Wall clock time and date at job start Tue Mar 31 2020 13:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47426 * 2 1 4 4 C 1.52998 * 109.47255 * 120.00471 * 2 1 3 5 5 H 1.08997 * 109.47308 * 205.24891 * 4 2 1 6 6 C 1.50701 * 109.47176 * 85.25095 * 4 2 1 7 7 O 1.21283 * 119.99445 * 276.32487 * 6 4 2 8 8 N 1.34771 * 120.00299 * 96.32674 * 6 4 2 9 9 C 1.47022 * 125.64945 * 355.71837 * 8 6 4 10 10 C 1.54423 * 107.28116 * 181.09621 * 9 8 6 11 11 C 1.55158 * 102.89568 * 22.18392 * 10 9 8 12 12 O 1.42905 * 111.00219 * 82.59422 * 11 10 9 13 13 C 1.50694 * 111.00227 * 206.40598 * 11 10 9 14 14 H 1.07999 * 119.99868 * 115.42074 * 13 11 10 15 15 C 1.37881 * 120.00023 * 295.41596 * 13 11 10 16 16 N 1.31509 * 120.00417 * 0.02562 * 15 13 11 17 17 Si 1.86806 * 119.99849 * 180.02562 * 15 13 11 18 18 H 1.48508 * 109.46965 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47029 * 120.00010 * 17 15 13 20 20 H 1.48493 * 109.47172 * 240.00463 * 17 15 13 21 21 C 1.47424 * 125.65024 * 175.75805 * 8 6 4 22 22 N 1.46900 * 109.47174 * 325.24809 * 4 2 1 23 23 C 1.46845 * 110.99831 * 296.16106 * 22 4 2 24 24 C 1.53035 * 109.52196 * 174.16054 * 23 22 4 25 25 C 1.53119 * 109.28123 * 59.17947 * 24 23 22 26 26 C 1.53124 * 109.15542 * 302.34292 * 25 24 23 27 27 C 1.46844 * 111.00068 * 171.94812 * 22 4 2 28 28 H 1.08999 * 109.46945 * 300.93816 * 1 2 3 29 29 H 1.08999 * 109.47130 * 60.94377 * 1 2 3 30 30 H 1.08999 * 109.47355 * 180.94343 * 1 2 3 31 31 H 1.09004 * 109.47202 * 240.00229 * 2 1 3 32 32 H 1.08994 * 109.47392 * 207.07206 * 3 2 1 33 33 H 1.09002 * 109.47143 * 327.07978 * 3 2 1 34 34 H 1.08998 * 109.46763 * 87.07076 * 3 2 1 35 35 H 1.09010 * 109.87834 * 300.51168 * 9 8 6 36 36 H 1.09000 * 109.88605 * 61.51954 * 9 8 6 37 37 H 1.08994 * 110.72526 * 263.84332 * 10 9 8 38 38 H 1.09005 * 110.75985 * 140.53802 * 10 9 8 39 39 H 0.96705 * 113.99975 * 64.58357 * 12 11 10 40 40 H 0.96994 * 120.00041 * 179.97438 * 16 15 13 41 41 H 1.09000 * 110.36737 * 36.99810 * 21 8 6 42 42 H 1.08996 * 110.36680 * 274.67584 * 21 8 6 43 43 H 1.09004 * 109.46327 * 294.17106 * 23 22 4 44 44 H 1.08999 * 109.46812 * 54.14049 * 23 22 4 45 45 H 1.09002 * 109.50405 * 299.23296 * 24 23 22 46 46 H 1.09010 * 109.50427 * 179.11991 * 24 23 22 47 47 H 1.09001 * 109.52500 * 182.44224 * 25 24 23 48 48 H 1.08999 * 109.57388 * 62.27952 * 25 24 23 49 49 H 1.09002 * 109.50532 * 297.71313 * 26 25 24 50 50 H 1.09005 * 109.53261 * 177.61548 * 26 25 24 51 51 H 1.08998 * 109.46387 * 305.85915 * 27 22 4 52 52 H 1.08997 * 109.46285 * 65.83539 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.0374 -0.3581 1.4967 6 6 2.0966 -2.2040 0.9852 7 8 1.0990 -2.8815 1.1152 8 7 3.2555 -2.7770 0.6047 9 6 4.5114 -2.0660 0.3241 10 6 5.5526 -3.1243 -0.1008 11 6 4.6692 -4.3059 -0.5812 12 8 4.2397 -4.1090 -1.9299 13 6 5.3958 -5.6179 -0.4348 14 1 5.0262 -6.3664 0.2504 15 6 6.5326 -5.8628 -1.1756 16 7 6.9831 -4.9513 -2.0097 17 14 7.4330 -7.4896 -0.9946 18 1 6.7278 -8.3376 -0.0001 19 1 7.4639 -8.1866 -2.3054 20 1 8.8223 -7.2379 -0.5348 21 6 3.4738 -4.2206 0.4002 22 7 1.1304 -0.4582 2.3722 23 6 1.1198 0.9690 2.7176 24 6 0.0582 1.2280 3.7890 25 6 0.3747 0.3863 5.0283 26 6 0.4275 -1.0918 4.6316 27 6 1.4784 -1.2836 3.5358 28 1 -0.3633 0.5283 0.8815 29 1 -0.3633 0.4991 -0.8983 30 1 -0.3634 -1.0275 0.0169 31 1 1.8933 -0.5138 -0.8900 32 1 3.0238 1.4800 -0.4677 33 1 1.3479 2.0726 -0.5585 34 1 2.1116 1.8025 1.0263 35 1 4.3595 -1.3502 -0.4838 36 1 4.8517 -1.5468 1.2201 37 1 6.1677 -3.4228 0.7480 38 1 6.1730 -2.7505 -0.9155 39 1 4.9598 -4.1053 -2.5754 40 1 7.7829 -5.1235 -2.5306 41 1 2.5884 -4.6796 -0.0397 42 1 3.7231 -4.7041 1.3447 43 1 2.0991 1.2575 3.0995 44 1 0.8895 1.5562 1.8286 45 1 -0.9233 0.9527 3.4029 46 1 0.0613 2.2848 4.0564 47 1 -0.4028 0.5347 5.7777 48 1 1.3384 0.6881 5.4384 49 1 -0.5482 -1.4036 4.2588 50 1 0.6941 -1.6931 5.5009 51 1 1.5086 -2.3325 3.2411 52 1 2.4559 -0.9844 3.9140 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842467.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:42:03 Heat of formation + Delta-G solvation = -96.569379 kcal Electronic energy + Delta-G solvation = -30277.739206 eV Core-core repulsion = 26469.271577 eV Total energy + Delta-G solvation = -3808.467629 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 2.21 seconds Orbital eigenvalues (eV) -41.77061 -40.05553 -38.65405 -36.79108 -36.08770 -34.19633 -33.27288 -31.77860 -31.51002 -30.19206 -28.60029 -28.03080 -26.72155 -24.48615 -23.87377 -23.61192 -21.77971 -21.36301 -20.61424 -20.06395 -19.16121 -18.18054 -17.53123 -16.96371 -16.74990 -16.27957 -16.12012 -15.96018 -15.51421 -15.18965 -15.14328 -14.97414 -14.71909 -14.27462 -14.19760 -14.03163 -13.91821 -13.61988 -13.41498 -13.27932 -13.23634 -13.06670 -12.98725 -12.66588 -12.64789 -12.51936 -12.27367 -12.15133 -12.11396 -11.94707 -11.88608 -11.86144 -11.56851 -11.35859 -11.30069 -10.75006 -10.71982 -10.57346 -10.16749 -9.59247 -9.26581 -8.26338 -6.40988 1.39622 1.44207 1.53916 1.57258 1.94067 2.38649 2.86398 2.98495 3.43603 3.74045 3.81246 3.86474 3.91463 3.97755 4.01212 4.09190 4.18747 4.27617 4.30616 4.33017 4.41248 4.44774 4.55983 4.59848 4.61588 4.64209 4.71996 4.81857 4.84775 4.86551 4.92066 4.99320 5.04883 5.07133 5.12137 5.14107 5.20952 5.24219 5.24771 5.30255 5.41673 5.46250 5.49429 5.50025 5.59249 5.75114 5.97158 6.05440 6.16219 6.59802 6.64132 7.17445 7.30012 7.40506 8.80055 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.021194 B = 0.003341 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.789923 B = 8379.269826 C = 8963.726150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.082 4.082 3 C -0.156 4.156 4 C 0.088 3.912 5 H 0.069 0.931 6 C 0.524 3.476 7 O -0.571 6.571 8 N -0.613 5.613 9 C 0.108 3.892 10 C -0.126 4.126 11 C 0.236 3.764 12 O -0.594 6.594 13 C -0.562 4.562 14 H 0.054 0.946 15 C 0.038 3.962 16 N -0.907 5.907 17 Si 0.960 3.040 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.274 1.274 21 C 0.127 3.873 22 N -0.518 5.518 23 C 0.036 3.964 24 C -0.113 4.113 25 C -0.116 4.116 26 C -0.109 4.109 27 C 0.050 3.950 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.025 0.975 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.379 0.621 40 H 0.272 0.728 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.040 0.960 44 H 0.108 0.892 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.076 0.924 48 H 0.064 0.936 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.045 0.955 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.925 17.192 9.865 20.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.102 4.102 3 C -0.213 4.213 4 C -0.023 4.023 5 H 0.086 0.914 6 C 0.314 3.686 7 O -0.450 6.450 8 N -0.347 5.347 9 C -0.014 4.014 10 C -0.164 4.164 11 C 0.196 3.804 12 O -0.403 6.403 13 C -0.601 4.601 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.546 5.546 17 Si 0.786 3.214 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.199 1.199 21 C 0.004 3.996 22 N -0.244 5.244 23 C -0.090 4.090 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.078 4.078 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.229 0.771 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.058 0.942 44 H 0.126 0.874 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.095 0.905 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.089 0.911 51 H 0.064 0.936 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -8.436 16.820 9.983 21.301 hybrid contribution 2.054 -1.562 -0.343 2.604 sum -6.381 15.258 9.640 19.143 Atomic orbital electron populations 1.21688 0.93500 1.01028 1.02164 1.21056 0.97797 0.97294 0.94022 1.22271 1.01784 0.93348 1.03890 1.21628 0.96385 0.89585 0.94729 0.91381 1.20787 0.80982 0.90786 0.76094 1.90631 1.34848 1.65801 1.53763 1.48742 1.11110 1.08355 1.66447 1.22185 0.83335 0.95416 1.00493 1.22977 0.96843 0.95655 1.00954 1.19751 0.88391 0.92691 0.79573 1.86120 1.39514 1.95760 1.18884 1.21702 1.10707 1.02178 1.25465 0.92794 1.25595 0.96895 0.99935 0.93954 1.69708 1.24226 1.34854 1.25792 0.85477 0.78343 0.79693 0.77899 1.19937 1.20627 1.19887 1.22099 0.98080 0.81281 0.98160 1.61783 1.50284 1.07266 1.05061 1.22773 0.98802 0.87006 1.00459 1.21611 0.98661 1.00530 0.94275 1.21572 1.02197 0.93654 0.97964 1.21506 0.98487 0.98113 0.96603 1.22131 0.97396 0.97040 0.91236 0.90170 0.92246 0.95574 0.92892 0.92117 0.90428 0.89903 0.91195 0.89967 0.91758 0.90664 0.77053 0.91848 0.93915 0.91182 0.94210 0.87433 0.91743 0.89128 0.90539 0.91774 0.92398 0.91140 0.93629 0.94956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.34 71.98 0.60 -2.63 16 2 C -0.08 -2.09 2.64 -10.80 -0.03 -2.12 16 3 C -0.16 -2.68 8.55 71.98 0.62 -2.06 16 4 C 0.09 2.51 1.49 44.17 0.07 2.58 16 5 H 0.07 1.76 6.67 -2.39 -0.02 1.75 16 6 C 0.52 20.26 5.38 87.66 0.47 20.74 16 7 O -0.57 -26.31 15.36 -3.04 -0.05 -26.36 16 8 N -0.61 -24.67 3.33 -811.61 -2.70 -27.36 16 9 C 0.11 3.78 6.12 86.76 0.53 4.31 16 10 C -0.13 -5.31 5.52 31.82 0.18 -5.13 16 11 C 0.24 11.58 0.88 -10.15 -0.01 11.58 16 12 O -0.59 -31.07 13.17 -148.98 -1.96 -33.04 16 13 C -0.56 -29.71 8.25 25.60 0.21 -29.50 16 14 H 0.05 2.89 7.78 -2.91 -0.02 2.87 16 15 C 0.04 1.92 5.29 84.66 0.45 2.36 16 16 N -0.91 -46.08 10.76 21.45 0.23 -45.85 16 17 Si 0.96 41.11 29.54 68.60 2.03 43.14 16 18 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 19 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 C 0.13 5.91 6.10 86.85 0.53 6.44 16 22 N -0.52 -13.30 3.18 -875.54 -2.78 -16.08 16 23 C 0.04 0.64 3.34 86.33 0.29 0.93 16 24 C -0.11 -1.69 6.09 30.65 0.19 -1.50 16 25 C -0.12 -1.83 6.00 30.68 0.18 -1.65 16 26 C -0.11 -2.37 6.09 30.65 0.19 -2.18 16 27 C 0.05 1.35 5.08 86.33 0.44 1.79 16 28 H 0.08 1.81 5.54 -2.39 -0.01 1.80 16 29 H 0.06 1.29 8.13 -2.39 -0.02 1.27 16 30 H 0.02 0.85 7.64 -2.39 -0.02 0.83 16 31 H 0.05 1.60 7.90 -2.39 -0.02 1.58 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.11 7.87 -2.39 -0.02 1.09 16 34 H 0.08 1.20 4.66 -2.39 -0.01 1.19 16 35 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 36 H 0.08 2.37 7.74 -2.39 -0.02 2.35 16 37 H 0.06 2.72 8.03 -2.39 -0.02 2.70 16 38 H 0.07 3.32 7.68 -2.38 -0.02 3.30 16 39 H 0.38 19.82 7.25 -74.05 -0.54 19.28 16 40 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 41 H 0.04 2.19 8.00 -2.39 -0.02 2.17 16 42 H 0.07 3.20 8.03 -2.39 -0.02 3.18 16 43 H 0.04 0.66 8.09 -2.38 -0.02 0.64 16 44 H 0.11 1.68 3.74 -2.39 -0.01 1.67 16 45 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 47 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 51 H 0.05 1.59 5.92 -2.39 -0.01 1.57 16 52 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -62.22 384.08 0.02 -62.20 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: 0.36 Total: 39.41 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 4.90 Total: 3.95 kcal Atomic # 7 Polarization: -84.04 SS G_CDS: -5.25 Total: -89.29 kcal Atomic # 8 Polarization: -57.39 SS G_CDS: -2.01 Total: -59.40 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -62.22 0.02 -62.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842467.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.372 kcal (2) G-P(sol) polarization free energy of solvation -62.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.21 seconds