Wall clock time and date at job start Tue Mar 31 2020 14:22:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50695 * 120.00225 * 2 1
4 4 C 1.53001 * 109.47071 * 125.00080 * 3 2 1
5 5 O 1.42904 * 109.46908 * 179.97438 * 4 3 2
6 6 C 1.42906 * 113.99741 * 179.97438 * 5 4 3
7 7 C 1.53000 * 109.46804 * 180.02562 * 6 5 4
8 8 C 1.53000 * 109.47098 * 180.02562 * 7 6 5
9 9 C 1.52994 * 109.47480 * 179.97438 * 8 7 6
10 10 C 1.50696 * 109.47424 * 179.97438 * 9 8 7
11 11 O 1.21287 * 119.99701 * 0.02562 * 10 9 8
12 12 N 1.34774 * 120.00326 * 179.97438 * 10 9 8
13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9
14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10
15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12
16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13
17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14
18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15
19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15
20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16
21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16
22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17
23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17
24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17
25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14
26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10
27 27 H 1.07999 * 119.99418 * 0.02562 * 1 2 3
28 28 H 1.07998 * 120.00530 * 180.02562 * 1 2 3
29 29 H 1.08007 * 119.99635 * 179.97438 * 2 1 3
30 30 H 1.08998 * 109.47404 * 5.00062 * 3 2 1
31 31 H 1.09002 * 109.46708 * 244.99810 * 3 2 1
32 32 H 1.08998 * 109.47021 * 59.99748 * 4 3 2
33 33 H 1.08996 * 109.46941 * 300.00146 * 4 3 2
34 34 H 1.09003 * 109.46861 * 60.00360 * 6 5 4
35 35 H 1.08999 * 109.47191 * 300.00419 * 6 5 4
36 36 H 1.08994 * 109.47550 * 60.00138 * 7 6 5
37 37 H 1.08999 * 109.46811 * 300.00221 * 7 6 5
38 38 H 1.09003 * 109.46860 * 59.99816 * 8 7 6
39 39 H 1.08999 * 109.46898 * 300.00055 * 8 7 6
40 40 H 1.09003 * 109.46960 * 60.00201 * 9 8 7
41 41 H 1.08999 * 109.46885 * 300.00321 * 9 8 7
42 42 H 0.97005 * 119.99791 * 0.02562 * 12 10 9
43 43 H 1.08998 * 109.45866 * 324.97703 * 13 12 10
44 44 H 1.09002 * 109.39343 * 61.36176 * 14 13 12
45 45 H 1.09003 * 109.62467 * 301.25403 * 14 13 12
46 46 H 1.09000 * 109.58250 * 185.72113 * 15 14 13
47 47 H 1.08995 * 109.58477 * 65.43833 * 15 14 13
48 48 H 0.96995 * 120.00379 * 180.02562 * 20 19 17
49 49 H 1.08996 * 109.59017 * 66.18099 * 25 16 15
50 50 H 1.09009 * 109.58200 * 186.46074 * 25 16 15
51 51 H 1.09002 * 109.49555 * 58.67538 * 26 13 12
52 52 H 1.08992 * 109.52043 * 298.59539 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 6 3.0351 1.3329 1.1816
5 8 3.7501 2.5703 1.1812
6 6 4.6888 2.6994 2.2510
7 6 5.3915 4.0549 2.1519
8 6 6.3970 4.1929 3.2968
9 6 7.1002 5.5481 3.1975
10 6 8.0901 5.6843 4.3255
11 8 8.2207 4.7856 5.1295
12 7 8.8311 6.8042 4.4403
13 6 9.7938 6.9364 5.5366
14 6 11.1146 6.2737 5.1373
15 6 12.1087 6.3867 6.2976
16 7 12.2314 7.7992 6.6830
17 6 13.4598 8.4011 6.7456
18 1 13.5496 9.4638 6.5756
19 6 14.5895 7.6454 7.0273
20 7 14.4642 6.4462 7.5553
21 14 16.2876 8.3302 6.6573
22 1 16.4939 9.5840 7.4257
23 1 17.3184 7.3349 7.0470
24 1 16.4003 8.6158 5.2044
25 6 11.0111 8.5533 7.0006
26 6 10.0303 8.4195 5.8314
27 1 -0.5399 0.9354 -0.0004
28 1 -0.5401 -0.9352 0.0004
29 1 1.8500 -0.9354 0.0004
30 1 1.3587 2.1316 0.0896
31 1 2.6214 1.4024 -0.9314
32 1 3.7400 0.5064 1.0921
33 1 2.4773 1.2354 2.1130
34 1 5.4278 1.9009 2.1842
35 1 4.1650 2.6308 3.2044
36 1 4.6524 4.8531 2.2189
37 1 5.9152 4.1238 1.1985
38 1 7.1362 3.3946 3.2294
39 1 5.8736 4.1238 4.2504
40 1 6.3613 6.3466 3.2647
41 1 7.6236 5.6167 2.2439
42 1 8.7268 7.5228 3.7971
43 1 9.3993 6.4475 6.4273
44 1 11.5211 6.7764 4.2597
45 1 10.9418 5.2223 4.9074
46 1 13.0812 6.0077 5.9836
47 1 11.7470 5.8063 7.1464
48 1 15.2536 5.9182 7.7525
49 1 10.5575 8.1502 7.9060
50 1 11.2599 9.6036 7.1531
51 1 9.0845 8.8936 6.0937
52 1 10.4478 8.9042 4.9490
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000611417054.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:55
Heat of formation + Delta-G solvation = -72.374048 kcal
Electronic energy + Delta-G solvation = -26477.469646 eV
Core-core repulsion = 22670.051205 eV
Total energy + Delta-G solvation = -3807.418441 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-39.74275 -38.59582 -37.40188 -35.79029 -34.72199 -34.31318 -32.16741 -30.71074
-30.01012 -29.55631 -28.67640 -25.29425 -24.11376 -23.35926 -22.24546 -21.98092
-21.22670 -20.26671 -20.07633 -19.20873 -17.06618 -16.90607 -16.78934 -16.50092
-15.97441 -15.72837 -15.50841 -14.85877 -14.71378 -14.43055 -13.93785 -13.81589
-13.55733 -13.48771 -13.22360 -12.97898 -12.79345 -12.56961 -12.38404 -12.14386
-11.91821 -11.75689 -11.54092 -11.49558 -11.42008 -11.19084 -11.10972 -10.92128
-10.84964 -10.71475 -10.38621 -10.25178 -10.05925 -9.95607 -9.85352 -9.78964
-9.74684 -9.41170 -8.68053 -8.40898 -6.67679 -5.77869 -3.21250 1.73914
2.84308 3.17998 3.38604 3.44793 3.45572 3.50785 4.43527 4.49920
4.57029 4.62206 4.65471 4.72067 4.79274 4.94253 5.00813 5.02688
5.09774 5.11967 5.30724 5.34516 5.40426 5.44408 5.46467 5.47052
5.52046 5.55127 5.56515 5.65030 5.68298 5.84240 6.00692 6.09215
6.11791 6.13228 6.23945 6.25022 6.38323 6.45054 6.62356 6.65884
6.78297 6.85474 6.92971 6.96427 7.38400 7.68171 7.76631 7.79765
8.45134 8.46881 9.21629 9.84913 10.41839 11.30670
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.036373 B = 0.001468 C = 0.001442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.621589 B =19070.972220 C =19417.426756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.155 4.155
3 C -0.093 4.093
4 C 0.066 3.934
5 O -0.392 6.392
6 C 0.062 3.938
7 C -0.117 4.117
8 C -0.102 4.102
9 C -0.139 4.139
10 C 0.507 3.493
11 O -0.543 6.543
12 N -0.727 5.727
13 C 0.150 3.850
14 C -0.146 4.146
15 C 0.174 3.826
16 N -0.592 5.592
17 C -0.257 4.257
18 H 0.065 0.935
19 C 0.004 3.996
20 N -0.901 5.901
21 Si 0.903 3.097
22 H -0.282 1.282
23 H -0.290 1.290
24 H -0.284 1.284
25 C 0.148 3.852
26 C -0.138 4.138
27 H 0.098 0.902
28 H 0.099 0.901
29 H 0.110 0.890
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.050 0.950
33 H 0.049 0.951
34 H 0.051 0.949
35 H 0.050 0.950
36 H 0.071 0.929
37 H 0.071 0.929
38 H 0.072 0.928
39 H 0.072 0.928
40 H 0.091 0.909
41 H 0.092 0.908
42 H 0.395 0.605
43 H 0.080 0.920
44 H 0.054 0.946
45 H 0.052 0.948
46 H 0.089 0.911
47 H 0.020 0.980
48 H 0.255 0.745
49 H 0.020 0.980
50 H 0.058 0.942
51 H 0.055 0.945
52 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.437 -7.011 -14.737 29.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.225 4.225
2 C -0.173 4.173
3 C -0.131 4.131
4 C -0.010 4.010
5 O -0.312 6.312
6 C -0.014 4.014
7 C -0.155 4.155
8 C -0.140 4.140
9 C -0.179 4.179
10 C 0.293 3.707
11 O -0.420 6.420
12 N -0.377 5.377
13 C 0.046 3.954
14 C -0.186 4.186
15 C 0.047 3.953
16 N -0.315 5.315
17 C -0.386 4.386
18 H 0.083 0.917
19 C -0.195 4.195
20 N -0.545 5.545
21 Si 0.732 3.268
22 H -0.209 1.209
23 H -0.216 1.216
24 H -0.210 1.210
25 C 0.021 3.979
26 C -0.178 4.178
27 H 0.116 0.884
28 H 0.117 0.883
29 H 0.128 0.872
30 H 0.093 0.907
31 H 0.099 0.901
32 H 0.068 0.932
33 H 0.068 0.932
34 H 0.069 0.931
35 H 0.068 0.932
36 H 0.089 0.911
37 H 0.090 0.910
38 H 0.091 0.909
39 H 0.090 0.910
40 H 0.109 0.891
41 H 0.110 0.890
42 H 0.228 0.772
43 H 0.098 0.902
44 H 0.072 0.928
45 H 0.071 0.929
46 H 0.107 0.893
47 H 0.038 0.962
48 H 0.065 0.935
49 H 0.037 0.963
50 H 0.076 0.924
51 H 0.073 0.927
52 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -24.212 -7.627 -14.208 29.091
hybrid contribution 0.900 0.383 -0.326 1.032
sum -23.312 -7.244 -14.534 28.411
Atomic orbital electron populations
1.23916 0.95890 1.02099 1.00559 1.22819 0.96046 0.98066 1.00394
1.20657 0.97939 0.95866 0.98601 1.22404 0.93937 0.86482 0.98217
1.87838 1.55298 1.37533 1.50499 1.22527 0.91161 0.98158 0.89568
1.21531 0.98194 0.96175 0.99604 1.21226 0.97826 0.96513 0.98405
1.21650 0.98246 0.99809 0.98244 1.20643 0.81395 0.82244 0.86417
1.90711 1.68146 1.39534 1.43587 1.46364 1.40860 1.19058 1.31393
1.21031 0.88511 0.96754 0.89063 1.22559 0.95636 0.99020 1.01404
1.20747 0.97583 0.85068 0.91865 1.44085 1.01333 1.08098 1.77987
1.19138 0.83687 0.93522 1.42274 0.91691 1.25059 0.98373 0.97307
0.98760 1.70026 1.28564 1.11810 1.44146 0.86371 0.84050 0.78049
0.78284 1.20860 1.21621 1.21047 1.20839 0.87634 0.96429 0.92988
1.22323 0.99609 0.94329 1.01565 0.88410 0.88268 0.87152 0.90661
0.90094 0.93217 0.93248 0.93121 0.93181 0.91077 0.91030 0.90894
0.90970 0.89071 0.88974 0.77230 0.90173 0.92762 0.92891 0.89331
0.96186 0.93519 0.96253 0.92364 0.92681 0.91888
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -0.95 14.32 29.01 0.42 -0.53 16
2 C -0.16 -0.85 9.52 -36.03 -0.34 -1.20 16
3 C -0.09 -0.59 6.03 -27.88 -0.17 -0.76 16
4 C 0.07 0.48 5.92 37.16 0.22 0.70 16
5 O -0.39 -3.69 10.34 -35.23 -0.36 -4.06 16
6 C 0.06 0.52 5.94 37.16 0.22 0.74 16
7 C -0.12 -0.94 5.58 -26.73 -0.15 -1.09 16
8 C -0.10 -0.97 4.50 -26.73 -0.12 -1.09 16
9 C -0.14 -1.30 5.70 -27.89 -0.16 -1.46 16
10 C 0.51 7.16 7.79 -10.99 -0.09 7.07 16
11 O -0.54 -10.08 15.65 5.55 0.09 -10.00 16
12 N -0.73 -9.94 5.08 -53.75 -0.27 -10.21 16
13 C 0.15 2.61 2.41 -67.87 -0.16 2.45 16
14 C -0.15 -2.93 5.66 -26.59 -0.15 -3.08 16
15 C 0.17 4.27 5.30 -3.71 -0.02 4.25 16
16 N -0.59 -14.87 3.00 -172.31 -0.52 -15.39 16
17 C -0.26 -7.04 9.58 -15.06 -0.14 -7.18 16
18 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16
19 C 0.00 0.11 4.92 -17.43 -0.09 0.02 16
20 N -0.90 -26.44 11.20 55.49 0.62 -25.82 16
21 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16
22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16
23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16
24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
25 C 0.15 3.06 6.52 -3.71 -0.02 3.04 16
26 C -0.14 -2.29 5.55 -26.61 -0.15 -2.44 16
27 H 0.10 0.45 7.84 -52.49 -0.41 0.04 16
28 H 0.10 0.40 8.06 -52.49 -0.42 -0.03 16
29 H 0.11 0.51 8.06 -52.48 -0.42 0.09 16
30 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16
31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.07 0.79 8.10 -51.93 -0.42 0.36 16
39 H 0.07 0.75 8.10 -51.93 -0.42 0.33 16
40 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16
41 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16
42 H 0.39 4.15 8.60 -40.82 -0.35 3.80 16
43 H 0.08 1.59 7.58 -51.93 -0.39 1.19 16
44 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16
45 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16
46 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16
47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16
48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16
49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16
50 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16
51 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16
52 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16
LS Contribution 417.85 15.07 6.30 6.30
Total: -1.00 -32.41 417.85 -9.95 -42.35
By element:
Atomic # 1 Polarization: 10.61 SS G_CDS: -9.86 Total: 0.75 kcal
Atomic # 6 Polarization: 0.34 SS G_CDS: -0.90 Total: -0.57 kcal
Atomic # 7 Polarization: -51.25 SS G_CDS: -0.17 Total: -51.42 kcal
Atomic # 8 Polarization: -13.78 SS G_CDS: -0.28 Total: -14.05 kcal
Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal
Total LS contribution 6.30 Total: 6.30 kcal
Total: -32.41 -9.95 -42.35 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611417054.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -30.021 kcal
(2) G-P(sol) polarization free energy of solvation -32.406 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.427 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal
(6) G-S(sol) free energy of system = (1) + (5) -72.374 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds