Wall clock time and date at job start Tue Mar 31 2020 14:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 C 1.53002 * 109.47372 * 239.99594 * 2 1 3 5 5 O 1.42912 * 109.46783 * 119.99770 * 2 1 3 6 6 C 1.42895 * 113.99903 * 60.00159 * 5 2 1 7 7 H 1.09001 * 115.56332 * 4.31124 * 6 5 2 8 8 C 1.52994 * 117.49782 * 218.62091 * 6 5 2 9 9 C 1.52993 * 117.50130 * 149.99768 * 6 5 2 10 10 H 1.09007 * 117.49716 * 359.97233 * 9 6 5 11 11 C 1.50700 * 117.50390 * 214.98182 * 9 6 5 12 12 O 1.21286 * 119.99752 * 359.97438 * 11 9 6 13 13 N 1.34773 * 120.00378 * 179.72535 * 11 9 6 14 14 C 1.46497 * 120.00138 * 180.27301 * 13 11 9 15 15 C 1.53005 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.49770 * 55.06067 * 15 14 13 17 17 C 1.53038 * 109.50089 * 175.16261 * 15 14 13 18 18 C 1.53037 * 109.53971 * 181.31599 * 17 15 14 19 19 C 1.53189 * 109.31214 * 298.63356 * 18 17 15 20 20 N 1.46922 * 108.77488 * 54.63667 * 19 18 17 21 21 C 1.36936 * 120.63101 * 126.41525 * 20 19 18 22 22 H 1.08008 * 120.00050 * 332.56873 * 21 20 19 23 23 C 1.38808 * 120.00340 * 152.56707 * 21 20 19 24 24 N 1.31613 * 120.00433 * 159.33081 * 23 21 20 25 25 Si 1.86800 * 119.99831 * 339.32946 * 23 21 20 26 26 H 1.48504 * 109.46810 * 92.94989 * 25 23 21 27 27 H 1.48500 * 109.47274 * 212.94870 * 25 23 21 28 28 H 1.48502 * 109.47365 * 332.95488 * 25 23 21 29 29 C 1.46922 * 118.73644 * 306.38778 * 20 19 18 30 30 H 1.09007 * 109.47150 * 300.00191 * 1 2 3 31 31 H 1.09000 * 109.47191 * 60.00219 * 1 2 3 32 32 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47572 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47156 * 300.00249 * 3 2 1 35 35 H 1.09007 * 109.47165 * 59.99818 * 3 2 1 36 36 H 1.09000 * 109.47100 * 300.00438 * 4 2 1 37 37 H 1.09000 * 109.46810 * 59.99953 * 4 2 1 38 38 H 1.08997 * 109.47015 * 179.97438 * 4 2 1 39 39 H 1.09002 * 117.49968 * 145.02369 * 8 6 5 40 40 H 1.08999 * 117.50430 * 359.97438 * 8 6 5 41 41 H 0.97003 * 119.99769 * 0.27253 * 13 11 9 42 42 H 1.08998 * 109.47099 * 299.99236 * 14 13 11 43 43 H 1.09000 * 109.47361 * 59.99815 * 14 13 11 44 44 H 1.09010 * 109.45652 * 301.33948 * 17 15 14 45 45 H 1.09001 * 109.45916 * 61.28770 * 17 15 14 46 46 H 1.09009 * 109.49597 * 178.68410 * 18 17 15 47 47 H 1.09000 * 109.52638 * 58.60514 * 18 17 15 48 48 H 1.09005 * 109.58523 * 294.84706 * 19 18 17 49 49 H 1.09006 * 109.58456 * 174.42553 * 19 18 17 50 50 H 0.97000 * 120.00285 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.59095 * 293.81789 * 29 20 19 52 52 H 1.09006 * 109.58585 * 173.40044 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 1.0196 -2.4152 0.4133 8 6 1.2106 -2.5614 2.6518 9 6 2.5133 -3.0124 1.9883 10 1 3.4463 -2.6164 2.3895 11 6 2.5771 -4.4259 1.4696 12 8 1.9067 -4.7515 0.5128 13 7 3.3829 -5.3269 2.0658 14 6 3.4493 -6.6993 1.5578 15 6 4.4310 -7.5102 2.4062 16 1 4.1413 -7.4497 3.4553 17 6 4.4111 -8.9719 1.9535 18 6 5.3684 -9.7902 2.8231 19 6 6.7924 -9.2511 2.6543 20 7 6.7910 -7.8116 2.9484 21 6 7.6559 -7.2873 3.8715 22 1 8.0161 -7.9012 4.6839 23 6 8.0699 -5.9668 3.7632 24 7 8.5486 -5.3387 4.8161 25 14 7.9477 -5.0813 2.1230 26 1 6.6540 -4.3561 2.0472 27 1 9.0662 -4.1124 1.9990 28 1 8.0256 -6.0713 1.0188 29 6 5.8444 -6.9454 2.2328 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 0.3996 -3.2871 2.7132 40 1 1.2866 -1.8688 3.4900 41 1 3.9188 -5.0665 2.8313 42 1 2.4605 -7.1547 1.6111 43 1 3.7886 -6.6874 0.5220 44 1 3.4008 -9.3691 2.0528 45 1 4.7244 -9.0336 0.9113 46 1 5.3362 -10.8354 2.5153 47 1 5.0703 -9.7094 3.8684 48 1 7.1258 -9.4145 1.6295 49 1 7.4616 -9.7646 3.3448 50 1 8.8375 -4.4158 4.7404 51 1 6.1006 -6.9205 1.1736 52 1 5.8882 -5.9372 2.6450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598687622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:16 Heat of formation + Delta-G solvation = -47.309277 kcal Electronic energy + Delta-G solvation = -28648.243348 eV Core-core repulsion = 24841.911797 eV Total energy + Delta-G solvation = -3806.331551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.18507 -39.08729 -38.10064 -35.92737 -34.76471 -33.11046 -32.74754 -31.13374 -30.54942 -27.77049 -27.61202 -26.35974 -25.32008 -23.70947 -22.51963 -22.33613 -20.92446 -20.18773 -20.05943 -19.32402 -17.60625 -16.88809 -16.34827 -16.22367 -15.58222 -15.31952 -15.09606 -14.97011 -14.23275 -14.16177 -13.96323 -13.70018 -13.34499 -13.31062 -13.29414 -12.92004 -12.75264 -12.63189 -12.41770 -12.37049 -12.17039 -12.11358 -12.06317 -11.98861 -11.63354 -11.48481 -11.10686 -10.90021 -10.80428 -10.62401 -10.54702 -10.52978 -10.15464 -9.99163 -9.80180 -9.72187 -9.49199 -9.30093 -8.91364 -8.65136 -7.01115 -5.99354 -3.34963 2.52033 2.96804 3.25838 3.45867 3.48386 3.52474 3.78508 4.47711 4.49712 4.56402 4.66370 4.72692 4.74750 4.79659 4.93724 5.03434 5.14933 5.21745 5.23385 5.27180 5.29654 5.31855 5.41763 5.44828 5.53230 5.56218 5.59196 5.60463 5.68445 5.76164 5.81223 5.83388 5.86775 5.98852 6.01772 6.03805 6.08246 6.11518 6.28498 6.31838 6.51481 6.53715 6.57401 6.66667 6.70707 6.94569 7.08208 7.62590 7.92150 8.28985 8.29902 8.90238 9.67777 10.06273 11.16498 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003193 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.037566 B = 8767.399658 C = 9942.067898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.107 3.893 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.343 6.343 6 C 0.055 3.945 7 H 0.126 0.874 8 C -0.155 4.155 9 C -0.197 4.197 10 H 0.130 0.870 11 C 0.545 3.455 12 O -0.552 6.552 13 N -0.718 5.718 14 C 0.126 3.874 15 C -0.119 4.119 16 H 0.080 0.920 17 C -0.101 4.101 18 C -0.134 4.134 19 C 0.146 3.854 20 N -0.606 5.606 21 C -0.260 4.260 22 H 0.086 0.914 23 C 0.024 3.976 24 N -0.907 5.907 25 Si 0.879 3.121 26 H -0.288 1.288 27 H -0.303 1.303 28 H -0.272 1.272 29 C 0.134 3.866 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.407 0.593 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.058 0.942 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.022 0.978 49 H 0.062 0.938 50 H 0.263 0.737 51 H 0.025 0.975 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.568 6.644 -8.347 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.068 3.932 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.261 6.261 6 C -0.004 4.004 7 H 0.144 0.856 8 C -0.193 4.193 9 C -0.218 4.218 10 H 0.148 0.852 11 C 0.331 3.669 12 O -0.431 6.431 13 N -0.369 5.369 14 C 0.002 3.998 15 C -0.140 4.140 16 H 0.099 0.901 17 C -0.139 4.139 18 C -0.174 4.174 19 C 0.020 3.980 20 N -0.329 5.329 21 C -0.388 4.388 22 H 0.104 0.896 23 C -0.175 4.175 24 N -0.550 5.550 25 Si 0.710 3.290 26 H -0.216 1.216 27 H -0.231 1.231 28 H -0.197 1.197 29 C 0.008 3.992 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.243 0.757 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.040 0.960 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.043 0.957 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.795 6.624 -8.812 20.090 hybrid contribution 0.316 0.594 -0.622 0.916 sum -16.478 7.218 -9.434 20.313 Atomic orbital electron populations 1.22466 0.95352 1.02818 1.02749 1.21581 0.93342 0.93029 0.85231 1.21767 1.02188 0.93068 1.02495 1.22491 1.02518 1.01289 0.97482 1.87914 1.73497 1.21672 1.43045 1.22507 0.99041 0.82300 0.96562 0.85647 1.23425 0.95957 1.02596 0.97279 1.22718 0.98480 0.93417 1.07235 0.85191 1.19529 0.79043 0.85704 0.82593 1.90653 1.44417 1.80433 1.27567 1.46032 1.44959 1.11318 1.34596 1.21466 0.99461 0.80637 0.98236 1.21979 0.96763 0.95309 0.99939 0.90129 1.21344 0.98914 0.94049 0.99580 1.21989 0.97590 0.97807 0.99966 1.20963 0.93957 0.85022 0.98045 1.44346 1.38893 1.02497 1.47174 1.18942 1.20785 0.96409 1.02637 0.89621 1.25269 0.98395 0.96931 0.96891 1.69829 1.45997 1.11239 1.27905 0.87022 0.76124 0.79201 0.86664 1.21597 1.23110 1.19718 1.21369 0.87404 0.95041 0.95402 0.91647 0.91511 0.91973 0.91648 0.90994 0.91741 0.91674 0.91505 0.91583 0.87619 0.87135 0.75747 0.91646 0.91688 0.92765 0.92345 0.92573 0.91926 0.96024 0.91906 0.92734 0.95697 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.44 8.38 37.16 0.31 -1.13 16 2 C 0.11 1.05 1.11 -90.62 -0.10 0.95 16 3 C -0.14 -1.14 8.84 37.16 0.33 -0.81 16 4 C -0.18 -1.78 8.38 37.16 0.31 -1.46 16 5 O -0.34 -4.25 10.24 -35.23 -0.36 -4.61 16 6 C 0.05 0.67 4.47 -26.74 -0.12 0.55 16 7 H 0.13 1.56 5.15 -51.93 -0.27 1.30 16 8 C -0.15 -1.71 10.18 -26.74 -0.27 -1.99 16 9 C -0.20 -2.66 6.14 -91.78 -0.56 -3.22 16 10 H 0.13 1.77 8.14 -51.93 -0.42 1.34 16 11 C 0.55 8.60 7.61 -10.99 -0.08 8.51 16 12 O -0.55 -9.95 16.26 5.55 0.09 -9.85 16 13 N -0.72 -11.24 5.33 -60.29 -0.32 -11.56 16 14 C 0.13 1.95 5.07 -4.04 -0.02 1.93 16 15 C -0.12 -1.99 2.38 -90.50 -0.21 -2.20 16 16 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 17 C -0.10 -1.49 5.17 -26.69 -0.14 -1.63 16 18 C -0.13 -2.10 6.08 -26.61 -0.16 -2.26 16 19 C 0.15 2.80 6.52 -3.71 -0.02 2.78 16 20 N -0.61 -14.03 2.77 -172.32 -0.48 -14.51 16 21 C -0.26 -7.10 10.03 -15.06 -0.15 -7.25 16 22 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 23 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 24 N -0.91 -27.25 13.97 55.49 0.78 -26.47 16 25 Si 0.88 22.18 24.35 -169.99 -4.14 18.04 16 26 H -0.29 -6.87 6.62 56.52 0.37 -6.50 16 27 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 28 H -0.27 -6.87 6.64 56.52 0.38 -6.50 16 29 C 0.13 2.80 3.29 -3.71 -0.01 2.79 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.53 6.71 -51.93 -0.35 0.18 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.41 6.29 7.70 -40.82 -0.31 5.98 16 42 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 50 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 51 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 52 H 0.07 1.59 3.71 -51.93 -0.19 1.39 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -31.74 399.88 -8.87 -40.61 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -9.46 Total: 6.20 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: -1.00 Total: -3.86 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.02 Total: -52.54 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.27 Total: -14.47 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.74 -8.87 -40.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.703 kcal (2) G-P(sol) polarization free energy of solvation -31.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds