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
37 H 0.09 0.88 6.93 -51.92 -0.36 0.52 16
38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16
39 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16
40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16
42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
43 H 0.35 7.41 7.40 -39.29 -0.29 7.12 16
44 H 0.03 0.76 7.72 -51.93 -0.40 0.36 16
45 H 0.04 0.78 7.73 -51.93 -0.40 0.38 16
46 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16
47 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16
48 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16
49 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16
50 H 0.06 1.36 8.14 -51.93 -0.42 0.93 16
51 H 0.07 1.15 8.05 -51.93 -0.42 0.73 16
52 H 0.10 1.88 6.60 -51.93 -0.34 1.54 16
LS Contribution 403.19 15.07 6.08 6.08
Total: -1.00 -28.84 403.19 -9.93 -38.76
By element:
Atomic # 1 Polarization: 19.67 SS G_CDS: -9.53 Total: 10.14 kcal
Atomic # 6 Polarization: -8.08 SS G_CDS: -0.43 Total: -8.51 kcal
Atomic # 7 Polarization: -45.80 SS G_CDS: -0.46 Total: -46.25 kcal
Atomic # 8 Polarization: -15.32 SS G_CDS: -0.56 Total: -15.88 kcal
Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal
Total LS contribution 6.08 Total: 6.08 kcal
Total: -28.84 -9.93 -38.76 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000497073670.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.143 kcal
(2) G-P(sol) polarization free energy of solvation -28.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.978 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.763 kcal
(6) G-S(sol) free energy of system = (1) + (5) -61.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds