Wall clock time and date at job start Tue Mar 31 2020 14:22:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.31004 * 1
3 3 C 1.50695 * 120.00225 * 2 1
4 4 C 1.53001 * 109.47071 * 125.00080 * 3 2 1
5 5 O 1.42904 * 109.46908 * 179.97438 * 4 3 2
6 6 C 1.42906 * 113.99741 * 179.97438 * 5 4 3
7 7 C 1.53000 * 109.46804 * 180.02562 * 6 5 4
8 8 C 1.53000 * 109.47098 * 180.02562 * 7 6 5
9 9 C 1.52994 * 109.47480 * 179.97438 * 8 7 6
10 10 C 1.50696 * 109.47424 * 179.97438 * 9 8 7
11 11 O 1.21287 * 119.99701 * 0.02562 * 10 9 8
12 12 N 1.34774 * 120.00326 * 179.97438 * 10 9 8
13 13 C 1.46498 * 120.00360 * 180.02562 * 12 10 9
14 14 C 1.53071 * 109.44009 * 84.79625 * 13 12 10
15 15 C 1.53201 * 109.29371 * 181.23934 * 14 13 12
16 16 N 1.46928 * 108.89275 * 305.57634 * 15 14 13
17 17 C 1.36934 * 120.63265 * 233.51651 * 16 15 14
18 18 H 1.07997 * 119.99862 * 151.82898 * 17 16 15
19 19 C 1.38806 * 120.00015 * 331.83027 * 17 16 15
20 20 N 1.31624 * 120.00191 * 343.08772 * 19 17 16
21 21 Si 1.86800 * 120.00146 * 163.08448 * 19 17 16
22 22 H 1.48503 * 109.47142 * 60.00161 * 21 19 17
23 23 H 1.48498 * 109.47084 * 180.02562 * 21 19 17
24 24 H 1.48500 * 109.47267 * 300.00095 * 21 19 17
25 25 C 1.46932 * 118.73342 * 53.53882 * 16 15 14
26 26 C 1.53045 * 109.46092 * 205.00269 * 13 12 10
27 27 H 1.07999 * 119.99418 * 0.02562 * 1 2 3
28 28 H 1.07998 * 120.00530 * 180.02562 * 1 2 3
29 29 H 1.08007 * 119.99635 * 179.97438 * 2 1 3
30 30 H 1.08998 * 109.47404 * 5.00062 * 3 2 1
31 31 H 1.09002 * 109.46708 * 244.99810 * 3 2 1
32 32 H 1.08998 * 109.47021 * 59.99748 * 4 3 2
33 33 H 1.08996 * 109.46941 * 300.00146 * 4 3 2
34 34 H 1.09003 * 109.46861 * 60.00360 * 6 5 4
35 35 H 1.08999 * 109.47191 * 300.00419 * 6 5 4
36 36 H 1.08994 * 109.47550 * 60.00138 * 7 6 5
37 37 H 1.08999 * 109.46811 * 300.00221 * 7 6 5
38 38 H 1.09003 * 109.46860 * 59.99816 * 8 7 6
39 39 H 1.08999 * 109.46898 * 300.00055 * 8 7 6
40 40 H 1.09003 * 109.46960 * 60.00201 * 9 8 7
41 41 H 1.08999 * 109.46885 * 300.00321 * 9 8 7
42 42 H 0.97005 * 119.99791 * 0.02562 * 12 10 9
43 43 H 1.08998 * 109.45866 * 324.97703 * 13 12 10
44 44 H 1.09002 * 109.39343 * 61.36176 * 14 13 12
45 45 H 1.09003 * 109.62467 * 301.25403 * 14 13 12
46 46 H 1.09000 * 109.58250 * 185.72113 * 15 14 13
47 47 H 1.08995 * 109.58477 * 65.43833 * 15 14 13
48 48 H 0.96995 * 120.00379 * 180.02562 * 20 19 17
49 49 H 1.08996 * 109.59017 * 66.18099 * 25 16 15
50 50 H 1.09009 * 109.58200 * 186.46074 * 25 16 15
51 51 H 1.09002 * 109.49555 * 58.67538 * 26 13 12
52 52 H 1.08992 * 109.52043 * 298.59539 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0636 1.3050 0.0000
4 6 3.0351 1.3329 1.1816
5 8 3.7501 2.5703 1.1812
6 6 4.6888 2.6994 2.2510
7 6 5.3915 4.0549 2.1519
8 6 6.3970 4.1929 3.2968
9 6 7.1002 5.5481 3.1975
10 6 8.0901 5.6843 4.3255
11 8 8.2207 4.7856 5.1295
12 7 8.8311 6.8042 4.4403
13 6 9.7938 6.9364 5.5366
14 6 11.1146 6.2737 5.1373
15 6 12.1087 6.3867 6.2976
16 7 12.2314 7.7992 6.6830
17 6 13.4598 8.4011 6.7456
18 1 13.5496 9.4638 6.5756
19 6 14.5895 7.6454 7.0273
20 7 14.4642 6.4462 7.5553
21 14 16.2876 8.3302 6.6573
22 1 16.4939 9.5840 7.4257
23 1 17.3184 7.3349 7.0470
24 1 16.4003 8.6158 5.2044
25 6 11.0111 8.5533 7.0006
26 6 10.0303 8.4195 5.8314
27 1 -0.5399 0.9354 -0.0004
28 1 -0.5401 -0.9352 0.0004
29 1 1.8500 -0.9354 0.0004
30 1 1.3587 2.1316 0.0896
31 1 2.6214 1.4024 -0.9314
32 1 3.7400 0.5064 1.0921
33 1 2.4773 1.2354 2.1130
34 1 5.4278 1.9009 2.1842
35 1 4.1650 2.6308 3.2044
36 1 4.6524 4.8531 2.2189
37 1 5.9152 4.1238 1.1985
38 1 7.1362 3.3946 3.2294
39 1 5.8736 4.1238 4.2504
40 1 6.3613 6.3466 3.2647
41 1 7.6236 5.6167 2.2439
42 1 8.7268 7.5228 3.7971
43 1 9.3993 6.4475 6.4273
44 1 11.5211 6.7764 4.2597
45 1 10.9418 5.2223 4.9074
46 1 13.0812 6.0077 5.9836
47 1 11.7470 5.8063 7.1464
48 1 15.2536 5.9182 7.7525
49 1 10.5575 8.1502 7.9060
50 1 11.2599 9.6036 7.1531
51 1 9.0845 8.8936 6.0937
52 1 10.4478 8.9042 4.9490
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000611417054.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:22:54
Heat of formation + Delta-G solvation = -92.001359 kcal
Electronic energy + Delta-G solvation = -26478.320750 eV
Core-core repulsion = 22670.051205 eV
Total energy + Delta-G solvation = -3808.269545 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.96755 -39.27142 -38.95397 -36.39870 -35.97387 -35.30375 -33.91461 -31.94808
-31.49698 -30.81639 -29.47603 -26.99490 -25.19227 -23.93242 -23.90905 -23.45845
-22.06987 -21.33039 -20.78163 -20.66300 -18.83527 -17.81009 -17.52679 -17.45200
-17.12853 -16.68856 -16.64778 -16.11972 -15.74371 -15.42809 -15.36756 -15.21785
-14.88570 -14.61795 -14.49304 -14.19328 -14.07962 -13.71756 -13.38211 -13.19614
-13.01012 -12.86606 -12.63036 -12.62307 -12.56290 -12.38919 -12.12690 -12.08132
-12.04464 -11.99491 -11.86268 -11.81334 -11.55853 -11.52107 -11.38750 -10.75481
-10.57800 -10.57552 -10.27388 -9.95366 -8.72016 -7.88065 -5.34945 1.33763
1.47471 1.50224 1.57039 1.73897 2.24572 2.51436 2.72033 3.27919
3.64657 3.80248 3.89385 3.93155 3.98789 4.03183 4.08815 4.15421
4.26075 4.33644 4.35235 4.38865 4.42324 4.46841 4.49681 4.50171
4.66107 4.76948 4.79023 4.80239 4.83984 4.90886 4.91620 4.97976
5.04862 5.06879 5.08390 5.11150 5.13206 5.30926 5.31371 5.41442
5.45416 5.61234 5.63456 5.68607 5.72527 5.83908 6.24239 6.37697
6.68741 7.12601 7.39012 7.83571 8.36496 9.18872
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.036373 B = 0.001468 C = 0.001442
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 769.621589 B =19070.972220 C =19417.426756
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C -0.165 4.165
3 C -0.090 4.090
4 C 0.062 3.938
5 O -0.407 6.407
6 C 0.058 3.942
7 C -0.107 4.107
8 C -0.098 4.098
9 C -0.128 4.128
10 C 0.502 3.498
11 O -0.594 6.594
12 N -0.713 5.713
13 C 0.160 3.840
14 C -0.130 4.130
15 C 0.183 3.817
16 N -0.609 5.609
17 C -0.266 4.266
18 H 0.074 0.926
19 C -0.052 4.052
20 N -0.939 5.939
21 Si 0.970 3.030
22 H -0.272 1.272
23 H -0.297 1.297
24 H -0.276 1.276
25 C 0.140 3.860
26 C -0.121 4.121
27 H 0.100 0.900
28 H 0.110 0.890
29 H 0.118 0.882
30 H 0.072 0.928
31 H 0.079 0.921
32 H 0.055 0.945
33 H 0.052 0.948
34 H 0.050 0.950
35 H 0.051 0.949
36 H 0.080 0.920
37 H 0.077 0.923
38 H 0.054 0.946
39 H 0.058 0.942
40 H 0.123 0.877
41 H 0.118 0.882
42 H 0.416 0.584
43 H 0.053 0.947
44 H 0.061 0.939
45 H 0.044 0.956
46 H 0.054 0.946
47 H -0.013 1.013
48 H 0.249 0.751
49 H 0.009 0.991
50 H 0.067 0.933
51 H 0.091 0.909
52 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.063 -5.231 -16.897 31.498
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C -0.183 4.183
3 C -0.127 4.127
4 C -0.014 4.014
5 O -0.328 6.328
6 C -0.018 4.018
7 C -0.145 4.145
8 C -0.136 4.136
9 C -0.167 4.167
10 C 0.291 3.709
11 O -0.474 6.474
12 N -0.364 5.364
13 C 0.055 3.945
14 C -0.170 4.170
15 C 0.056 3.944
16 N -0.333 5.333
17 C -0.396 4.396
18 H 0.092 0.908
19 C -0.248 4.248
20 N -0.585 5.585
21 Si 0.798 3.202
22 H -0.198 1.198
23 H -0.224 1.224
24 H -0.202 1.202
25 C 0.014 3.986
26 C -0.160 4.160
27 H 0.118 0.882
28 H 0.128 0.872
29 H 0.136 0.864
30 H 0.091 0.909
31 H 0.097 0.903
32 H 0.073 0.927
33 H 0.070 0.930
34 H 0.068 0.932
35 H 0.069 0.931
36 H 0.099 0.901
37 H 0.096 0.904
38 H 0.073 0.927
39 H 0.077 0.923
40 H 0.141 0.859
41 H 0.136 0.864
42 H 0.253 0.747
43 H 0.071 0.929
44 H 0.080 0.920
45 H 0.063 0.937
46 H 0.072 0.928
47 H 0.005 0.995
48 H 0.058 0.942
49 H 0.027 0.973
50 H 0.086 0.914
51 H 0.110 0.890
52 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -25.883 -5.795 -16.409 31.189
hybrid contribution 1.338 -0.198 0.397 1.410
sum -24.544 -5.993 -16.012 29.912
Atomic orbital electron populations
1.24083 0.95861 1.02792 0.99681 1.22867 0.96293 0.97962 1.01168
1.20627 0.97696 0.96303 0.98100 1.22531 0.94141 0.85977 0.98771
1.87807 1.55590 1.38540 1.50818 1.22580 0.91177 0.98552 0.89515
1.21421 0.97867 0.96182 0.99004 1.21157 0.97663 0.96336 0.98476
1.21677 0.97653 1.00473 0.96913 1.21552 0.81453 0.81173 0.86772
1.90704 1.69672 1.41281 1.45764 1.46093 1.39695 1.19918 1.30743
1.20620 0.87637 0.96898 0.89352 1.22301 0.96182 0.99053 0.99464
1.20454 0.96865 0.84864 0.92210 1.44333 1.02286 1.08204 1.78453
1.19562 0.84819 0.94033 1.41177 0.90823 1.25878 1.02111 0.97701
0.99066 1.70207 1.29077 1.13327 1.45890 0.85305 0.79261 0.77335
0.78335 1.19791 1.22353 1.20174 1.21053 0.86842 0.96165 0.94495
1.22118 1.00076 0.93697 1.00116 0.88195 0.87182 0.86425 0.90949
0.90296 0.92696 0.93018 0.93189 0.93067 0.90127 0.90394 0.92691
0.92295 0.85893 0.86417 0.74717 0.92897 0.92011 0.93745 0.92770
0.99535 0.94169 0.97264 0.91419 0.89025 0.90578
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -1.66 14.32 67.78 0.97 -0.69 16
2 C -0.16 -1.65 9.52 25.64 0.24 -1.40 16
3 C -0.09 -1.07 6.03 29.85 0.18 -0.89 16
4 C 0.06 0.86 5.92 71.98 0.43 1.28 16
5 O -0.41 -7.23 10.34 -148.98 -1.54 -8.77 16
6 C 0.06 0.92 5.94 71.98 0.43 1.34 16
7 C -0.11 -1.49 5.58 30.59 0.17 -1.32 16
8 C -0.10 -1.73 4.50 30.59 0.14 -1.59 16
9 C -0.13 -1.98 5.70 29.84 0.17 -1.81 16
10 C 0.50 13.28 7.79 87.66 0.68 13.96 16
11 O -0.59 -22.17 15.65 -3.05 -0.05 -22.22 16
12 N -0.71 -17.59 5.08 -442.36 -2.25 -19.84 16
13 C 0.16 5.39 2.41 45.03 0.11 5.50 16
14 C -0.13 -5.25 5.66 30.69 0.17 -5.07 16
15 C 0.18 9.34 5.30 86.37 0.46 9.80 16
16 N -0.61 -30.92 3.00 -699.07 -2.09 -33.02 16
17 C -0.27 -14.63 9.58 84.03 0.81 -13.82 16
18 H 0.07 3.85 7.88 -2.91 -0.02 3.83 16
19 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16
20 N -0.94 -57.15 11.20 21.65 0.24 -56.91 16
21 Si 0.97 44.97 29.59 68.60 2.03 47.00 16
22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16
23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16
24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16
25 C 0.14 5.67 6.52 86.36 0.56 6.23 16
26 C -0.12 -3.67 5.55 30.67 0.17 -3.50 16
27 H 0.10 0.82 7.84 -2.91 -0.02 0.79 16
28 H 0.11 0.71 8.06 -2.91 -0.02 0.69 16
29 H 0.12 0.97 8.06 -2.91 -0.02 0.95 16
30 H 0.07 0.88 7.79 -2.39 -0.02 0.86 16
31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16
32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16
33 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16
36 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16
37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16
38 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16
39 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16
40 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16
41 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16
42 H 0.42 6.94 8.60 -92.70 -0.80 6.14 16
43 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16
44 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16
45 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16
46 H 0.05 3.12 6.06 -2.39 -0.01 3.10 16
47 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16
48 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16
49 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16
50 H 0.07 2.58 7.93 -2.38 -0.02 2.56 16
51 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16
52 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16
Total: -1.00 -73.36 417.85 2.51 -70.85
By element:
Atomic # 1 Polarization: 17.35 SS G_CDS: 0.06 Total: 17.41 kcal
Atomic # 6 Polarization: -0.62 SS G_CDS: 6.11 Total: 5.49 kcal
Atomic # 7 Polarization: -105.67 SS G_CDS: -4.10 Total: -109.76 kcal
Atomic # 8 Polarization: -29.40 SS G_CDS: -1.59 Total: -30.99 kcal
Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal
Total: -73.36 2.51 -70.85 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000611417054.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.148 kcal
(2) G-P(sol) polarization free energy of solvation -73.362 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.510 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.854 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds