Wall clock time and date at job start Tue Mar 31 2020 14:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47319 * 2 1 4 4 C 1.53002 * 109.47372 * 239.99594 * 2 1 3 5 5 O 1.42912 * 109.46783 * 119.99770 * 2 1 3 6 6 C 1.42895 * 113.99903 * 60.00159 * 5 2 1 7 7 H 1.09001 * 115.56332 * 4.31124 * 6 5 2 8 8 C 1.52994 * 117.49782 * 218.62091 * 6 5 2 9 9 C 1.52993 * 117.50130 * 149.99768 * 6 5 2 10 10 H 1.09007 * 117.49716 * 359.97233 * 9 6 5 11 11 C 1.50700 * 117.50390 * 214.98182 * 9 6 5 12 12 O 1.21286 * 119.99752 * 359.97438 * 11 9 6 13 13 N 1.34773 * 120.00378 * 179.72535 * 11 9 6 14 14 C 1.46497 * 120.00138 * 180.27301 * 13 11 9 15 15 C 1.53005 * 109.47135 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.49770 * 55.06067 * 15 14 13 17 17 C 1.53038 * 109.50089 * 175.16261 * 15 14 13 18 18 C 1.53037 * 109.53971 * 181.31599 * 17 15 14 19 19 C 1.53189 * 109.31214 * 298.63356 * 18 17 15 20 20 N 1.46922 * 108.77488 * 54.63667 * 19 18 17 21 21 C 1.36936 * 120.63101 * 126.41525 * 20 19 18 22 22 H 1.08008 * 120.00050 * 332.56873 * 21 20 19 23 23 C 1.38808 * 120.00340 * 152.56707 * 21 20 19 24 24 N 1.31613 * 120.00433 * 159.33081 * 23 21 20 25 25 Si 1.86800 * 119.99831 * 339.32946 * 23 21 20 26 26 H 1.48504 * 109.46810 * 92.94989 * 25 23 21 27 27 H 1.48500 * 109.47274 * 212.94870 * 25 23 21 28 28 H 1.48502 * 109.47365 * 332.95488 * 25 23 21 29 29 C 1.46922 * 118.73644 * 306.38778 * 20 19 18 30 30 H 1.09007 * 109.47150 * 300.00191 * 1 2 3 31 31 H 1.09000 * 109.47191 * 60.00219 * 1 2 3 32 32 H 1.09000 * 109.47366 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47572 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47156 * 300.00249 * 3 2 1 35 35 H 1.09007 * 109.47165 * 59.99818 * 3 2 1 36 36 H 1.09000 * 109.47100 * 300.00438 * 4 2 1 37 37 H 1.09000 * 109.46810 * 59.99953 * 4 2 1 38 38 H 1.08997 * 109.47015 * 179.97438 * 4 2 1 39 39 H 1.09002 * 117.49968 * 145.02369 * 8 6 5 40 40 H 1.08999 * 117.50430 * 359.97438 * 8 6 5 41 41 H 0.97003 * 119.99769 * 0.27253 * 13 11 9 42 42 H 1.08998 * 109.47099 * 299.99236 * 14 13 11 43 43 H 1.09000 * 109.47361 * 59.99815 * 14 13 11 44 44 H 1.09010 * 109.45652 * 301.33948 * 17 15 14 45 45 H 1.09001 * 109.45916 * 61.28770 * 17 15 14 46 46 H 1.09009 * 109.49597 * 178.68410 * 18 17 15 47 47 H 1.09000 * 109.52638 * 58.60514 * 18 17 15 48 48 H 1.09005 * 109.58523 * 294.84706 * 19 18 17 49 49 H 1.09006 * 109.58456 * 174.42553 * 19 18 17 50 50 H 0.97000 * 120.00285 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.59095 * 293.81789 * 29 20 19 52 52 H 1.09006 * 109.58585 * 173.40044 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0063 -0.6737 1.1669 6 6 1.5846 -2.0355 1.2646 7 1 1.0196 -2.4152 0.4133 8 6 1.2106 -2.5614 2.6518 9 6 2.5133 -3.0124 1.9883 10 1 3.4463 -2.6164 2.3895 11 6 2.5771 -4.4259 1.4696 12 8 1.9067 -4.7515 0.5128 13 7 3.3829 -5.3269 2.0658 14 6 3.4493 -6.6993 1.5578 15 6 4.4310 -7.5102 2.4062 16 1 4.1413 -7.4497 3.4553 17 6 4.4111 -8.9719 1.9535 18 6 5.3684 -9.7902 2.8231 19 6 6.7924 -9.2511 2.6543 20 7 6.7910 -7.8116 2.9484 21 6 7.6559 -7.2873 3.8715 22 1 8.0161 -7.9012 4.6839 23 6 8.0699 -5.9668 3.7632 24 7 8.5486 -5.3387 4.8161 25 14 7.9477 -5.0813 2.1230 26 1 6.6540 -4.3561 2.0472 27 1 9.0662 -4.1124 1.9990 28 1 8.0256 -6.0713 1.0188 29 6 5.8444 -6.9454 2.2328 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6767 -0.2075 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 0.3996 -3.2871 2.7132 40 1 1.2866 -1.8688 3.4900 41 1 3.9188 -5.0665 2.8313 42 1 2.4605 -7.1547 1.6111 43 1 3.7886 -6.6874 0.5220 44 1 3.4008 -9.3691 2.0528 45 1 4.7244 -9.0336 0.9113 46 1 5.3362 -10.8354 2.5153 47 1 5.0703 -9.7094 3.8684 48 1 7.1258 -9.4145 1.6295 49 1 7.4616 -9.7646 3.3448 50 1 8.8375 -4.4158 4.7404 51 1 6.1006 -6.9205 1.1736 52 1 5.8882 -5.9372 2.6450 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598687622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:15 Heat of formation + Delta-G solvation = -67.617216 kcal Electronic energy + Delta-G solvation = -28649.123966 eV Core-core repulsion = 24841.911797 eV Total energy + Delta-G solvation = -3807.212169 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.30843 -40.13216 -39.49423 -36.91665 -36.16434 -34.84580 -33.60927 -32.87334 -32.09327 -28.45077 -28.31017 -27.68527 -27.15617 -24.95036 -23.96681 -23.34976 -22.34221 -21.40284 -20.97691 -20.70684 -18.86220 -18.60762 -17.51585 -17.32577 -17.12355 -16.48009 -16.29641 -15.88912 -15.83397 -15.48985 -15.26972 -15.04171 -14.81052 -14.58005 -14.44282 -14.11631 -13.94301 -13.79530 -13.54048 -13.42740 -13.35708 -13.12134 -13.08380 -12.87041 -12.84213 -12.68412 -12.59165 -12.22034 -12.10660 -11.88585 -11.76872 -11.71275 -11.61488 -11.42316 -11.37429 -11.28204 -11.01488 -10.67379 -10.23414 -10.17174 -8.93887 -8.18983 -5.49590 1.23028 1.35027 1.37382 1.44247 1.93112 2.36181 2.54675 2.78110 3.01989 3.31006 3.59493 3.68782 3.80899 3.83427 3.90339 3.91203 3.95050 3.99928 4.02032 4.10513 4.29545 4.34080 4.44368 4.47637 4.59078 4.60246 4.64852 4.70386 4.73892 4.75467 4.77250 4.85595 4.87782 4.89826 4.90925 4.96872 4.98031 5.09142 5.13699 5.18517 5.22950 5.29471 5.29831 5.33989 5.39268 5.58265 5.85809 6.11519 6.23926 6.38714 6.90546 7.06898 7.61059 8.02198 9.00864 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014400 B = 0.003193 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.037566 B = 8767.399658 C = 9942.067898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 C -0.136 4.136 4 C -0.178 4.178 5 O -0.360 6.360 6 C 0.058 3.942 7 H 0.123 0.877 8 C -0.134 4.134 9 C -0.216 4.216 10 H 0.125 0.875 11 C 0.545 3.455 12 O -0.576 6.576 13 N -0.721 5.721 14 C 0.131 3.869 15 C -0.106 4.106 16 H 0.075 0.925 17 C -0.099 4.099 18 C -0.125 4.125 19 C 0.137 3.863 20 N -0.621 5.621 21 C -0.246 4.246 22 H 0.055 0.945 23 C -0.027 4.027 24 N -0.952 5.952 25 Si 0.937 3.063 26 H -0.271 1.271 27 H -0.314 1.314 28 H -0.271 1.271 29 C 0.131 3.869 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.116 0.884 40 H 0.124 0.876 41 H 0.407 0.593 42 H 0.083 0.917 43 H 0.059 0.941 44 H 0.086 0.914 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.054 0.946 48 H 0.031 0.969 49 H 0.054 0.946 50 H 0.262 0.738 51 H 0.022 0.978 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.056 6.469 -9.864 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.058 3.942 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.279 6.279 6 C -0.001 4.001 7 H 0.140 0.860 8 C -0.171 4.171 9 C -0.237 4.237 10 H 0.143 0.857 11 C 0.333 3.667 12 O -0.457 6.457 13 N -0.372 5.372 14 C 0.008 3.992 15 C -0.126 4.126 16 H 0.093 0.907 17 C -0.137 4.137 18 C -0.163 4.163 19 C 0.012 3.988 20 N -0.345 5.345 21 C -0.376 4.376 22 H 0.073 0.927 23 C -0.222 4.222 24 N -0.598 5.598 25 Si 0.767 3.233 26 H -0.197 1.197 27 H -0.243 1.243 28 H -0.196 1.196 29 C 0.006 3.994 30 H 0.086 0.914 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.134 0.866 40 H 0.142 0.858 41 H 0.242 0.758 42 H 0.101 0.899 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.072 0.928 48 H 0.049 0.951 49 H 0.072 0.928 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.313 6.418 -10.352 22.833 hybrid contribution 1.117 0.572 -0.138 1.262 sum -18.196 6.990 -10.490 22.136 Atomic orbital electron populations 1.22428 0.93903 1.02784 1.03821 1.21863 0.94582 0.93460 0.84257 1.21797 1.01544 0.92264 1.03730 1.22481 1.01568 1.00842 0.98686 1.87896 1.74092 1.21563 1.44320 1.22476 0.98278 0.82211 0.97167 0.85967 1.23513 0.94425 1.02194 0.96992 1.22711 0.99453 0.92471 1.09113 0.85688 1.19838 0.78401 0.86383 0.82076 1.90633 1.45470 1.81026 1.28589 1.46118 1.44889 1.11586 1.34559 1.21427 0.99833 0.80495 0.97477 1.21798 0.93932 0.96830 1.00048 0.90662 1.21381 1.00483 0.92213 0.99575 1.21888 0.94874 0.99668 0.99896 1.21197 0.96655 0.82749 0.98193 1.44506 1.38875 1.04392 1.46725 1.18894 1.20453 0.95920 1.02310 0.92728 1.25771 0.99185 0.97913 0.99324 1.69942 1.48536 1.11659 1.29705 0.86080 0.76343 0.78011 0.82897 1.19730 1.24296 1.19630 1.21367 0.89543 0.94108 0.94398 0.91376 0.89646 0.92544 0.92699 0.88750 0.91526 0.93050 0.89327 0.93010 0.86566 0.85797 0.75774 0.89903 0.92218 0.89589 0.91609 0.89200 0.92762 0.95091 0.92771 0.92934 0.96050 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 8.38 71.98 0.60 -1.87 16 2 C 0.10 1.77 1.11 -10.79 -0.01 1.76 16 3 C -0.14 -2.03 8.84 71.98 0.64 -1.40 16 4 C -0.18 -3.35 8.38 71.98 0.60 -2.75 16 5 O -0.36 -8.63 10.24 -148.98 -1.53 -10.16 16 6 C 0.06 1.37 4.47 30.59 0.14 1.50 16 7 H 0.12 2.97 5.15 -2.39 -0.01 2.96 16 8 C -0.13 -2.75 10.18 30.59 0.31 -2.44 16 9 C -0.22 -5.68 6.14 -11.54 -0.07 -5.75 16 10 H 0.13 3.38 8.14 -2.38 -0.02 3.36 16 11 C 0.55 16.71 7.61 87.66 0.67 17.37 16 12 O -0.58 -20.20 16.26 -3.05 -0.05 -20.25 16 13 N -0.72 -21.74 5.33 -463.06 -2.47 -24.21 16 14 C 0.13 3.78 5.07 86.38 0.44 4.21 16 15 C -0.11 -3.29 2.38 -10.72 -0.03 -3.32 16 16 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 17 C -0.10 -2.56 5.17 30.62 0.16 -2.40 16 18 C -0.12 -3.52 6.08 30.67 0.19 -3.33 16 19 C 0.14 5.07 6.52 86.36 0.56 5.63 16 20 N -0.62 -28.52 2.77 -699.10 -1.94 -30.46 16 21 C -0.25 -13.75 10.03 84.03 0.84 -12.91 16 22 H 0.05 3.33 8.06 -2.91 -0.02 3.31 16 23 C -0.03 -1.55 5.23 84.86 0.44 -1.10 16 24 N -0.95 -59.01 13.97 21.65 0.30 -58.71 16 25 Si 0.94 46.72 24.35 68.60 1.67 48.39 16 26 H -0.27 -12.55 6.62 99.48 0.66 -11.89 16 27 H -0.31 -16.09 7.11 99.48 0.71 -15.39 16 28 H -0.27 -13.32 6.64 99.48 0.66 -12.66 16 29 C 0.13 5.34 3.29 86.36 0.28 5.63 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.88 6.71 -2.39 -0.02 0.86 16 33 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.05 1.09 6.53 -2.39 -0.02 1.08 16 37 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.41 12.33 7.70 -92.71 -0.71 11.62 16 42 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 47 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 48 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 49 H 0.05 2.06 7.93 -2.38 -0.02 2.04 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.02 0.90 7.08 -2.39 -0.02 0.88 16 52 H 0.05 2.23 3.71 -2.38 -0.01 2.23 16 Total: -1.00 -69.69 399.88 1.84 -67.85 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.08 Total: 28.70 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 5.77 Total: -1.17 kcal Atomic # 7 Polarization: -109.27 SS G_CDS: -4.10 Total: -113.37 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -1.58 Total: -30.40 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 1.67 Total: 48.39 kcal Total: -69.69 1.84 -67.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598687622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.232 kcal (2) G-P(sol) polarization free energy of solvation -69.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds