Wall clock time and date at job start Tue Mar 31 2020 13:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47135 * 2 1 4 4 C 1.52999 * 109.47063 * 120.00298 * 2 1 3 5 5 N 1.46505 * 109.47065 * 173.25590 * 4 2 1 6 6 C 1.46506 * 119.99640 * 276.05878 * 5 4 2 7 7 C 1.50697 * 109.46999 * 269.99979 * 6 5 4 8 8 H 1.07999 * 120.00272 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00102 * 180.02562 * 7 6 5 10 10 N 1.31514 * 119.99941 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00217 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.46828 * 89.99907 * 11 9 7 13 13 H 1.48500 * 109.47312 * 210.00165 * 11 9 7 14 14 H 1.48495 * 109.47144 * 330.00126 * 11 9 7 15 15 C 1.34763 * 120.00200 * 96.05612 * 5 4 2 16 16 O 1.21284 * 120.00178 * 185.08081 * 15 5 4 17 17 C 1.50703 * 120.00355 * 5.08490 * 15 5 4 18 18 H 1.09006 * 110.85368 * 317.73737 * 17 15 5 19 19 C 1.54626 * 110.97062 * 81.56646 * 17 15 5 20 20 C 1.51284 * 104.25631 * 142.70297 * 19 17 15 21 21 O 1.21285 * 124.94674 * 164.00624 * 20 19 17 22 22 N 1.34421 * 110.11292 * 344.14939 * 20 19 17 23 23 C 1.46503 * 124.34791 * 179.43839 * 22 20 19 24 24 C 1.53002 * 109.46865 * 269.69588 * 23 22 20 25 25 C 1.53001 * 109.47087 * 295.00286 * 24 23 22 26 26 C 1.53002 * 109.46914 * 175.00522 * 24 23 22 27 27 C 1.46761 * 111.29885 * 359.16736 * 22 20 19 28 28 H 1.09000 * 109.46870 * 299.99664 * 1 2 3 29 29 H 1.09003 * 109.47378 * 59.99632 * 1 2 3 30 30 H 1.09001 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46807 * 239.99907 * 2 1 3 32 32 H 1.09000 * 109.47118 * 174.46252 * 3 2 1 33 33 H 1.09003 * 109.47065 * 294.45913 * 3 2 1 34 34 H 1.08997 * 109.47586 * 54.46283 * 3 2 1 35 35 H 1.09003 * 109.47407 * 53.25399 * 4 2 1 36 36 H 1.08997 * 109.47094 * 293.25315 * 4 2 1 37 37 H 1.08997 * 109.47199 * 29.99732 * 6 5 4 38 38 H 1.08997 * 109.46978 * 150.00121 * 6 5 4 39 39 H 0.96997 * 120.00252 * 180.02562 * 10 9 7 40 40 H 1.09001 * 110.48910 * 261.59935 * 19 17 15 41 41 H 1.08998 * 110.48415 * 24.11396 * 19 17 15 42 42 H 1.09007 * 109.47033 * 149.70103 * 23 22 20 43 43 H 1.08991 * 109.47318 * 29.69649 * 23 22 20 44 44 H 1.09000 * 109.47001 * 55.00248 * 24 23 22 45 45 H 1.09000 * 109.47169 * 299.99859 * 25 24 23 46 46 H 1.08996 * 109.47381 * 59.99949 * 25 24 23 47 47 H 1.08996 * 109.47125 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47143 * 180.02562 * 26 24 23 49 49 H 1.09004 * 109.46620 * 299.99916 * 26 24 23 50 50 H 1.08997 * 109.47767 * 59.99606 * 26 24 23 51 51 H 1.09002 * 110.24297 * 136.28362 * 27 22 20 52 52 H 1.08994 * 110.24573 * 258.28180 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4960 -0.8634 1.1708 6 6 4.0840 -1.9818 0.4294 7 6 4.2721 -3.1552 1.3560 8 1 3.9830 -3.0758 2.3936 9 6 4.8142 -4.3300 0.8795 10 7 5.1676 -4.4264 -0.3835 11 14 5.0479 -5.7843 2.0283 12 1 3.8277 -6.6305 2.0102 13 1 6.2138 -6.5872 1.5796 14 1 5.2880 -5.2914 3.4083 15 6 4.2945 0.0347 1.7807 16 8 5.4975 -0.0291 1.6399 17 6 3.6928 1.1184 2.6379 18 1 2.8059 1.5399 2.1647 19 6 3.3666 0.5875 4.0530 20 6 3.6955 1.7448 4.9701 21 8 3.3291 1.8444 6.1220 22 7 4.4506 2.6483 4.3216 23 6 4.9363 3.8972 4.9138 24 6 3.9157 5.0098 4.6661 25 6 3.8161 5.2856 3.1645 26 6 4.3623 6.2818 5.3897 27 6 4.7310 2.2199 2.9462 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1255 1.4441 0.0992 33 1 1.7600 1.9269 -0.9355 34 1 1.5980 1.9842 0.8362 35 1 1.5815 -1.7082 1.3116 36 1 1.7786 -0.1426 2.1351 37 1 3.4196 -2.2661 -0.3866 38 1 5.0498 -1.6809 0.0235 39 1 5.5486 -5.2529 -0.7189 40 1 2.3112 0.3255 4.1284 41 1 3.9905 -0.2741 4.2904 42 1 5.8883 4.1694 4.4577 43 1 5.0729 3.7617 5.9866 44 1 2.9414 4.6998 5.0440 45 1 4.7904 5.5957 2.7866 46 1 3.4981 4.3795 2.6489 47 1 3.0894 6.0785 2.9881 48 1 3.6349 7.0743 5.2137 49 1 4.4332 6.0853 6.4596 50 1 5.3365 6.5918 5.0120 51 1 4.6089 3.0565 2.2583 52 1 5.7411 1.8166 2.8754 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745382461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:27 Heat of formation + Delta-G solvation = -108.095607 kcal Electronic energy + Delta-G solvation = -29638.790794 eV Core-core repulsion = 25829.823350 eV Total energy + Delta-G solvation = -3808.967444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07098 -40.48945 -37.92387 -37.68654 -36.56390 -35.42803 -34.13071 -32.97237 -29.72623 -28.96882 -28.12274 -27.80269 -27.35871 -26.87442 -25.29496 -23.18445 -21.65645 -21.38259 -20.33844 -19.70748 -18.65313 -18.52806 -17.87823 -17.16908 -17.00831 -16.49203 -16.20835 -15.95075 -15.57526 -15.50808 -15.14560 -14.77141 -14.65255 -14.45014 -14.44053 -14.04230 -13.89314 -13.80168 -13.68688 -13.26601 -13.09635 -13.02344 -12.87850 -12.77627 -12.69315 -12.53551 -12.52548 -12.32207 -12.24594 -12.13785 -12.06858 -11.79342 -11.74517 -11.62740 -11.59976 -11.44913 -11.06821 -10.62878 -10.55881 -9.72083 -9.40116 -8.21649 -6.35748 1.36848 1.39212 1.42748 1.49037 1.69710 1.90565 2.27469 2.42368 3.08278 3.16598 3.37707 3.63988 3.80111 3.90172 3.92779 3.96843 4.02872 4.12778 4.16729 4.30219 4.42496 4.43597 4.49441 4.57882 4.63744 4.72022 4.77060 4.80378 4.83897 4.85055 4.89174 4.95495 5.03867 5.05135 5.06875 5.10137 5.10513 5.25876 5.26401 5.33588 5.34207 5.44588 5.44754 5.52662 5.57930 5.60416 5.85861 5.99204 6.07581 6.70569 6.78972 7.04277 7.28126 7.44446 8.85179 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013362 B = 0.003713 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2095.018713 B = 7538.520042 C = 8588.340964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.106 3.894 5 N -0.592 5.592 6 C 0.265 3.735 7 C -0.542 4.542 8 H 0.055 0.945 9 C 0.011 3.989 10 N -0.927 5.927 11 Si 0.962 3.038 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.273 1.273 15 C 0.517 3.483 16 O -0.588 6.588 17 C -0.117 4.117 18 H 0.145 0.855 19 C -0.140 4.140 20 C 0.521 3.479 21 O -0.570 6.570 22 N -0.605 5.605 23 C 0.123 3.877 24 C -0.108 4.108 25 C -0.149 4.149 26 C -0.141 4.141 27 C 0.115 3.885 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.021 0.979 38 H 0.000 1.000 39 H 0.266 0.734 40 H 0.131 0.869 41 H 0.090 0.910 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.055 0.945 47 H 0.063 0.937 48 H 0.065 0.935 49 H 0.052 0.948 50 H 0.067 0.933 51 H 0.114 0.886 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.726 20.193 4.738 22.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.134 4.134 3 C -0.204 4.204 4 C -0.016 4.016 5 N -0.321 5.321 6 C 0.143 3.857 7 C -0.580 4.580 8 H 0.073 0.927 9 C -0.188 4.188 10 N -0.567 5.567 11 Si 0.787 3.213 12 H -0.190 1.190 13 H -0.208 1.208 14 H -0.198 1.198 15 C 0.305 3.695 16 O -0.469 6.469 17 C -0.138 4.138 18 H 0.163 0.837 19 C -0.180 4.180 20 C 0.309 3.691 21 O -0.450 6.450 22 N -0.337 5.337 23 C 0.002 3.998 24 C -0.128 4.128 25 C -0.206 4.206 26 C -0.199 4.199 27 C -0.008 4.008 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.118 0.882 37 H 0.039 0.961 38 H 0.019 0.981 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.109 0.891 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.082 0.918 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.132 0.868 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.180 20.151 5.136 22.346 hybrid contribution 0.632 -1.488 0.151 1.624 sum -7.549 18.663 5.286 20.814 Atomic orbital electron populations 1.21723 0.92414 1.02201 1.03099 1.21510 0.97488 0.96871 0.97527 1.21959 1.00077 0.95216 1.03192 1.21914 0.78657 1.01733 0.99298 1.48087 1.07360 1.25648 1.50978 1.18682 0.92754 0.83113 0.91108 1.21726 1.41802 0.98011 0.96505 0.92702 1.25780 0.94806 1.01589 0.96673 1.70042 1.43177 1.28034 1.15407 0.85499 0.78156 0.78901 0.78779 1.18982 1.20823 1.19821 1.20483 0.86336 0.82702 0.80002 1.90651 1.16847 1.75353 1.64066 1.22419 1.01619 0.94755 0.94995 0.83710 1.22299 1.06069 0.97502 0.92132 1.20882 0.77389 0.84205 0.86584 1.90685 1.56775 1.79235 1.18310 1.48321 1.51032 1.20643 1.13742 1.21708 0.98027 0.81428 0.98617 1.21467 0.98503 0.95262 0.97547 1.21948 1.02650 1.01827 0.94217 1.21745 1.02202 0.96059 0.99892 1.22151 0.98842 0.97167 0.82611 0.90729 0.91535 0.92922 0.93279 0.94529 0.91455 0.90136 0.91104 0.88156 0.96074 0.98149 0.92478 0.85142 0.89146 0.88390 0.91096 0.92587 0.91664 0.92599 0.91769 0.91563 0.92917 0.91396 0.86819 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 71.98 0.66 -1.74 16 2 C -0.11 -2.73 3.11 -10.79 -0.03 -2.76 16 3 C -0.15 -2.91 7.73 71.98 0.56 -2.36 16 4 C 0.11 3.04 4.86 86.38 0.42 3.46 16 5 N -0.59 -23.20 2.27 -826.15 -1.88 -25.07 16 6 C 0.26 13.70 5.22 85.63 0.45 14.15 16 7 C -0.54 -30.35 9.39 25.60 0.24 -30.11 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.61 5.46 84.65 0.46 1.07 16 10 N -0.93 -55.26 13.29 21.45 0.28 -54.98 16 11 Si 0.96 44.52 29.54 68.60 2.03 46.54 16 12 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 13 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 14 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 15 C 0.52 19.51 5.51 87.66 0.48 19.99 16 16 O -0.59 -28.08 15.08 -3.04 -0.05 -28.12 16 17 C -0.12 -2.99 2.06 -10.48 -0.02 -3.01 16 18 H 0.15 2.79 4.14 -2.38 -0.01 2.78 16 19 C -0.14 -3.71 6.04 30.59 0.18 -3.52 16 20 C 0.52 14.91 8.02 87.90 0.71 15.62 16 21 O -0.57 -20.05 17.59 -3.05 -0.05 -20.10 16 22 N -0.61 -14.22 2.71 -817.99 -2.21 -16.44 16 23 C 0.12 2.33 5.36 86.38 0.46 2.80 16 24 C -0.11 -1.69 3.13 -10.79 -0.03 -1.72 16 25 C -0.15 -1.93 8.58 71.98 0.62 -1.31 16 26 C -0.14 -1.72 9.19 71.98 0.66 -1.05 16 27 C 0.12 2.71 6.24 86.83 0.54 3.25 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.46 8.06 -2.38 -0.02 1.44 16 32 H 0.04 0.88 6.00 -2.39 -0.01 0.87 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.15 7.00 -2.39 -0.02 1.13 16 35 H 0.07 2.20 8.11 -2.39 -0.02 2.18 16 36 H 0.10 2.19 5.20 -2.39 -0.01 2.17 16 37 H 0.02 1.13 7.99 -2.39 -0.02 1.11 16 38 H 0.00 0.02 7.36 -2.39 -0.02 0.01 16 39 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 40 H 0.13 2.81 7.43 -2.39 -0.02 2.79 16 41 H 0.09 2.86 7.89 -2.39 -0.02 2.84 16 42 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.07 1.52 7.92 -2.39 -0.02 1.50 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.06 0.77 5.65 -2.39 -0.01 0.76 16 47 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 50 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 51 H 0.11 2.03 5.89 -2.39 -0.01 2.02 16 52 H 0.07 2.12 6.85 -2.39 -0.02 2.11 16 Total: -1.00 -74.62 402.02 5.36 -69.26 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: 0.89 Total: 16.16 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: 6.35 Total: 12.75 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.81 Total: -96.49 kcal Atomic # 8 Polarization: -48.13 SS G_CDS: -0.10 Total: -48.23 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -74.62 5.36 -69.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745382461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.835 kcal (2) G-P(sol) polarization free energy of solvation -74.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds