Wall clock time and date at job start Tue Mar 31 2020 13:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47063 * 120.00298 * 2 1 3 5 5 N 1.46505 * 109.47065 * 173.25590 * 4 2 1 6 6 C 1.46506 * 119.99640 * 276.05878 * 5 4 2 7 7 C 1.50697 * 109.46999 * 269.99979 * 6 5 4 8 8 H 1.07999 * 120.00272 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99941 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00217 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46828 * 89.99907 * 11 9 7 13 13 H 1.48500 * 109.47312 * 210.00165 * 11 9 7 14 14 H 1.48495 * 109.47144 * 330.00126 * 11 9 7 15 15 C 1.34763 * 120.00200 * 96.05612 * 5 4 2 16 16 O 1.21284 * 120.00178 * 185.08081 * 15 5 4 17 17 C 1.50703 * 120.00355 * 5.08490 * 15 5 4 18 18 H 1.09006 * 110.85368 * 317.73737 * 17 15 5 19 19 C 1.54626 * 110.97062 * 81.56646 * 17 15 5 20 20 C 1.51284 * 104.25631 * 142.70297 * 19 17 15 21 21 O 1.21285 * 124.94674 * 164.00624 * 20 19 17 22 22 N 1.34421 * 110.11292 * 344.14939 * 20 19 17 23 23 C 1.46503 * 124.34791 * 179.43839 * 22 20 19 24 24 C 1.53002 * 109.46865 * 269.69588 * 23 22 20 25 25 C 1.53001 * 109.47087 * 295.00286 * 24 23 22 26 26 C 1.53002 * 109.46914 * 175.00522 * 24 23 22 27 27 C 1.46761 * 111.29885 * 359.16736 * 22 20 19 28 28 H 1.09000 * 109.46870 * 299.99664 * 1 2 3 29 29 H 1.09003 * 109.47378 * 59.99632 * 1 2 3 30 30 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46807 * 239.99907 * 2 1 3 32 32 H 1.09000 * 109.47118 * 174.46252 * 3 2 1 33 33 H 1.09003 * 109.47065 * 294.45913 * 3 2 1 34 34 H 1.08997 * 109.47586 * 54.46283 * 3 2 1 35 35 H 1.09003 * 109.47407 * 53.25399 * 4 2 1 36 36 H 1.08997 * 109.47094 * 293.25315 * 4 2 1 37 37 H 1.08997 * 109.47199 * 29.99732 * 6 5 4 38 38 H 1.08997 * 109.46978 * 150.00121 * 6 5 4 39 39 H 0.96997 * 120.00252 * 180.02562 * 10 9 7 40 40 H 1.09001 * 110.48910 * 261.59935 * 19 17 15 41 41 H 1.08998 * 110.48415 * 24.11396 * 19 17 15 42 42 H 1.09007 * 109.47033 * 149.70103 * 23 22 20 43 43 H 1.08991 * 109.47318 * 29.69649 * 23 22 20 44 44 H 1.09000 * 109.47001 * 55.00248 * 24 23 22 45 45 H 1.09000 * 109.47169 * 299.99859 * 25 24 23 46 46 H 1.08996 * 109.47381 * 59.99949 * 25 24 23 47 47 H 1.08996 * 109.47125 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47143 * 180.02562 * 26 24 23 49 49 H 1.09004 * 109.46620 * 299.99916 * 26 24 23 50 50 H 1.08997 * 109.47767 * 59.99606 * 26 24 23 51 51 H 1.09002 * 110.24297 * 136.28362 * 27 22 20 52 52 H 1.08994 * 110.24573 * 258.28180 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4960 -0.8634 1.1708 6 6 4.0840 -1.9818 0.4294 7 6 4.2721 -3.1552 1.3560 8 1 3.9830 -3.0758 2.3936 9 6 4.8142 -4.3300 0.8795 10 7 5.1676 -4.4264 -0.3835 11 14 5.0479 -5.7843 2.0283 12 1 3.8277 -6.6305 2.0102 13 1 6.2138 -6.5872 1.5796 14 1 5.2880 -5.2914 3.4083 15 6 4.2945 0.0347 1.7807 16 8 5.4975 -0.0291 1.6399 17 6 3.6928 1.1184 2.6379 18 1 2.8059 1.5399 2.1647 19 6 3.3666 0.5875 4.0530 20 6 3.6955 1.7448 4.9701 21 8 3.3291 1.8444 6.1220 22 7 4.4506 2.6483 4.3216 23 6 4.9363 3.8972 4.9138 24 6 3.9157 5.0098 4.6661 25 6 3.8161 5.2856 3.1645 26 6 4.3623 6.2818 5.3897 27 6 4.7310 2.2199 2.9462 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1255 1.4441 0.0992 33 1 1.7600 1.9269 -0.9355 34 1 1.5980 1.9842 0.8362 35 1 1.5815 -1.7082 1.3116 36 1 1.7786 -0.1426 2.1351 37 1 3.4196 -2.2661 -0.3866 38 1 5.0498 -1.6809 0.0235 39 1 5.5486 -5.2529 -0.7189 40 1 2.3112 0.3255 4.1284 41 1 3.9905 -0.2741 4.2904 42 1 5.8883 4.1694 4.4577 43 1 5.0729 3.7617 5.9866 44 1 2.9414 4.6998 5.0440 45 1 4.7904 5.5957 2.7866 46 1 3.4981 4.3795 2.6489 47 1 3.0894 6.0785 2.9881 48 1 3.6349 7.0743 5.2137 49 1 4.4332 6.0853 6.4596 50 1 5.3365 6.5918 5.0120 51 1 4.6089 3.0565 2.2583 52 1 5.7411 1.8166 2.8754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745382461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:28 Heat of formation + Delta-G solvation = -89.354640 kcal Electronic energy + Delta-G solvation = -29637.978125 eV Core-core repulsion = 25829.823350 eV Total energy + Delta-G solvation = -3808.154775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85482 -39.09909 -36.82836 -36.44897 -35.50652 -33.73711 -32.43051 -31.82438 -28.10646 -27.82292 -27.23353 -26.97780 -26.39413 -25.57204 -23.59425 -21.73520 -20.83498 -20.29424 -19.30829 -18.28870 -17.34653 -16.81529 -16.45370 -15.90022 -15.63312 -15.10599 -14.94861 -14.65370 -14.47153 -14.20070 -14.15661 -13.62439 -13.59073 -13.30098 -13.03706 -12.97144 -12.80586 -12.51446 -12.38678 -12.25810 -12.16875 -11.99707 -11.76607 -11.53572 -11.36887 -11.34986 -11.13404 -11.01900 -10.99043 -10.95921 -10.90754 -10.79151 -10.58317 -10.41222 -10.16708 -9.84716 -9.65178 -9.02826 -8.66326 -8.47162 -7.73045 -6.08450 -4.13506 2.60584 2.92700 3.19795 3.28106 3.35329 3.39746 3.75889 4.32466 4.41707 4.50906 4.62165 4.66861 4.80923 4.83666 4.96455 5.02325 5.06024 5.16891 5.23833 5.25958 5.33607 5.35702 5.37946 5.44819 5.49840 5.55851 5.60631 5.65179 5.69225 5.71151 5.77730 5.85193 5.85717 5.87099 6.00409 6.01212 6.06327 6.07805 6.12148 6.22087 6.37901 6.49052 6.52102 6.99553 7.08322 7.39276 7.46958 7.87661 8.18112 8.18424 8.31972 8.82165 8.98068 9.52047 10.99520 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003713 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.018713 B = 7538.520042 C = 8588.340964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.150 4.150 4 C 0.112 3.888 5 N -0.589 5.589 6 C 0.247 3.753 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.063 3.937 10 N -0.894 5.894 11 Si 0.896 3.104 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.520 3.480 16 O -0.538 6.538 17 C -0.134 4.134 18 H 0.113 0.887 19 C -0.141 4.141 20 C 0.523 3.477 21 O -0.537 6.537 22 N -0.615 5.615 23 C 0.130 3.870 24 C -0.114 4.114 25 C -0.151 4.151 26 C -0.144 4.144 27 C 0.110 3.890 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.263 0.737 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.055 0.945 46 H 0.060 0.940 47 H 0.054 0.946 48 H 0.057 0.943 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.083 0.917 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.012 18.374 3.993 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.137 4.137 3 C -0.207 4.207 4 C -0.013 4.013 5 N -0.319 5.319 6 C 0.128 3.872 7 C -0.567 4.567 8 H 0.076 0.924 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.305 3.695 16 O -0.415 6.415 17 C -0.156 4.156 18 H 0.131 0.869 19 C -0.182 4.182 20 C 0.311 3.689 21 O -0.414 6.414 22 N -0.349 5.349 23 C 0.008 3.992 24 C -0.134 4.134 25 C -0.208 4.208 26 C -0.202 4.202 27 C -0.012 4.012 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.076 0.924 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -6.434 18.298 4.399 19.889 hybrid contribution 0.061 -0.952 0.418 1.041 sum -6.373 17.346 4.817 19.098 Atomic orbital electron populations 1.21764 0.94917 1.01957 1.01420 1.21563 0.95528 0.96430 1.00171 1.21970 1.01413 0.96100 1.01195 1.21613 0.81717 1.01288 0.96644 1.48150 1.05237 1.26899 1.51583 1.19290 0.94795 0.81916 0.91233 1.21422 1.41928 0.97005 0.96387 0.92425 1.24918 0.95146 0.98715 0.95188 1.69925 1.42417 1.27176 1.13713 0.86520 0.77727 0.82238 0.81100 1.20619 1.21102 1.19856 1.19709 0.86989 0.82289 0.80481 1.90675 1.14475 1.73952 1.62440 1.22523 1.00572 0.96385 0.96149 0.86892 1.22295 1.04976 0.98428 0.92465 1.20825 0.77263 0.83822 0.86994 1.90701 1.55161 1.78517 1.16999 1.48263 1.52193 1.20384 1.14027 1.21462 0.96606 0.81957 0.99148 1.21543 1.00035 0.95276 0.96529 1.21955 1.01797 1.01717 0.95311 1.21767 1.01384 0.96754 1.00310 1.22174 1.00420 0.96583 0.82063 0.92868 0.92786 0.92354 0.90261 0.92390 0.92780 0.92924 0.89911 0.91415 0.94922 0.93723 0.92689 0.87520 0.86998 0.90252 0.90034 0.90821 0.92567 0.92110 0.92732 0.92427 0.92499 0.92497 0.89853 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 2 C -0.12 -1.48 3.11 -90.62 -0.28 -1.76 16 3 C -0.15 -1.68 7.73 37.16 0.29 -1.39 16 4 C 0.11 1.65 4.86 -4.04 -0.02 1.63 16 5 N -0.59 -11.30 2.27 -175.06 -0.40 -11.70 16 6 C 0.25 6.07 5.22 -5.19 -0.03 6.05 16 7 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 10 N -0.89 -25.90 13.29 55.43 0.74 -25.16 16 11 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 15 C 0.52 9.69 5.51 -10.99 -0.06 9.63 16 16 O -0.54 -12.31 15.08 5.55 0.08 -12.23 16 17 C -0.13 -1.83 2.06 -90.14 -0.19 -2.01 16 18 H 0.11 1.29 4.14 -51.93 -0.21 1.07 16 19 C -0.14 -1.97 6.04 -26.74 -0.16 -2.13 16 20 C 0.52 7.77 8.02 -10.86 -0.09 7.68 16 21 O -0.54 -9.60 17.59 5.55 0.10 -9.50 16 22 N -0.62 -7.68 2.71 -172.42 -0.47 -8.15 16 23 C 0.13 1.34 5.36 -4.04 -0.02 1.32 16 24 C -0.11 -1.02 3.13 -90.62 -0.28 -1.30 16 25 C -0.15 -1.22 8.58 37.16 0.32 -0.90 16 26 C -0.14 -1.05 9.19 37.16 0.34 -0.70 16 27 C 0.11 1.38 6.24 -3.13 -0.02 1.36 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.16 8.06 -51.93 -0.42 0.75 16 32 H 0.06 0.75 6.00 -51.93 -0.31 0.44 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.50 7.00 -51.93 -0.36 0.14 16 35 H 0.08 1.30 8.11 -51.93 -0.42 0.88 16 36 H 0.07 0.84 5.20 -51.93 -0.27 0.57 16 37 H 0.03 0.82 7.99 -51.93 -0.41 0.41 16 38 H 0.04 1.25 7.36 -51.93 -0.38 0.87 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.11 1.29 7.43 -51.93 -0.39 0.91 16 41 H 0.11 1.76 7.89 -51.93 -0.41 1.35 16 42 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 43 H 0.08 0.91 7.92 -51.93 -0.41 0.50 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.53 5.65 -51.93 -0.29 0.24 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 50 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 51 H 0.08 0.87 5.89 -51.93 -0.31 0.56 16 52 H 0.09 1.39 6.85 -51.93 -0.36 1.04 16 LS Contribution 402.02 15.07 6.06 6.06 Total: -1.00 -32.58 402.02 -8.34 -40.92 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.15 Total: 0.01 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.28 Total: 3.31 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.13 Total: -45.01 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: 0.18 Total: -21.73 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.58 -8.34 -40.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.436 kcal (2) G-P(sol) polarization free energy of solvation -32.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds