Wall clock time and date at job start Tue Mar 31 2020 13:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53000 * 109.47034 * 120.00104 * 2 1 3 5 5 H 1.09000 * 109.46774 * 301.66887 * 4 2 1 6 6 N 1.46502 * 109.46889 * 181.67635 * 4 2 1 7 7 C 1.34774 * 120.00178 * 85.27359 * 6 4 2 8 8 O 1.21284 * 119.99858 * 359.72367 * 7 6 4 9 9 C 1.50701 * 119.99742 * 179.72279 * 7 6 4 10 10 C 1.53008 * 109.46741 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46873 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46873 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46741 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00180 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99734 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46851 * 90.00572 * 17 15 13 19 19 H 1.48505 * 109.47397 * 210.00178 * 17 15 13 20 20 H 1.48500 * 109.47446 * 330.00700 * 17 15 13 21 21 C 1.50700 * 109.47385 * 61.67374 * 4 2 1 22 22 O 1.21279 * 119.99987 * 80.48448 * 21 4 2 23 23 N 1.34771 * 119.99767 * 260.48493 * 21 4 2 24 24 C 1.47023 * 125.65026 * 4.37694 * 23 21 4 25 25 C 1.54322 * 107.27673 * 180.96485 * 24 23 21 26 26 C 1.55157 * 102.85897 * 22.52697 * 25 24 23 27 27 C 1.47429 * 125.64418 * 184.67959 * 23 21 4 28 28 H 1.08994 * 109.47026 * 295.01905 * 1 2 3 29 29 H 1.08999 * 109.47378 * 55.02219 * 1 2 3 30 30 H 1.09007 * 109.46915 * 175.02273 * 1 2 3 31 31 H 1.09008 * 109.47175 * 239.99732 * 2 1 3 32 32 H 1.08996 * 109.47287 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46625 * 300.00351 * 3 2 1 34 34 H 1.09004 * 109.46916 * 59.99421 * 3 2 1 35 35 H 0.97006 * 120.00053 * 264.99333 * 6 4 2 36 36 H 1.09001 * 109.47203 * 299.99735 * 9 7 6 37 37 H 1.09001 * 109.47244 * 60.00279 * 9 7 6 38 38 H 1.09001 * 109.46959 * 299.99766 * 10 9 7 39 39 H 1.08992 * 109.47329 * 60.00016 * 10 9 7 40 40 H 1.09001 * 109.46904 * 299.99515 * 11 10 9 41 41 H 1.09001 * 109.47411 * 59.99977 * 11 10 9 42 42 H 1.09001 * 109.46959 * 299.99481 * 12 11 10 43 43 H 1.09001 * 109.47121 * 59.99799 * 12 11 10 44 44 H 0.97003 * 120.00124 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.88097 * 300.50841 * 24 23 21 46 46 H 1.09002 * 109.88022 * 61.67856 * 24 23 21 47 47 H 1.08996 * 110.92048 * 264.11268 * 25 24 23 48 48 H 1.08992 * 110.58830 * 140.78513 * 25 24 23 49 49 H 1.09006 * 111.00145 * 206.22904 * 26 25 24 50 50 H 1.09000 * 111.00862 * 82.37737 * 26 25 24 51 51 H 1.09001 * 110.36852 * 274.67324 * 27 23 21 52 52 H 1.08998 * 110.36568 * 36.89377 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6524 -0.2250 2.1389 6 7 3.5044 -0.6864 1.2696 7 6 4.1460 0.3798 1.7873 8 8 3.5109 1.3126 2.2318 9 6 5.6524 0.4129 1.8139 10 6 6.1226 1.7233 2.4486 11 6 7.6520 1.7572 2.4750 12 6 8.1222 3.0673 3.1104 13 6 9.6286 3.1003 3.1370 14 1 10.1940 2.2699 2.7408 15 6 10.2849 4.1908 3.6671 16 7 9.5963 5.2019 4.1500 17 14 12.1521 4.2316 3.7007 18 1 12.6563 4.8501 2.4482 19 1 12.6090 5.0307 4.8661 20 1 12.6756 2.8466 3.8144 21 6 1.5718 -2.1536 1.2287 22 8 2.1627 -2.9751 0.5602 23 7 0.4966 -2.5215 1.9531 24 6 -0.3626 -1.6171 2.7312 25 6 -1.4450 -2.4835 3.4090 26 6 -0.7925 -3.8909 3.4381 27 6 -0.0091 -3.8983 2.1016 28 1 -0.3633 0.4346 0.9312 29 1 -0.3634 0.5891 -0.8420 30 1 -0.3633 -1.0239 -0.0892 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0124 -1.4324 0.9141 36 1 6.0240 -0.4279 2.3995 37 1 6.0354 0.3440 0.7957 38 1 5.7510 2.5644 1.8633 39 1 5.7397 1.7917 3.4668 40 1 8.0240 0.9161 3.0601 41 1 8.0346 1.6889 1.4567 42 1 7.7502 3.9086 2.5257 43 1 7.7395 3.1350 4.1288 44 1 10.0580 5.9690 4.5233 45 1 0.2299 -1.1022 3.4875 46 1 -0.8332 -0.8911 2.0682 47 1 -2.3608 -2.4951 2.8180 48 1 -1.6419 -2.1288 4.4206 49 1 -1.5515 -4.6732 3.4503 50 1 -0.1169 -3.9910 4.2875 51 1 -0.6727 -4.1501 1.2743 52 1 0.8203 -4.6039 2.1501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588460384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:11 Heat of formation + Delta-G solvation = -102.552934 kcal Electronic energy + Delta-G solvation = -28063.168358 eV Core-core repulsion = 24254.441263 eV Total energy + Delta-G solvation = -3808.727096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -41.07854 -39.60663 -37.87510 -36.30751 -34.81174 -33.54941 -32.55213 -32.17962 -29.88421 -29.66081 -27.67999 -27.23794 -25.39502 -23.88799 -22.29747 -21.85680 -20.98929 -20.34620 -19.96143 -19.44537 -17.85985 -17.17270 -16.63891 -16.35707 -16.07300 -16.00178 -15.52827 -15.00569 -14.44841 -14.32631 -14.11427 -13.99664 -13.84297 -13.52085 -13.34403 -13.01682 -12.83526 -12.72286 -12.57809 -12.45782 -12.06278 -11.88724 -11.80184 -11.66240 -11.65978 -11.54342 -11.30090 -11.27291 -10.99765 -10.94694 -10.50596 -10.48573 -10.38273 -10.21170 -9.79754 -9.58445 -9.20850 -9.18657 -9.09996 -8.95950 -8.28390 -5.93310 -3.95560 2.06510 2.38570 2.70150 3.21749 3.35602 3.41533 3.45010 3.84165 4.01928 4.28759 4.36146 4.49398 4.50948 4.60072 4.69891 4.79676 4.84992 4.92736 5.07700 5.12808 5.19524 5.25998 5.30391 5.32956 5.36732 5.40374 5.42067 5.42738 5.49947 5.58218 5.60246 5.69438 5.79175 5.83586 5.89147 6.01287 6.17056 6.21362 6.32125 6.35017 6.57806 6.87039 6.98460 7.04719 7.22828 7.42330 7.66196 7.76457 7.92597 8.08303 8.23898 8.50381 9.12159 9.67942 11.17989 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002012 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.854907 B =13915.928262 C =14218.584086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.138 4.138 4 C 0.137 3.863 5 H 0.105 0.895 6 N -0.724 5.724 7 C 0.517 3.483 8 O -0.529 6.529 9 C -0.138 4.138 10 C -0.101 4.101 11 C -0.111 4.111 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.895 5.895 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.532 3.468 22 O -0.534 6.534 23 N -0.615 5.615 24 C 0.086 3.914 25 C -0.131 4.131 26 C -0.135 4.135 27 C 0.104 3.896 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.408 0.592 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.069 0.931 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.823 -18.229 -5.320 32.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.118 4.118 3 C -0.195 4.195 4 C 0.028 3.972 5 H 0.123 0.877 6 N -0.379 5.379 7 C 0.305 3.695 8 O -0.404 6.404 9 C -0.178 4.178 10 C -0.139 4.139 11 C -0.149 4.149 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.072 0.928 15 C -0.146 4.146 16 N -0.535 5.535 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.320 3.680 22 O -0.410 6.410 23 N -0.350 5.350 24 C -0.037 4.037 25 C -0.169 4.169 26 C -0.173 4.173 27 C -0.018 4.018 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.243 0.757 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.104 0.896 50 H 0.096 0.904 51 H 0.087 0.913 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.857 -17.788 -5.307 32.648 hybrid contribution 1.208 -0.313 -0.105 1.252 sum -25.650 -18.102 -5.412 31.857 Atomic orbital electron populations 1.21997 0.94611 1.01719 1.02630 1.21454 0.95934 0.97705 0.96697 1.21873 1.01795 0.93860 1.02020 1.20877 0.82996 0.91948 1.01343 0.87694 1.45943 1.05038 1.22625 1.64325 1.21075 0.91146 0.81210 0.76080 1.90704 1.68556 1.35395 1.45748 1.21809 0.89838 1.02399 1.03792 1.21445 0.97472 0.94167 1.00861 1.21657 0.91908 1.00985 1.00314 1.19095 0.95547 0.91211 0.95845 1.21288 0.92087 1.03083 1.39306 0.92759 1.25045 0.98237 0.95779 0.95568 1.69976 1.35220 1.07413 1.40891 0.86612 0.86013 0.77961 0.77498 1.20719 1.21278 1.19929 1.20363 0.78985 0.90337 0.78343 1.90715 1.55780 1.53585 1.40955 1.48474 1.28431 1.09207 1.48909 1.22365 0.92336 0.93535 0.95466 1.22642 0.97661 0.94952 1.01677 1.22810 0.99718 0.97511 0.97218 1.22262 0.98385 0.83740 0.97394 0.91938 0.91626 0.92765 0.90384 0.92259 0.92962 0.91352 0.75659 0.89079 0.88993 0.91753 0.91806 0.93490 0.93454 0.96592 0.96610 0.93074 0.90829 0.90215 0.90276 0.89640 0.89567 0.90373 0.91270 0.90275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.60 37.16 0.28 -0.85 16 2 C -0.10 -0.96 2.67 -90.62 -0.24 -1.20 16 3 C -0.14 -1.55 7.71 37.16 0.29 -1.27 16 4 C 0.14 1.45 1.94 -69.08 -0.13 1.31 16 5 H 0.11 1.14 6.20 -51.93 -0.32 0.82 16 6 N -0.72 -8.31 4.91 -54.93 -0.27 -8.58 16 7 C 0.52 7.10 6.13 -10.99 -0.07 7.03 16 8 O -0.53 -8.76 13.12 5.55 0.07 -8.68 16 9 C -0.14 -1.88 5.70 -27.88 -0.16 -2.04 16 10 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 12 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 13 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 14 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 17 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 C 0.53 5.72 5.90 -10.99 -0.06 5.66 16 22 O -0.53 -7.29 16.63 5.56 0.09 -7.20 16 23 N -0.62 -5.04 3.15 -170.51 -0.54 -5.57 16 24 C 0.09 0.50 5.84 -3.06 -0.02 0.48 16 25 C -0.13 -0.49 6.95 -24.90 -0.17 -0.66 16 26 C -0.13 -0.56 7.08 -24.58 -0.17 -0.73 16 27 C 0.10 0.69 6.89 -2.52 -0.02 0.67 16 28 H 0.06 0.41 6.60 -51.93 -0.34 0.07 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.41 7.11 -51.92 -0.37 0.04 16 31 H 0.08 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.06 0.78 5.84 -51.93 -0.30 0.47 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.84 7.42 -51.93 -0.39 0.46 16 35 H 0.41 4.31 8.03 -40.82 -0.33 3.98 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 39 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 45 H 0.07 0.45 7.65 -51.93 -0.40 0.06 16 46 H 0.08 0.41 5.10 -51.93 -0.26 0.14 16 47 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 48 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 49 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 51 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 LS Contribution 403.83 15.07 6.09 6.09 Total: -1.00 -34.58 403.83 -9.56 -44.15 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -9.43 Total: -0.88 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -1.29 Total: -9.47 kcal Atomic # 7 Polarization: -41.00 SS G_CDS: -0.07 Total: -41.07 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.17 Total: -15.88 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.58 -9.56 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.407 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds