Wall clock time and date at job start Tue Mar 31 2020 13:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 C 1.53000 * 109.47034 * 120.00104 * 2 1 3 5 5 H 1.09000 * 109.46774 * 301.66887 * 4 2 1 6 6 N 1.46502 * 109.46889 * 181.67635 * 4 2 1 7 7 C 1.34774 * 120.00178 * 85.27359 * 6 4 2 8 8 O 1.21284 * 119.99858 * 359.72367 * 7 6 4 9 9 C 1.50701 * 119.99742 * 179.72279 * 7 6 4 10 10 C 1.53008 * 109.46741 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46873 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46873 * 180.02562 * 11 10 9 13 13 C 1.50701 * 109.46741 * 179.97438 * 12 11 10 14 14 H 1.07996 * 120.00180 * 359.97438 * 13 12 11 15 15 C 1.37874 * 119.99734 * 179.97438 * 13 12 11 16 16 N 1.31517 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00028 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46851 * 90.00572 * 17 15 13 19 19 H 1.48505 * 109.47397 * 210.00178 * 17 15 13 20 20 H 1.48500 * 109.47446 * 330.00700 * 17 15 13 21 21 C 1.50700 * 109.47385 * 61.67374 * 4 2 1 22 22 O 1.21279 * 119.99987 * 80.48448 * 21 4 2 23 23 N 1.34771 * 119.99767 * 260.48493 * 21 4 2 24 24 C 1.47023 * 125.65026 * 4.37694 * 23 21 4 25 25 C 1.54322 * 107.27673 * 180.96485 * 24 23 21 26 26 C 1.55157 * 102.85897 * 22.52697 * 25 24 23 27 27 C 1.47429 * 125.64418 * 184.67959 * 23 21 4 28 28 H 1.08994 * 109.47026 * 295.01905 * 1 2 3 29 29 H 1.08999 * 109.47378 * 55.02219 * 1 2 3 30 30 H 1.09007 * 109.46915 * 175.02273 * 1 2 3 31 31 H 1.09008 * 109.47175 * 239.99732 * 2 1 3 32 32 H 1.08996 * 109.47287 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46625 * 300.00351 * 3 2 1 34 34 H 1.09004 * 109.46916 * 59.99421 * 3 2 1 35 35 H 0.97006 * 120.00053 * 264.99333 * 6 4 2 36 36 H 1.09001 * 109.47203 * 299.99735 * 9 7 6 37 37 H 1.09001 * 109.47244 * 60.00279 * 9 7 6 38 38 H 1.09001 * 109.46959 * 299.99766 * 10 9 7 39 39 H 1.08992 * 109.47329 * 60.00016 * 10 9 7 40 40 H 1.09001 * 109.46904 * 299.99515 * 11 10 9 41 41 H 1.09001 * 109.47411 * 59.99977 * 11 10 9 42 42 H 1.09001 * 109.46959 * 299.99481 * 12 11 10 43 43 H 1.09001 * 109.47121 * 59.99799 * 12 11 10 44 44 H 0.97003 * 120.00124 * 179.97438 * 16 15 13 45 45 H 1.08999 * 109.88097 * 300.50841 * 24 23 21 46 46 H 1.09002 * 109.88022 * 61.67856 * 24 23 21 47 47 H 1.08996 * 110.92048 * 264.11268 * 25 24 23 48 48 H 1.08992 * 110.58830 * 140.78513 * 25 24 23 49 49 H 1.09006 * 111.00145 * 206.22904 * 26 25 24 50 50 H 1.09000 * 111.00862 * 82.37737 * 26 25 24 51 51 H 1.09001 * 110.36852 * 274.67324 * 27 23 21 52 52 H 1.08998 * 110.36568 * 36.89377 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6524 -0.2250 2.1389 6 7 3.5044 -0.6864 1.2696 7 6 4.1460 0.3798 1.7873 8 8 3.5109 1.3126 2.2318 9 6 5.6524 0.4129 1.8139 10 6 6.1226 1.7233 2.4486 11 6 7.6520 1.7572 2.4750 12 6 8.1222 3.0673 3.1104 13 6 9.6286 3.1003 3.1370 14 1 10.1940 2.2699 2.7408 15 6 10.2849 4.1908 3.6671 16 7 9.5963 5.2019 4.1500 17 14 12.1521 4.2316 3.7007 18 1 12.6563 4.8501 2.4482 19 1 12.6090 5.0307 4.8661 20 1 12.6756 2.8466 3.8144 21 6 1.5718 -2.1536 1.2287 22 8 2.1627 -2.9751 0.5602 23 7 0.4966 -2.5215 1.9531 24 6 -0.3626 -1.6171 2.7312 25 6 -1.4450 -2.4835 3.4090 26 6 -0.7925 -3.8909 3.4381 27 6 -0.0091 -3.8983 2.1016 28 1 -0.3633 0.4346 0.9312 29 1 -0.3634 0.5891 -0.8420 30 1 -0.3633 -1.0239 -0.0892 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 4.0124 -1.4324 0.9141 36 1 6.0240 -0.4279 2.3995 37 1 6.0354 0.3440 0.7957 38 1 5.7510 2.5644 1.8633 39 1 5.7397 1.7917 3.4668 40 1 8.0240 0.9161 3.0601 41 1 8.0346 1.6889 1.4567 42 1 7.7502 3.9086 2.5257 43 1 7.7395 3.1350 4.1288 44 1 10.0580 5.9690 4.5233 45 1 0.2299 -1.1022 3.4875 46 1 -0.8332 -0.8911 2.0682 47 1 -2.3608 -2.4951 2.8180 48 1 -1.6419 -2.1288 4.4206 49 1 -1.5515 -4.6732 3.4503 50 1 -0.1169 -3.9910 4.2875 51 1 -0.6727 -4.1501 1.2743 52 1 0.8203 -4.6039 2.1501 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588460384.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:09 Heat of formation + Delta-G solvation = -124.264307 kcal Electronic energy + Delta-G solvation = -28064.109834 eV Core-core repulsion = 24254.441263 eV Total energy + Delta-G solvation = -3809.668571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.92438 -40.55561 -38.56015 -37.27443 -36.49933 -34.66885 -34.40757 -32.76110 -31.52384 -30.20656 -28.71830 -28.07375 -27.03346 -24.67983 -23.90080 -22.31556 -21.90522 -21.62659 -21.31769 -20.23374 -18.70325 -18.42286 -17.82830 -17.53403 -17.23814 -16.96687 -16.53100 -16.42301 -15.92866 -15.41948 -15.10034 -14.70256 -14.53118 -14.39372 -14.35145 -14.20527 -13.77200 -13.65958 -13.57926 -13.50956 -13.32332 -13.26504 -13.07386 -12.81414 -12.62701 -12.34245 -12.25092 -12.20088 -12.14472 -12.13438 -12.03553 -11.78494 -11.58719 -11.37022 -11.34504 -11.15113 -11.07769 -10.76429 -10.54448 -10.16189 -9.77326 -8.18415 -6.30209 1.21959 1.40173 1.42321 1.53410 1.60585 1.67923 2.30232 2.42238 3.14094 3.20424 3.62328 3.66591 3.74886 3.79385 3.84494 4.03300 4.05008 4.14382 4.15818 4.21014 4.31016 4.45004 4.54212 4.60925 4.65493 4.67445 4.72557 4.80166 4.84016 4.85043 4.88462 4.89117 4.93246 4.96131 5.06639 5.09911 5.17931 5.20380 5.22123 5.30230 5.33047 5.34235 5.40092 5.42038 5.57726 5.79171 5.88799 6.26256 6.28696 6.42858 6.87345 6.87955 7.18457 7.39066 8.93680 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.002012 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.854907 B =13915.928262 C =14218.584086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.132 4.132 4 C 0.137 3.863 5 H 0.102 0.898 6 N -0.714 5.714 7 C 0.520 3.480 8 O -0.562 6.562 9 C -0.131 4.131 10 C -0.091 4.091 11 C -0.097 4.097 12 C 0.020 3.980 13 C -0.542 4.542 14 H 0.064 0.936 15 C -0.007 4.007 16 N -0.936 5.936 17 Si 0.969 3.031 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.261 1.261 21 C 0.531 3.469 22 O -0.569 6.569 23 N -0.612 5.612 24 C 0.077 3.923 25 C -0.124 4.124 26 C -0.127 4.127 27 C 0.097 3.903 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.414 0.586 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.058 0.942 41 H 0.058 0.942 42 H -0.014 1.014 43 H -0.014 1.014 44 H 0.263 0.737 45 H 0.068 0.932 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.097 0.903 49 H 0.107 0.893 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.410 -19.940 -5.705 34.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.190 4.190 4 C 0.029 3.971 5 H 0.120 0.880 6 N -0.369 5.369 7 C 0.309 3.691 8 O -0.440 6.440 9 C -0.170 4.170 10 C -0.130 4.130 11 C -0.135 4.135 12 C -0.017 4.017 13 C -0.580 4.580 14 H 0.082 0.918 15 C -0.204 4.204 16 N -0.577 5.577 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.185 1.185 21 C 0.319 3.681 22 O -0.449 6.449 23 N -0.345 5.345 24 C -0.045 4.045 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.025 4.025 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.251 0.749 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.072 0.928 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.125 0.875 50 H 0.091 0.909 51 H 0.095 0.905 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -27.484 -19.537 -5.688 34.197 hybrid contribution 1.320 0.233 0.038 1.341 sum -26.163 -19.305 -5.651 33.002 Atomic orbital electron populations 1.21956 0.92601 1.02161 1.03638 1.21411 0.97612 0.96389 0.95944 1.21792 1.00360 0.94893 1.01931 1.20951 0.82246 0.92267 1.01659 0.87967 1.45815 1.05726 1.22018 1.63299 1.21007 0.91156 0.81189 0.75783 1.90699 1.69139 1.36691 1.47480 1.21687 0.89889 1.00409 1.05033 1.21216 0.95329 0.96256 1.00156 1.21461 0.93828 0.97841 1.00371 1.19046 0.95004 0.93478 0.94200 1.21750 0.93270 1.03569 1.39373 0.91781 1.26079 1.04116 0.95268 0.94943 1.70127 1.37646 1.08191 1.41715 0.85397 0.78927 0.78621 0.77779 1.19728 1.20847 1.18477 1.20292 0.79504 0.89875 0.78451 1.90694 1.57180 1.54267 1.42734 1.48579 1.27676 1.10505 1.47774 1.22593 0.92589 0.93854 0.95453 1.22668 0.97234 0.93901 1.02378 1.22801 0.99761 0.98558 0.95338 1.22447 0.98267 0.82512 0.99278 0.90973 0.90639 0.92523 0.90954 0.94366 0.91714 0.92680 0.74934 0.86847 0.86746 0.93398 0.93449 0.92338 0.92286 0.99538 0.99546 0.92843 0.91350 0.89307 0.88825 0.88399 0.87477 0.90858 0.90468 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 7.60 71.98 0.55 -1.42 16 2 C -0.09 -1.77 2.67 -10.79 -0.03 -1.80 16 3 C -0.13 -2.97 7.71 71.98 0.55 -2.41 16 4 C 0.14 2.85 1.94 44.25 0.09 2.94 16 5 H 0.10 2.20 6.20 -2.39 -0.01 2.19 16 6 N -0.71 -16.10 4.91 -446.09 -2.19 -18.29 16 7 C 0.52 14.18 6.13 87.66 0.54 14.72 16 8 O -0.56 -19.00 13.12 -3.04 -0.04 -19.04 16 9 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 10 C -0.09 -3.30 4.50 30.60 0.14 -3.16 16 11 C -0.10 -4.05 5.15 30.60 0.16 -3.89 16 12 C 0.02 1.10 4.97 29.85 0.15 1.25 16 13 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 14 H 0.06 3.54 7.74 -2.91 -0.02 3.52 16 15 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 16 N -0.94 -59.10 13.29 21.45 0.28 -58.81 16 17 Si 0.97 45.25 29.54 68.60 2.03 47.28 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.53 11.18 5.90 87.66 0.52 11.70 16 22 O -0.57 -15.48 16.63 -3.03 -0.05 -15.53 16 23 N -0.61 -9.43 3.15 -811.78 -2.56 -11.98 16 24 C 0.08 0.77 5.84 86.73 0.51 1.28 16 25 C -0.12 -0.60 6.95 31.78 0.22 -0.38 16 26 C -0.13 -0.78 7.08 31.99 0.23 -0.55 16 27 C 0.10 1.17 6.89 86.86 0.60 1.77 16 28 H 0.07 0.84 6.60 -2.39 -0.02 0.82 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.75 7.11 -2.38 -0.02 0.73 16 31 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 32 H 0.04 1.00 5.84 -2.39 -0.01 0.99 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.05 1.37 7.42 -2.39 -0.02 1.36 16 35 H 0.41 8.43 8.03 -92.70 -0.74 7.69 16 36 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.11 2.50 8.14 -2.39 -0.02 2.49 16 38 H 0.05 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.05 1.84 8.10 -2.39 -0.02 1.82 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 42 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.07 0.78 7.65 -2.39 -0.02 0.76 16 46 H 0.09 0.74 5.10 -2.39 -0.01 0.72 16 47 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 48 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 49 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 50 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 51 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 Total: -1.00 -76.77 403.83 2.69 -74.08 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 0.14 Total: 16.97 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.08 Total: -14.67 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -4.46 Total: -89.09 kcal Atomic # 8 Polarization: -34.48 SS G_CDS: -0.09 Total: -34.57 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.77 2.69 -74.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588460384.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.187 kcal (2) G-P(sol) polarization free energy of solvation -76.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds